Package Index


[Top]

Packages in the standard library

baseThe R Base Package
compilerThe R Compiler Package
datasetsThe R Datasets Package
grDevicesThe R Graphics Devices and Support for Colours and Fonts
graphicsThe R Graphics Package
gridThe Grid Graphics Package
methodsFormal Methods and Classes
parallelSupport for Parallel Computation in R
splinesRegression Spline Functions and Classes
statsThe R Stats Package
stats4Statistical Functions using S4 Classes
tcltkTcl/Tk Interface
toolsTools for Package Development
utilsThe R Utils Package

Packages in the CRAN library

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A3Accurate, Adaptable, and Accessible Error Metrics for Predictive Models
AATtoolsReliability and Scoring Routines for the Approach-Avoidance Task
ABACUSApps Based Activities for Communicating and Understanding Statistics
ABC.RAPArray Based CpG Region Analysis Pipeline
ABCanalysisComputed ABC Analysis
ABCoptimImplementation of Artificial Bee Colony (ABC) Optimization
ABCp2Approximate Bayesian Computational Model for Estimating P2
ABHgenotypeREasy Visualization of ABH Genotypes
ABMAgent Based Model Simulation Framework
ABPSThe Abnormal Blood Profile Score to Detect Blood Doping
ABSurvTDCSurvival Analysis using Time Dependent Covariate for Animal Breeding
ACAAbrupt Change-Point or Aberration Detection in Point Series
ACDmTools for Autoregressive Conditional Duration Models
ACE.CoCoAnalysis of Correlated High-Dimensional Expression (ACE) Data
ACEPAnalisis Computacional de Eventos de Protesta
ACEsearch'ACE' Search Engine API
ACEsimFitACE Kin Pair Data Simulations and Model Fitting
ACEtEstimating Dynamic Heritability and Twin Model Comparison
ACNEAffymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization
ACSWRA Companion Package for the Book "A Course in Statistics with R"
ACTCDAsymptotic Classification Theory for Cognitive Diagnosis
ACVOptimal Out-of-Sample Forecast Evaluation and Testing under Stationarity
ACWRAcute Chronic Workload Ratio Calculation
ADAPTSAutomated Deconvolution Augmentation of Profiles for Tissue Specific Cells
ADCTAdaptive Design in Clinical Trials
ADDTAnalysis of Accelerated Destructive Degradation Test Data
ADERData Analysis in Ecology
ADGofTestAnderson-Darling GoF test
ADLPAccident and Development Period Adjusted Linear Pools for Actuarial Stochastic Reserving
ADMMAlgorithms using Alternating Direction Method of Multipliers
ADMMsigmaPenalized Precision Matrix Estimation via ADMM
ADMURAncient Demographic Modelling Using Radiocarbon
ADPAdoption Probability, Triers and Users Rate of a New Product
ADPFUse Least Squares Polynomial Regression and Statistical Testing to Improve Savitzky-Golay
ADPclustFast Clustering Using Adaptive Density Peak Detection
ADTSATime Series Analysis
ADVICEAutomatic Direct Variable Selection via Interrupted Coefficient Estimation
AEDForecastingChange Point Analysis in ARIMA Forecasting
AEPStatistical Modelling for Asymmetric Exponential Power Distribution
AERApplied Econometrics with R
AEenrichAdverse Event Enrichment Tests
AFModel-Based Estimation of Confounder-Adjusted Attributable Fractions
AFFECTAccelerated Functional Failure Time Model with Error-Contaminated Survival Times
AFMAtomic Force Microscope Image Analysis
AFRToolkit for Regression Analysis of Kazakhstan Banking Sector Data
AFheritabilityThe Attributable Fraction (AF) Described as a Function of Disease Heritability, Prevalence and Intervention Specific Factors
AGDAnalysis of Growth Data
AGHmatrixRelationship Matrices for Diploid and Autopolyploid Species
AGPRISAGricultural PRoductivity in Space
AHMAdditive Heredity Model: Method for the Mixture-of-Mixtures Experiments
AHMbookFunctions and Data for the Book 'Applied Hierarchical Modeling in Ecology' Vols 1 and 2
AHPGaussianNew Multicriteria Method: AHPGaussian
AHPWRCompute Analytic Hierarchy Process
AHPhybridAHP Hybrid Method
AHPtoolsConsistency in the Analytic Hierarchy Process
AHSurvFlexible Parametric Accelerated Hazards Models
AICcPermanovaModel Selection of PERMANOVA Models Using AICc
AICcmodavgModel Selection and Multimodel Inference Based on (Q)AIC(c)
AIDBox-Cox Power Transformation
AIPWAugmented Inverse Probability Weighting
AIUQAb Initio Uncertainty Quantification
ALDqrQuantile Regression Using Asymmetric Laplace Distribution
ALEPlotAccumulated Local Effects (ALE) Plots and Partial Dependence (PD) Plots
ALSMultivariate Curve Resolution Alternating Least Squares (MCR-ALS)
ALSCPCAccelerated line search algorithm for simultaneous orthogonal transformation of several positive definite symmetric matrices to nearly diagonal form.
ALToptOptimal Experimental Designs for Accelerated Life Testing
ALUESAgricultural Land Use Evaluation System
ALassoSurvICAdaptive Lasso for the Cox Regression with Interval Censored and Possibly Left Truncated Data
AMAPVoxLiDAR Data Voxelisation
AMCPA Model Comparison Perspective
AMCTestmakeRGenerate LaTeX Code for Auto-Multiple-Choice (AMC)
AMIMCompute the Adjusted Market Inefficiency Measure
AMModelsAdaptive Management Model Manager
AMPLEShiny Apps to Support Capacity Building on Harvest Control Rules
AMRAntimicrobial Resistance Data Analysis
ANN2Artificial Neural Networks for Anomaly Detection
ANOFAAnalyses of Frequency Data
ANOMAnalysis of Means
ANOPAAnalyses of Proportions using Anscombe Transform
ANOVAIREVAInteractive Document for Working with Analysis of Variance
ANOVAShinyInteractive Document for Working with Analysis of Variance
ANOVAShiny2Interactive Document for Working with Analysis of Variance
AOV1RInference in the Balanced One-Way ANOVA Model with Random Factor
APCIA New Age-Period-Cohort Model for Describing and Investigating Inter-Cohort Differences and Life Course Dynamics
APCanalysisAnalysis of Unreplicated Orthogonal Experiments using All Possible Comparisons
APCtoolsRoutines for Descriptive and Model-Based APC Analysis
APFrMultiple Testing Approach using Average Power Function (APF) and Bayes FDR Robust Estimation
APISAuto-Adaptive Parentage Inference Software Tolerant to Missing Parents
APPEstimationAdjusted Prediction Model Performance Estimation
APackOfTheClonesVisualization of Clonal Expansion for Single Cell Immune Profiles
APtoolsAverage Positive Predictive Values (AP) for Binary Outcomes and Censored Event Times
AQEvalAir Quality Evaluation
AQLSchemesRetrieving Acceptance Sampling Schemes
AQuadtreeConfidentiality of Spatial Point Data
ARAnother Look at the Acceptance-Rejection Method
ARCensRegFitting Univariate Censored Linear Regression Model with Autoregressive Errors
ARCokrigAutoregressive Cokriging Models for Multifidelity Codes
ARDECOAnnual Regional Database of the European Commission (ARDECO)
ARDLARDL, ECM and Bounds-Test for Cointegration
ARGOSAutomatic Regression for Governing Equations (ARGOS)
ARHTAdaptable Regularized Hotelling's T^2 Test for High-Dimensional Data
ARIMAANNTime Series Forecasting using ARIMA-ANN Hybrid Model
ARIbrainAll-Resolution Inference
ARMALSTMFitting of Hybrid ARMA-LSTM Models
AROCCovariate-Adjusted Receiver Operating Characteristic Curve Inference
ARPALDataRetrieving and Analyzing Air Quality and Weather Data from ARPA Lombardia
ARPobservationTools for Simulating Direct Behavioral Observation Recording Procedures Based on Alternating Renewal Processes
ARTAligned Rank Transform for Nonparametric Factorial Analysis
ARTofRTo Insert Title, Divider, and Block of Comments
ARToolAligned Rank Transform
ARUtoolsManagement and Processing of Autonomous Recording Unit (ARU) Data
ARpLMECCensored Mixed-Effects Models with Different Correlation Structures
ASGS.foyerInterface to the Australian Statistical Geography Standard
ASMapLinkage Map Construction using the MSTmap Algorithm
ASRgenomicsComplementary Genomic Functions
ASSAApplied Singular Spectrum Analysis (ASSA)
ASSISTantAdaptive Subgroup Selection in Group Sequential Trials
ASTAge-Spatial-Temporal Model
ASVStochastic Volatility Models with or without Leverage
ATAforecastingAutomatic Time Series Analysis and Forecasting using the Ata Method
ATNrRun Allometric Trophic Networks Models
ATRAlternative Tree Representation
ATboundsBounding Treatment Effects by Limited Information Pooling
AUCThreshold Independent Performance Measures for Probabilistic Classifiers
AUtestsApproximate Unconditional and Permutation Tests
AVGASA Variable Selection using Genetic Algorithms
AWR'AWS' Java 'SDK' for R
AWR.KinesisAmazon 'Kinesis' Consumer Application for Stream Processing
AZIADAnalyzing Zero-Inflated and Zero-Altered Data
AalenJohansenConditional Aalen-Johansen Estimation
Ac3netInferring Directional Conservative Causal Core Gene Networks
AcademicThemesColour Plots with Palettes from Academic Institutions
AccelStabAccelerated Stability Kinetic Modelling
AcceptRejectAcceptance-Rejection Method for Generating Pseudo-Random Observations
AcceptanceSamplingCreation and Evaluation of Acceptance Sampling Plans
AchillesAchilles Data Source Characterization
AcousticNDLCodeRCoding Sound Files for Use with NDL
AcrossTicA Cost-Minimal Regular Spanning Subgraph with TreeClust
ActCRExtract Circadian Rhythms Metrics from Actigraphy Data
ActFragActivity Fragmentation Metrics Extracted from Minute Level Activity Data
ActiveDriverFinding Cancer Driver Proteins with Enriched Mutations in Post-Translational Modification Sites
ActivePathwaysIntegrative Pathway Enrichment Analysis of Multivariate Omics Data
ActivityIndexActivity Index Calculation using Raw 'Accelerometry' Data
ActuarialMComputation of Actuarial Measures Using Bell G Family
AcuityViewA Package for Displaying Visual Scenes as They May Appear to an Animal with Lower Acuity
AdMitAdaptive Mixture of Student-t Distributions
AdaSamplingAdaptive Sampling for Positive Unlabeled and Label Noise Learning
AdapSampAdaptive Sampling Algorithms
AdaptGaussGaussian Mixture Models (GMM)
AdequacyModelAdequacy of Probabilistic Models and General Purpose Optimization
AdhereRAdherence to Medications
AdhereRVizAdherence to Medications
AdvBinomAppsUpper Clopper-Pearson Confidence Limits for Burn-in Studies under Additional Available Information
AdvDif4Solving 1D Advection Bi-Flux Diffusion Equation
AdvancedBasketballStatsAdvanced Basketball Statistics
AeRobiologyA Computational Tool for Aerobiological Data
AeroSampleREstimate Aerosol Particle Collection Through Sample Lines
AggregateRAggregate Numeric, Date and Categorical Variables
AgreementIntervalAgreement Interval of Two Measurement Methods
AgroRExperimental Statistics and Graphics for Agricultural Sciences
AgroRegRegression Analysis Linear and Nonlinear for Agriculture
AgroTechData Analysis of Pesticide Application Technology
AhoCorasickTrieFast Searching for Multiple Keywords in Multiple Texts
AirMonitorAir Quality Data Analysis
AkeAssociated Kernel Estimations
AlgDesignAlgorithmic Experimental Design
AlgebraicHaploPackageHaplotype Two Snips Out of a Paired Group of Patients
AllMetricsCalculating Multiple Performance Metrics of a Prediction Model
AlleleRetainAllele Retention, Inbreeding, and Demography
AlleleShiftPredict and Visualize Population-Level Changes in Allele Frequencies in Response to Climate Change
AllelicSeriesAllelic Series Test
AllspiceRNA-Seq Profile Classifier
AlphaPartPartition/Decomposition of Breeding Values by Paths of Information
AlphaSimRBreeding Program Simulations
AlteredPQRDetection of Altered Protein Quantitative Relationships
AmeliaA Program for Missing Data
AmesHousingThe Ames Iowa Housing Data
AmigaFFHCommodore Amiga File Format Handler
AmmoniaConcentrationUn-Ionized Ammonia Concentration
AmoudSurvTractable Parametric Odds-Based Regression Models
AmpGramPrediction of Antimicrobial Peptides
AmpliconDuoStatistical Analysis of Amplicon Data of the Same Sample to Identify Artefacts
AmyloGramPrediction of Amyloid Proteins
AnaCoDaAnalysis of Codon Data under Stationarity using a Bayesian Framework
AnacondaTargeted Differential and Global Enrichment Analysis of Taxonomic Rank by Shared Asvs
AnalysisLinExploratory Data Analysis
AnanseSeuratConstruct ANANSE GRN-Analysis Seurat
AncestryMapperAssigning Ancestry Based on Population References
AnchorRegressionPerform AnchorRegression
AndromedaAsynchronous Disk-Based Representation of Massive Data
AnglerCreelSurveySimulationSimulate a Bus Route Creel Survey of Anglers
AnimalHabitatNetworkNetworks Characterising the Physical Configurations of Animal Habitats
AnnoProbeAnnotate the Gene Symbols for Probes in Expression Array
AnnotationBustRExtract Subsequences from GenBank Annotations
AnnuityRIRAnnuity Random Interest Rates
AntAngioCOOLAnti-Angiogenic Peptide Prediction
AntMANAnthology of Mixture Analysis Tools
AnthropMMDAn R Package for the Mean Measure of Divergence (MMD)
AnthropometryStatistical Methods for Anthropometric Data
AntibodyTitersAntibody Titer Analysis of Vaccinated Patients
AnxietySleepSleep Quality and Anxiety in Confinement
AoptbdtvcA-Optimal Block Designs for Comparing Test Treatments with Controls
AovBayClassic, Nonparametric and Bayesian One-Way Analysis of Variance Panel
ApacheLogProcessorProcess the Apache Web Server Log Files
ApoderoidesPrioritize and Delete Erroneous Taxa in a Large Phylogenetic Tree
Apollonius2D Apollonius Graphs
AppliedPredictiveModelingFunctions and Data Sets for 'Applied Predictive Modeling'
AquaBEHEREstimation of Rainy Season Calendar and Soil Water Balance for Agriculture
AquaEnvIntegrated Development Toolbox for Aquatic Chemical Model Generation
AquaticLifeHistoryLife History Analysis Tools
ArArReduxRigorous Data Reduction and Error Propagation of Ar40 / Ar39 Data
ArCoArtificial Counterfactual Package
ArDecTime Series Autoregressive-Based Decomposition
ArchaeoPhases.datasetData Sets for 'ArchaeoPhases' Vignettes
AriGaMyANNSVRHybrid ARIMA-GARCH and Two Specially Designed ML-Based Models
ArothronGeometric Morphometric Methods and Virtual Anthropology Tools
AsioHeaders'Asio' C++ Header Files
AssetAllocationBacktesting Simple Asset Allocation Strategies
AssetCorrEstimating Asset Correlations from Default Data
AssetPricingOptimal Pricing of Assets with Fixed Expiry Date
AssocAFCAllele Frequency Comparison
AssocBinMeasuring Association with Recursive Binning
AssocTestsGenetic Association Studies
AsthmaNHANESAsthma Data Sets from NHANES
AsyKKernel Density Estimation
AsymmetricSORDsAsymmetric Second Order Rotatable Designs (AsymmetricSORDs)
AsynchLongRegression Analysis of Sparse Asynchronous Longitudinal Data
AteMeVsAverage Treatment Effects with Measurement Error and Variable Selection for Confounders
AtlasMakerMake Multiple 'leaflet' Maps in 'Shiny'
AtmChileDownload Air Quality and Meteorological Information of Chile
AurieLSHGaussianCreates a Neighbourhood Using Locality Sensitive Hashing for Gaussian Projections
AustralianPoliticiansProvides Datasets About Australian Politicians
AutoAdsAdvertisement Metrics Calculation
AutoDeskRAn Interface to the 'AutoDesk' 'API' Platform
AutoPipeAutomated Transcriptome Classifier Pipeline: Comprehensive Transcriptome Analysis
AutoPlotsCreating Echarts Visualizations as Easy as Possible
AutoScoreAn Interpretable Machine Learning-Based Automatic Clinical Score Generator
AutoStepwiseGLMBuilds Stepwise GLMs via Train and Test Approach
AutoTransQFA Novel Automatic Shifted Log Transformation
AutoWeatherIndicesCalculating Weather Indices
AutoplotproteinDevelopment of Visualization Tools for Protein Sequence
AutoregressionMDEMinimum Distance Estimation in Autoregressive Model
AutoseedRetrieve Disease-Related Genes from Public Sources
AvInertiaCalculate the Inertial Properties of a Flying Bird
AzureAppInsightsInclude Azure Application Insights in Shiny Apps
AzureAuthAuthentication Services for Azure Active Directory
AzureCognitiveInterface to Azure Cognitive Services
AzureContainersInterface to 'Container Instances', 'Docker Registry' and 'Kubernetes' in 'Azure'
AzureCosmosRInterface to the 'Azure Cosmos DB' 'NoSQL' Database Service
AzureGraphSimple Interface to 'Microsoft Graph'
AzureKeyVaultKey and Secret Management in 'Azure'
AzureKustoInterface to 'Kusto'/'Azure Data Explorer'
AzureQstorInterface to 'Azure Queue Storage'
AzureRMRInterface to 'Azure Resource Manager'
AzureStorStorage Management in 'Azure'
AzureTableStorInterface to the Table Storage Service in 'Azure'
AzureVMVirtual Machines in 'Azure'
AzureVMmetadataInterface to Azure Virtual Machine Instance Metadata
AzureVisionInterface to Azure Computer Vision Services
aIcTesting for Compositional Pathologies in Datasets
aLFQEstimating Absolute Protein Quantities from Label-Free LC-MS/MS Proteomics Data
aMNLFAAutomated Moderated Nonlinear Factor Analysis Using 'M-plus'
aPCoACovariate Adjusted PCoA Plot
aPEARAdvanced Pathway Enrichment Analysis Representation
aRpsDCAArps Decline Curve Analysis in R
aRtsyGenerative Art with 'ggplot2'
aRxivInterface to the arXiv API
aSPUAdaptive Sum of Powered Score Test
aTSAAlternative Time Series Analysis
aVirtualTwinsAdaptation of Virtual Twins Method from Jared Foster
abasequenceCoding 'ABA' Patterns for Sequence Data
abbreviateReadable String Abbreviation
abcTools for Approximate Bayesian Computation (ABC)
abc.dataData Only: Tools for Approximate Bayesian Computation (ABC)
abclassAngle-Based Large-Margin Classifiers
abcrfApproximate Bayesian Computation via Random Forests
abcrldaAsymptotically Bias-Corrected Regularized Linear Discriminant Analysis
abctoolsTools for ABC Analyses
abdThe Analysis of Biological Data
abdivAlpha and Beta Diversity Measures
abeAugmented Backward Elimination
aberranceDetect Aberrant Behavior in Test Data
abessFast Best Subset Selection
abglassoAdaptive Bayesian Graphical Lasso
abindCombine Multidimensional Arrays
abjDataDatabases Used Routinely by the Brazilian Jurimetrics Association
abjutilsUseful Tools for Jurimetrical Analysis Used by the Brazilian Jurimetrics Association
ablassoArellano-Bond LASSO Estimator for Dynamic Linear Panel Models
abmRAgent-Based Models in R
abnormalityMeasure a Subject's Abnormality with Respect to a Reference Population
abodOutlierAngle-Based Outlier Detection
abseil'C++' Header Files from 'Abseil'
absorberVariable Selection in Nonparametric Models using B-Splines
abstrR Interface to the A/B Street Transport System Simulation Software
abstractrAn R-Shiny Application for Creating Visual Abstracts
abtestBayesian A/B Testing
abundantHigh-Dimensional Principal Fitted Components and Abundant Regression
academictwitteRAccess the Twitter Academic Research Product Track V2 API Endpoint
accExploring Accelerometer Data
accSDAAccelerated Sparse Discriminant Analysis
accaA Canonical Correlation Analysis with Inferential Guaranties
accelerometryFunctions for Processing Accelerometer Data
accelmissingMissing Value Imputation for Accelerometer Data
acceptThe Acute COPD Exacerbation Prediction Tool (ACCEPT)
accessibilityTransport Accessibility Measures
accessrCommand Line Tools to Produce Accessible Documents using 'R Markdown'
accessrmdImproving the Accessibility of 'rmarkdown' Documents
accrualBayesian Accrual Prediction
accrualPlotAccrual Plots and Predictions for Clinical Trials
accucorNatural Abundance Correction of Mass Spectrometer Data
accumulateSplit-Apply-Combine with Dynamic Groups
acdcRAgro-Climatic Data by County
acdcqueryQuery the Attentional Control Data Collection
ace2fastqACE File to FASTQ Converter
aceEditorThe 'Ace' Editor as a HTML Widget
acebayesOptimal Bayesian Experimental Design using the ACE Algorithm
acepackACE and AVAS for Selecting Multiple Regression Transformations
acfMPeriodRobust Estimation of the ACF from the M-Periodogram
acidAnalysing Conditional Income Distributions
acled.apiAutomated Retrieval of ACLED Conflict Event Data
acnrAnnotated Copy-Number Regions
acopulaModelling Dependence with Multivariate Archimax (or any User-Defined Continuous) Copulas
acpAutoregressive Conditional Poisson
acroA Tool for Automating the Statistical Disclosure Control of Research Outputs
acronameEngine for Acronyms and Initialisms
acsDownload, Manipulate, and Present American Community Survey and Decennial Data from the US Census
acssAlgorithmic Complexity for Short Strings
acss.dataData Only: Algorithmic Complexity of Short Strings (Computed via Coding Theorem Method)
actAligned Corpus Toolkit
actLiferCreating Actuarial Life Tables
actelAcoustic Telemetry Data Analysis
actilifecountsGenerate Activity Counts from Raw Accelerometer Data
activAnalyzerA 'Shiny' App to Analyze Accelerometer-Measured Daily Physical Behavior Data
activPALAdvanced Processing and Chart Generation from activPAL Events Files
activatrUtilities for Parsing and Plotting Activities
activityAnimal Activity Statistics
actogrammrRead in Activity Data and Plot Actograms
actuaREHandling Hierarchically Structured Risk Factors using Random Effects Models
actuarActuarial Functions and Heavy Tailed Distributions
actuaryrDevelop Actuarial Models
actxpsCreate Actuarial Experience Studies: Prepare Data, Summarize Results, and Create Reports
acumos'Acumos' R Interface
adaThe R Package Ada for Stochastic Boosting
adaHuberAdaptive Huber Estimation and Regression
adaRA Fast 'WHATWG' Compliant URL Parser
adabagApplies Multiclass AdaBoost.M1, SAMME and Bagging
adaceEstimator of the Adherer Average Causal Effect
adagioDiscrete and Global Optimization Routines
adamethodsArchetypoid Algorithms and Anomaly Detection
adanaAdaptive Nature-Inspired Algorithms for Hybrid Genetic Optimization
adapt4pvAdaptive Approaches for Signal Detection in Pharmacovigilance
adaptDiagBayesian Adaptive Designs for Diagnostic Trials
adaptIVPTAdaptive Bioequivalence Design for In-Vitro Permeation Tests
adaptMCMCImplementation of a Generic Adaptive Monte Carlo Markov Chain Sampler
adaptMTAdaptive P-Value Thresholding for Multiple Hypothesis Testing with Side Information
adaptTestAdaptive Two-Stage Tests
adaptalintCheck Code Style Painlessly
adaptiveGPCAAdaptive Generalized PCA
adaptivetauTau-Leaping Stochastic Simulation
adaptrAdaptive Trial Simulator
adaptsmoFMRIAdaptive Smoothing of FMRI Data
adbcdrivermanager'Arrow' Database Connectivity ('ADBC') Driver Manager
adbcpostgresql'Arrow' Database Connectivity ('ADBC') 'PostgreSQL' Driver
adbcsqlite'Arrow' Database Connectivity ('ADBC') 'SQLite' Driver
adbi'DBI' Compliant Database Access Using 'ADBC'
adcCalculate Antecedent Discharge Conditions
add2ggplotAdd to 'ggplot2'
addScalesAdds Labeled Center Line and Scale Lines/Regions to Trellis Plots
addhazBinomial and Multinomial Additive Hazard Models
addhazardFit Additive Hazards Models for Survival Analysis
addinsJoaoMeloAddins Made of Joao Melo
addinsOutline'RStudio' Addins for Show Outline of a R Markdown/'LaTeX' Project
addinslistDiscover and Install Useful RStudio Addins
additiveBindings for Additive TidyModels
additiveDEAAdditive Data Envelopment Analysis Models
additivityTestsAdditivity Tests in the Two Way Anova with Single Sub-Class Numbers
addregAdditive Regression for Discrete Data
ade4Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences
ade4TkGUI'ade4' Tcl/Tk Graphical User Interface
adeaAlternate DEA Package
adegenetExploratory Analysis of Genetic and Genomic Data
adegraphicsAn S4 Lattice-Based Package for the Representation of Multivariate Data
adehabitatHRHome Range Estimation
adehabitatHSAnalysis of Habitat Selection by Animals
adehabitatLTAnalysis of Animal Movements
adehabitatMATools to Deal with Raster Maps
adephyloExploratory Analyses for the Phylogenetic Comparative Method
adeproA 'shiny' Application for the (Audio-)Visualization of Adverse Event Profiles
adeptAdaptive Empirical Pattern Transformation
adeptdataAccelerometry Data Sets
adespatialMultivariate Multiscale Spatial Analysis
adestrEstimation in Optimal Adaptive Two-Stage Designs
adfExplorerImport from and Export to Amiga Disk Files
adformRGet Adform Ads Data via the 'Windsor.ai' API
adheRenceRXAssess Medication Adherence from Pharmaceutical Claims Data
adimproAdaptive Smoothing of Digital Images
adivAnalysis of Diversity
adjROCComputing Sensitivity at a Fix Value of Specificity and Vice Versa as Well as Bootstrap Metrics for ROC Curves
adjSURVCIParameter and Adjusted Probability Estimation for Right-Censored Data
adjclustAdjacency-Constrained Clustering of a Block-Diagonal Similarity Matrix
adjustedCurvesConfounder-Adjusted Survival Curves and Cumulative Incidence Functions
adjustedcranlogsRemove Automated and Repeated Downloads from 'RStudio' 'CRAN' Download Logs
adklakedataAdirondack Long-Term Lake Data
adliftAn Adaptive Lifting Scheme Algorithm
admiralADaM in R Asset Library
admiral.testTest Data for the 'admiral' Package
admiraldevUtility Functions and Development Tools for the Admiral Package Family
admiraloncoOncology Extension Package for ADaM in 'R' Asset Library
admiralophthaADaM in R Asset Library - Ophthalmology
admiralvaccineVaccine Extension Package for ADaM in 'R' Asset Library
admiscAdrian Dusa's Miscellaneous
admixPackage Admix for Admixture (aka Contamination) Models
admixrAn Interface for Running 'ADMIXTOOLS' Analyses
admmDensestSubmatrixAlternating Direction Method of Multipliers to Solve Dense Dubmatrix Problem
admtoolsEstimate and Manipulate Age-Depth Models
adnutsNo-U-Turn MCMC Sampling for 'ADMB' Models
adobeanalyticsrR Client for 'Adobe Analytics' API 2.0
adproclusAdditive Profile Clustering Algorithms
adpssDesign and Analysis of Locally or Globally Efficient Adaptive Designs
adsSpatial Point Patterns Analysis
adsDataHubRGoogle Ads Data Hub API Client
adventrInteractive R Tutorials to Accompany Field (2016), "An Adventure in Statistics"
adwAngular Distance Weighting Interpolation
adwaveWavelet Analysis of Genomic Data from Admixed Populations
adwordsRAccess the 'Google Adwords' API
aeddoAutomated and Early Detection of Disease Outbreaks
aedseoAutomated and Early Detection of Seasonal Epidemic Onset
afcGeneralized Discrimination Score
afcoloursGovernment Analysis Function Recommended Accessible Colour Palette
afdxDiagnosis Performance Using Attributable Fraction
afexAnalysis of Factorial Experiments
affinityRaster Georeferencing, Grid Affine Transforms, Cell Abstraction
affinitymatrixEstimation of Affinity Matrix
affluenceIndexAffluence (Richness) Indices
afmToolkitFunctions for Atomic Force Microscope Force-Distance Curves Analysis
afptTools for Modelling of Animal Flight Performance
africamonitorAfrica Macroeconomic Monitor Database API
aftR2R-Squared Measure under Accelerated Failure Time (AFT) Models
aftgeeAccelerated Failure Time Model with Generalized Estimating Equations
afthdAccelerated Failure Time for High Dimensional Data with MCMC
afttestModel Diagnostics for Accelerated Failure Time Models
ag5ToolsToolbox for Downloading and Extracting Copernicus AgERA5 Data
agReeVarious Methods for Measuring Agreement
agcountsCalculate 'ActiGraph' Counts from Accelerometer Data
agegAge Grouping Functions
agena.aiR Wrapper for 'agena.ai' API
ageutilsCollection of Functions for Working with Age Intervals
agfhAgnostic Fay-Herriot Model for Small Area Statistics
aggTreesAggregation Trees
agghooAggregated Hold-Out Cross Validation
aggregationp-Value Aggregation Methods
aggutilsUtilities for Aggregating Probabilistic Forecasts
aghqAdaptive Gauss Hermite Quadrature for Bayesian Inference
aglmAccurate Generalized Linear Model
agopAggregation Operators and Preordered Sets
agriTutorialTutorial Analysis of Some Agricultural Experiments
agricolaeStatistical Procedures for Agricultural Research
agricolaeplotrVisualization of Design of Experiments from the 'agricolae' Package
agridatAgricultural Datasets
agrifeatureAgriculture Image Feature
agriutilitiesUtilities for Data Analysis in Agriculture
agriwaterEvapotranspiration and Energy Fluxes Spatial Analysis
agrmtCalculate Concentration and Dispersion in Ordered Rating Scales
agrostabStability Analysis for Agricultural Research
agsCrosswalk Municipality and District Statistics in Germany
agtboostAdaptive and Automatic Gradient Boosting Computations
agua'tidymodels' Integration with 'h2o'
agvgdAn R Implementation of the 'Align-GVGD' Method
ahMLEMethods for the Additive Hazard Model
ahazRegularization for Semiparametric Additive Hazards Regression
ahnrAn Implementation of the Artificial Hydrocarbon Networks
ahpsurveyAnalytic Hierarchy Process for Survey Data
ahptopsis2nHybrid Method for Multiple Criteria Decision-Making (MCDM)
ahwCalculates Continuous Time Likelihood Ratio Weights Assuming Multiplicative Intensity Models and Additive Hazard Models
aiRlyR Wrapper for 'Airly' API
aiRthermoAtmospheric Thermodynamics and Visualization
aidarTools for Reading AIDA Files
aidesAdditive Information & Details of Evidence Synthesis
aifeducationArtificial Intelligence for Education
aihumanExperimental Evaluation of Algorithm-Assisted Human Decision-Making
aimPlotCreate Pie Like Plot for Completeness
aimsir17Irish Weather Observing Stations Hourly Records for 2017
aionArchaeological Time Series
airAI Assistant to Write and Understand R Code
airGRSuite of GR Hydrological Models for Precipitation-Runoff Modelling
airGRdatasetsHydro-Meteorological Catchments Datasets for the 'airGR' Packages
airGRdatassimEnsemble-Based Data Assimilation with GR Hydrological Models
airGRiwrm'airGR' Integrated Water Resource Management
airGRteachingTeaching Hydrological Modelling with the GR Rainfall-Runoff Models ('Shiny' Interface Included)
aire.zmvmDownload Mexico City Pollution, Wind, and Temperature Data
airnowRetrieve 'AirNow' Air Quality Observations and Forecasts
airportrConvenience Tools for Working with Airport Data
airportsData on Airports
airqualityESAir Quality Measurements in Spain from 2011 to 2018
airrAIRR Data Representation Reference Library
airtEvaluation of Algorithm Collections Using Item Response Theory
aisophAdditive Isotonic Proportional Hazards Model
ajvAnother JSON Schema Validator
akcAutomatic Knowledge Classification
akiFlaggerFlags Acute Kidney Injury (AKI)
akimaInterpolation of Irregularly and Regularly Spaced Data
akmbiclustAlternating K-Means Biclustering
alabamaConstrained Nonlinear Optimization
alakazamImmunoglobulin Clonal Lineage and Diversity Analysis
alarmdataDownload, Merge, and Process Redistricting Data
albatrossPARAFAC Analysis of Fluorescence Excitation-Emission Matrices
albopictusAge-Structured Population Dynamics Model
aldThe Asymmetric Laplace Distribution
aldvmmAdjusted Limited Dependent Variable Mixture Models
aleInterpretable Machine Learning and Statistical Inference with Accumulated Local Effects (ALE)
alfrConnectivity to 'Alfresco' Content Management Repositories
alfredDownloading Time Series from ALFRED Database for Various Vintages
algaeClassifyTools to Standardize Phytoplankton Taxonomic Data and Perform Functional Group Classifications
algoImplement an Address Search Auto Completion Menu on 'Shiny' Text Inputs Using the 'Algolia Places' 'Javascript' Library
algorithmiaAllows you to Easily Interact with the Algorithmia Platform
aliases2entrezConverts Human gene symbols to entrez IDs
alienEstimate Invasive and Alien Species (IAS) Introduction Rates
alignA Modified DTW Algorithm for Stratigraphic Time Series Alignment
alkahestPre-Processing XY Data from Experimental Methods
allMTAcute Lymphoblastic Leukemia Maintenance Therapy Analysis
allcontributorsAcknowledge all Contributors to a Project
alleHapAllele Imputation and Haplotype Reconstruction from Pedigree Databases
allelematchIdentifying Unique Multilocus Genotypes where Genotyping Error and Missing Data may be Present
allestimatesEffect Estimates from All Models
allofusInterface for 'All of Us' Researcher Workbench
allomrRemoving Allometric Effects of Body Size in Morphological Analysis
alluvialAlluvial Diagrams
almanacTools for Working with Recurrence Rules
aloneDatasets from the Survival TV Series Alone
alookrModel Classifier for Binary Classification
aloomAll Leave-One-Out Models
alpacaFit GLM's with High-Dimensional k-Way Fixed Effects
alpha.correction.bhBenjamini-Hochberg Alpha Correction
alphaNSet Alpha Based on Sample Size Using Bayes Factors
alphaOutlierObtain Alpha-Outlier Regions for Well-Known Probability Distributions
alphabetrAlgorithms for High-Throughput Sequencing of Antigen-Specific T Cells
alphaciConfidence Intervals for Coefficient Alpha and Standardized Alpha
alphahullGeneralization of the Convex Hull of a Sample of Points in the Plane
alphashape3dImplementation of the 3D Alpha-Shape for the Reconstruction of 3D Sets from a Point Cloud
alphastableInference for Stable Distribution
alphavantagerLightweight Interface to the Alpha Vantage API
alqrfeAdaptive Lasso Quantile Regression with Fixed Effects
alr4Data to Accompany Applied Linear Regression 4th Edition
altR2Alternative Estimators to Adjusted R-Squared
altadataAPI Wrapper for Altadata.io
altairInterface to 'Altair'
altdocPackage Documentation Websites with 'Quarto', 'Docsify', 'Docute', or 'MkDocs'
altfuelrProvides an Interface to the NREL Alternate Fuels Locator
altmetaAlternative Meta-Analysis Methods
amanidaMeta-Analysis for Non-Integral Data
amanpgAlternating Manifold Proximal Gradient Method for Sparse PCA
amapAnother Multidimensional Analysis Package
amapGeocodeAn Interface to the 'AutoNavi Maps' API Geocoding Services
amaproThin Wrapper for Mapping Library 'AMap'
amazonadsRGet Amazon Ads Data via the 'Windsor.ai' API
amazons3RGet Amazon S3 Data via the 'Windsor.ai' API
amazonspRGet Amazon Sp Data via the 'Windsor.ai' API
amberr'Amber' Electronic Data Capture Client
ambientA Generator of Multidimensional Noise
ambitSimulation and Estimation of Ambit Processes
amelieAnomaly Detection with Normal Probability Functions
amenAdditive and Multiplicative Effects Models for Networks and Relational Data
amerifluxrInterface to 'AmeriFlux' Data Services
amerikaAmerican Politics-Inspired Color Palette Generator
amiChecks for Various Computing Environments
ammiBayesBayesian Ammi Model for Continuous Data
ammistabilityAdditive Main Effects and Multiplicative Interaction Model Stability Parameters
ampStatistical Test for the Multivariate Point Null Hypotheses
ampdAn Algorithm for Automatic Peak Detection in Noisy Periodic and Quasi-Periodic Signals
ampirPredict Antimicrobial Peptides
amregtestRuns Allelematch Regression Tests
amtAnimal Movement Tools
anMCCompute High Dimensional Orthant Probabilities
anabelAnalysis of Binding Events + l
anacorSimple and Canonical Correspondence Analysis
analogseaInterface to 'DigitalOcean'
analogueAnalogue and Weighted Averaging Methods for Palaeoecology
analyzerData Analysis and Automated R Notebook Generation
andConstruct Natural-Language Lists with Internationalization
andrewsVarious Andrews Curves
andurinhaMake Spectroscopic Data Processing Easier
anesrakeANES Raking Implementation
angstromsTools for 'ROMS' the Regional Ocean Modeling System
aniDomInferring Dominance Hierarchies and Estimating Uncertainty
aniSNAStatistical Network Analysis of Animal Social Networks
anim.plotsSimple Animated Plots for R
animalEKFExtended Kalman Filters for Animal Movement
animateA Web-Based Graphics Device for Animated Visualisations
animationA Gallery of Animations in Statistics and Utilities to Create Animations
animbookVisualizing Changes in Performance Measures and Demographic Affiliations using Animation
animint2Animated Interactive Grammar of Graphics
animlA Collection of ML Tools for Conservation Research
anipathsAnimation of Multiple Trajectories with Uncertainty
aniviewAnimate Shiny and R Markdown Content when it Comes into View
anndata'anndata' for R
annmatrixAnnotated Matrix: Matrices with Persistent Row and Column Annotations
annotaterAnnotate Package Load Calls
annotatorImage Annotation and Polygon Outlining using Free Drawing
anocvaA Non-Parametric Statistical Test to Compare Clustering Structures
anomalizeTidy Anomaly Detection
anomalyDetecting Anomalies in Data
anovirAnalysis of Virulence
anscombiserCreate Datasets with Identical Summary Statistics
antaresEditObjectEdit an 'Antares' Simulation
antaresProcessing'Antares' Results Processing
antaresReadImport, Manipulate and Explore the Results of an 'Antares' Simulation
antaresVizAntares Visualizations
anthroComputation of the WHO Child Growth Standards
anthroplusComputation of the WHO 2007 References for School-Age Children and Adolescents (5 to 19 Years)
anticlustSubset Partitioning via Anticlustering
antitrustTools for Antitrust Practitioners
antiwordExtract Text from Microsoft Word Documents
anyLibInstall and Load Any Package from CRAN, Bioconductor or Github
anybadgerCreate Custom Pipeline Badges
anyflightsQuery 'nycflights13'-Like Air Travel Data for Given Years and Airports
anytimeAnything to 'POSIXct' or 'Date' Converter
aoAlternating Optimization
aodAnalysis of Overdispersed Data
aods3Analysis of Overdispersed Data using S3 Methods
aoosAnother Object Orientation System
aopdataData from the 'Access to Opportunities Project (AOP)'
aoristicGenerates Aoristic Probability Distributions
aorsfAccelerated Oblique Random Forests
aosAnimate on Scroll Library for 'shiny'
apaFormat Outputs of Statistical Tests According to APA Guidelines
apaTablesCreate American Psychological Association (APA) Style Tables
apaTextCreate R Markdown Text for Results in the Style of the American Psychological Association (APA)
apache.sedonaR Interface for Apache Sedona
apcAge-Period-Cohort Analysis
apcfAdapted Pair Correlation Function
apclusterAffinity Propagation Clustering
apdesignAn Implementation of the Additive Polynomial Design Matrix
apeAnalyses of Phylogenetics and Evolution
apercuQuick Look at your Data
apexPhylogenetic Methods for Multiple Gene Data
apexcharterCreate Interactive Chart with the JavaScript 'ApexCharts' Library
aphidAnalysis with Profile Hidden Markov Models
aphyloStatistical Inference and Prediction of Annotations in Phylogenetic Trees
api2lmFunctions and Data Sets for the Book "A Progressive Introduction to Linear Models"
apisensrInterface to 'episensr' for Sensitivity Analysis of Epidemiological Results
aplore3Datasets from Hosmer, Lemeshow and Sturdivant, "Applied Logistic Regression" (3rd Ed., 2013)
aplotDecorate a 'ggplot' with Associated Information
aplotExtraCreating Composite Plots using 'aplot'
aplpackAnother Plot Package: 'Bagplots', 'Iconplots', 'Summaryplots', Slider Functions and Others
apmxAutomated Population Pharmacokinetic Dataset Assembly
apngConvert Png Files into Animated Png
apolloTools for Choice Model Estimation and Application
appRioriCode and Obtain Customized Planned Comparisons with 'appRiori'
appeearsInterface to 'AppEEARS' NASA Web Services
appleadsRGet Apple Search Ads Data via the 'Windsor.ai' API
appler'Apple App Store' and 'iTunes' Data Extraction
applicableA Compilation of Applicability Domain Methods
appnnAmyloid Propensity Prediction Neural Network
apportionApportion Seats
approxOTApproximate and Exact Optimal Transport Methods
approximatorBayesian Prediction of Complex Computer Codes
approxmatchApproximately Optimal Fine Balance Matching with Multiple Groups
appsflyeRGet Data from 'Appsflyer' via the 'Windsor.ai' API
appsheetAn Interface to the 'AppSheet' API
aprean3Datasets from Draper and Smith "Applied Regression Analysis" (3rd Ed., 1998)
aprofAmdahl's Profiler, Directed Optimization Made Easy
apsimxInspect, Read, Edit and Run 'APSIM' "Next Generation" and 'APSIM' Classic
aptAsymmetric Price Transmission
apyramidVisualize Population Pyramids Aggregated by Age
aqpAlgorithms for Quantitative Pedology
aquodomAccess to Aquo domaintables from R (Dutch)
ar.matrixSimulate Auto Regressive Data from Precision Matricies
arabic2kansujiConvert Arabic Numerals to Kansuji
arabicStemRArabic Stemmer for Text Analysis
araknoARAchnid KNowledge Online
arcAssociation Rule Classification
arcgeocoderGeocoding with the 'ArcGIS' REST API Service
arcgisArcGIS Location Services Meta-Package
arcgislayersAn Interface to ArcGIS Data Services
arcgisutilsArcGIS Utility Functions
archdataExample Datasets from Archaeological Research
archeoVizVisualisation, Exploration, and Web Communication of Archaeological Spatial Data
archeofragRefitting and Spatial Analysis in Archaeology
archetypalFinds the Archetypal Analysis of a Data Frame
archetyperAn Archetype for Data Mining and Data Science Projects
archetypesArchetypal Analysis
archiDARTPlant Root System Architecture Analysis Using DART and RSML Files
archiveMulti-Format Archive and Compression Support
archiveRetrieverRetrieve Archived Web Pages from the 'Internet Archive'
archivistTools for Storing, Restoring and Searching for R Objects
archivist.githubTools for Archiving, Managing and Sharing R Objects via GitHub
arcpbfProcess ArcGIS Protocol Buffer FeatureCollections
arcpullrPull Data from an 'ArcGIS REST' API
arcpyInterface to 'ArcGIS' 'Python' Modules
arctoolsProcessing and Physical Activity Summaries of Minute Level Activity Data
ardl.nardlLinear and Nonlinear Autoregressive Distributed Lag Models: General-to-Specific Approach
ardsCreates Analysis Results Datasets
areaCalculate Area of Triangles and Polygons
areabiplotArea Biplot
arealAreal Weighted Interpolation
arealDBHarmonise and Integrate Heterogeneous Areal Data
areaplotPlot Stacked Areas and Confidence Bands as Filled Polygons
arena2rPlots, Summary Statistics and Tools for Arena Simulation Users
arenarArena for the Exploration and Comparison of any ML Models
arfAdversarial Random Forests
arfimaFractional ARIMA (and Other Long Memory) Time Series Modeling
argoAccurate Estimation of Influenza Epidemics using Google Search Data
argoFloatsAnalysis of Oceanographic Argo Floats
argonDashArgon Shiny Dashboard Template
argonRR Interface to Argon HTML Design
argosfilterArgos Locations Filter
argparseCommand Line Optional and Positional Argument Parser
argparserCommand-Line Argument Parser
argusRandom Variate Generator for the Argus Distribution
ariAutomated R Instructor
aricodeEfficient Computations of Standard Clustering Comparison Measures
arima2Likelihood Based Inference for ARIMA Modeling
arkdbArchive and Unarchive Databases Using Flat Files
arkheTools for Cleaning Rectangular Data
armData Analysis Using Regression and Multilevel/Hierarchical Models
armsppAdaptive Rejection Metropolis Sampling (ARMS) via 'Rcpp'
arnie"Arnie" box office records 1982-2014
aroma.affymetrixAnalysis of Large Affymetrix Microarray Data Sets
aroma.apdA Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated]
aroma.cnCopy-Number Analysis of Large Microarray Data Sets
aroma.coreCore Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework
arprAdvanced R Pipes
arrApplyApply a Function to a Margin of an Array
arrangementsFast Generators and Iterators for Permutations, Combinations, Integer Partitions and Compositions
arrayhelpersConvenience Functions for Arrays
arrowIntegration to 'Apache' 'Arrow'
arsAdaptive Rejection Sampling
arseArea of Resilience to Stress Event
arsenalAn Arsenal of 'R' Functions for Large-Scale Statistical Summaries
artfimaARTFIMA Model Estimation
arthistoryArt History Textbook Data
artpackCreates Generative Art Data
arulesMining Association Rules and Frequent Itemsets
arulesCBAClassification Based on Association Rules
arulesNBMinerMining NB-Frequent Itemsets and NB-Precise Rules
arulesSequencesMining Frequent Sequences
arulesVizVisualizing Association Rules and Frequent Itemsets
asaurData Sets for "Applied Survival Analysis Using R""
asbioA Collection of Statistical Tools for Biologists
ascentTrainingAscent Training Datasets
asciiExport R Objects to Several Markup Languages
asciiSetupReaderReads Fixed-Width ASCII Data Files (.txt or .dat) that Have Accompanying Setup Files (.sps or .sas)
asciicastCreate 'Ascii' Screen Casts from R Scripts
asciichartrLightweight ASCII Line Graphs
asciirulerRender an ASCII Ruler
ascotraceRSimulate the Spread of Ascochyta Blight in Chickpea
asdSimulations for Adaptive Seamless Designs
asdreaderReading ASD Binary Files in R
ashDavid Scott's ASH Routines
ashapesamplerGenerating Alpha Shapes
ashrMethods for Adaptive Shrinkage, using Empirical Bayes
ashtApplied Statistical Hypothesis Tests
askgptAsking GPT About R Stuff
askpassPassword Entry Utilities for R, Git, and SSH
aslibInterface to the Algorithm Selection Benchmark Library
asmOptimal Convex M-Estimation for Linear Regression via Antitonic Score Matching
asmbPLSPredicting and Classifying Patient Phenotypes with Multi-Omics Data
asnipeAnimal Social Network Inference and Permutations for Ecologists
aspaceFunctions for Estimating Centrographic Statistics
aspectA General Framework for Multivariate Analysis with Optimal Scaling
aspiAnalysis of Symmetry of Parasitic Infections
asplineSpline Regression with Adaptive Knot Selection
asremlPlusAugments 'ASReml-R' in Fitting Mixed Models and Packages Generally in Exploring Prediction Differences
assertValidate Function Arguments
assertableVerbose Assertions for Tabular Data (Data.frames and Data.tables)
assertionsSimple Assertions for Beautiful and Customisable Error Messages
assertrAssertive Programming for R Analysis Pipelines
assertthatEasy Pre and Post Assertions
assessorAssessment Tools for Regression Models with Discrete and Semicontinuous Outcomes
assignPOPPopulation Assignment using Genetic, Non-Genetic or Integrated Data in a Machine Learning Framework
assignRInfer Geographic Origin from Isotopic Data
assistA Suite of R Functions Implementing Spline Smoothing Techniques
assocIndImplements New and Existing Association Indices for Constructing Animal Social Networks
assortnetCalculate the Assortativity Coefficient of Weighted and Binary Networks
ast2astTranslates an R Function to a C++ Function
asteRiskComputation of Satellite Position
asterAster Models
aster2Aster Models
astroFnsAstronomy: Time and Position Functions, Misc. Utilities
astrochronA Computational Tool for Astrochronology
astrodatRAstronomical Data
astsaApplied Statistical Time Series Analysis
asusAdaptive SURE Thresholding Using Side Information
asylumData on Asylum and Resettlement for the UK
asymLDAsymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic Data
asymmetryMultidimensional Scaling of Asymmetric Proximities
asymmetry.measuresAsymmetry Measures for Probability Density Functions
asympTestA Simple R Package for Classical Parametric Statistical Tests and Confidence Intervals in Large Samples
asymptorEstimate Asymptomatic Cases via Capture/Recapture Methods
asyncCoroutines: Generators / Yield, Async / Await, and Streams
atRiskAt-Risk
ataAutomated Test Assembly
atableCreate Tables for Reporting Clinical Trials
atakrigArea-to-Area Kriging
atimeAsymptotic Timing
atlasStanford 'ATLAS' Search Engine API
atmoptAnalysis-of-Marginal-Tail-Means
atom4RTools to Handle and Publish Metadata as 'Atom' XML Format
atpolRATPOL Grid Implementation
atrrrWrapper for the 'AT' Protocol Behind 'Bluesky'
attachmentDeal with Dependencies
attemptTools for Defensive Programming
attentionSelf-Attention Algorithm
attenuationCorrecting for Attenuation Due to Measurement Error
attribAttributable Burden of Disease
auRocVarious Methods to Estimate the AUC
auctestrStatistical Testing for AUC Data
auctionrEstimate First-Price Auction Model
audioAudio Interface for R
audiometryStandard Conform Pure Tone Audiometry (PTA) Plots
auditBounds for Accounting Populations
auditorModel Audit - Verification, Validation, and Error Analysis
audrexAutomatic Dynamic Regression using Extreme Gradient Boosting
audubonJapanese Text Processing Tools
augSIMEXAnalysis of Data with Mixed Measurement Error and Misclassification in Covariates
augmentedRCBDAnalysis of Augmented Randomised Complete Block Designs
aukeBird Data Extraction and Processing in R
aumArea Under Minimum of False Positives and Negatives
ausplotsRTERN AusPlots Australian Ecosystem Monitoring Data
auth0Authentication in Shiny with Auth0
auto.pcaAutomatic Variable Reduction Using Principal Component Analysis
autoBaggingLearning to Rank Bagging Workflows with Metalearning
autoCovariateSelectionAutomated Covariate Selection Using HDPS Algorithm
autoEnsembleAutomated Stacked Ensemble Classifier for Severe Class Imbalance
autoFCAutomatic Construction of Forced-Choice Tests
autoFRKAutomatic Fixed Rank Kriging
autoGOAuto-GO: Reproducible, Robust and High Quality Ontology Enrichment Visualizations
autoMFAAlgorithms for Automatically Fitting MFA Models
autoMrPImproving MrP with Ensemble Learning
autoRaschSemi-Automated Rasch Analysis
autoRegAutomatic Linear and Logistic Regression and Survival Analysis
autoScorecardFully Automatic Generation of Scorecards
autoTSAutomatic Model Selection and Prediction for Univariate Time Series
autocartAutocorrelation Regression Trees
autocogsAutomatic Cognostic Summaries
autoharpSemi-Automatic Grading of R and Rmd Scripts
autohrfAutomated Generation of Data-Informed GLM Models in Task-Based fMRI Data Analysis
autoimageMultiple Heat Maps for Projected Coordinates
autokerasR Interface to 'AutoKeras'
automagicAutomagically Document and Install Packages Necessary to Run R Code
automapAutomatic Interpolation Package
automlDeep Learning with Metaheuristic
autonewsmdAuto-Generate Changelog using Conventional Commits
autoplotlyAutomatic Generation of Interactive Visualizations for Statistical Results
autoshinyAutomatic Transformation of an 'R' Function into a 'shiny' App
autostsmAutomatic Structural Time Series Models
autothresholdrAn R Port of the 'ImageJ' Plugin 'Auto Threshold'
avWorking with Audio and Video in R
availableCheck if the Title of a Package is Available, Appropriate and Interesting
avarAllan Variance
averiskCalculation of Average Population Attributable Fractions and Confidence Intervals
avesperuAccess to the List of Birds Species of Peru
avidaRA Computational Biologist’s Toolkit To Get Data From 'avidaDB'
avocadoWeekly Hass Avocado Sales Summary
avotrexA Global Dataset of Anthropogenic Extinct Birds and their Traits: Phylogeny Builder
aweSOMInteractive Self-Organizing Maps
aweekConvert Dates to Arbitrary Week Definitions
awinRGet Data from 'Awin' via the 'Windsor.ai' API
awsAdaptive Weights Smoothing
aws.alexaClient for the Amazon Alexa Web Information Services API
aws.comprehendClient for 'AWS Comprehend'
aws.ec2metadataGet EC2 Instance Metadata
aws.ecxCommunicating with AWS EC2 and ECS using AWS REST APIs
aws.iamAWS IAM Client Package
aws.kms'AWS Key Management Service' Client Package
aws.lambdaAWS Lambda Client Package
aws.pollyClient for AWS Polly
aws.s3'AWS S3' Client Package
aws.signatureAmazon Web Services Request Signatures
aws.transcribeClient for 'AWS Transcribe'
aws.translateClient for 'AWS Translate'
aws.wrfsmnData Processing of SMN Hi-Res Weather Forecast from 'AWS'
awsMethodsClass and Methods Definitions for Packages 'aws', 'adimpro', 'fmri', 'dwi'
axisandalliesAxis and Allies Spring
azlogrLogging in 'R' and Post to 'Azure Log Analytics' Workspace
azuremlsdkInterface to the 'Azure Machine Learning' 'SDK'
BACCOBayesian Analysis of Computer Code Output (BACCO)
BACCTBayesian Augmented Control for Clinical Trials
BACpriorChoice of Omega in the BAC Algorithm
BAGofTA Binary Regression Adaptive Goodness-of-Fit Test (BAGofT)
BALLIExpression RNA-Seq Data Analysis Based on Linear Mixed Model
BAMBIBivariate Angular Mixture Models
BAMMtoolsAnalysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees
BANOVAHierarchical Bayesian ANOVA Models
BARBayesian Adaptive Randomization
BARTBayesian Additive Regression Trees
BASBayesian Variable Selection and Model Averaging using Bayesian Adaptive Sampling
BASSBayesian Adaptive Spline Surfaces
BASiNETClassification of RNA Sequences using Complex Network Theory
BASiNETEntropyClassification of RNA Sequences using Complex Network and Information Theory
BATBiodiversity Assessment Tools
BAYSTAROn Bayesian Analysis of Threshold Autoregressive Models
BAwiRAnalysis of Basketball Data
BBSolving and Optimizing Large-Scale Nonlinear Systems
BBESTBayesian Estimation of Incoherent Neutron Scattering Backgrounds
BBIBenthic Biotic Indices Calculation from Composition Data
BBSSLBayesian Bootstrap Spike-and-Slab LASSO
BBmiscMiscellaneous Helper Functions for B. Bischl
BCA1SGBlock Coordinate Ascent with One-Step Generalized Rosen Algorithm
BCBCSFBias-Corrected Bayesian Classification with Selected Features
BCC1997Calculation of Option Prices Based on a Universal Solution
BCClongBayesian Consensus Clustering for Multiple Longitudinal Features
BCDAGBayesian Structure and Causal Learning of Gaussian Directed Graphs
BCDatingBusiness Cycle Dating and Plotting Tools
BCEABayesian Cost Effectiveness Analysis
BCEEThe Bayesian Causal Effect Estimation Algorithm
BCHMClinical Trial Calculation Based on BCHM Design
BCRABreast Cancer Risk Assessment
BCSubA Bayesian Semiparametric Factor Analysis Model for Subtype Identification (Clustering)
BCTBayesian Context Trees for Discrete Time Series
BCgeeBias-Corrected Estimates for Generalized Linear Models for Dependent Data
BClustLonGA Dirichlet Process Mixture Model for Clustering Longitudinal Gene Expression Data
BDAlgoBloom Detecting Algorithm
BDEsizeEfficient Determination of Sample Size in Balanced Design of Experiments
BDP2Bayesian Adaptive Designs for Phase II Trials with Binary Endpoint
BDWregBayesian Inference for Discrete Weibull Regression
BDgraphBayesian Structure Learning in Graphical Models using Birth-Death MCMC
BEBioequivalence Study Data Analysis
BEACHBiometric Exploratory Analysis Creation House
BEDBiological Entity Dictionary (BED)
BEDASSLEQuantifies Effects of Geo/Eco Distance on Genetic Differentiation
BEDMatrixExtract Genotypes from a PLINK .bed File
BEKKsMultivariate Conditional Volatility Modelling and Forecasting
BENDBayesian Estimation of Nonlinear Data (BEND)
BENMMIBenthic Multi-Metric Index
BESTreeBranch-Exclusive Splits Trees
BETBinary Expansion Testing
BETSBrazilian Economic Time Series
BElikelihoodLikelihood Method for Evaluating Bioequivalence
BFFBayes Factor Functions
BFIBayesian Federated Inference
BFSGet Data from the Swiss Federal Statistical Office
BFpackFlexible Bayes Factor Testing of Scientific Expectations
BGDataA Suite of Packages for Analysis of Big Genomic Data
BGFDBell-G and Complementary Bell-G Family of Distributions
BGGEBayesian Genomic Linear Models Applied to GE Genome Selection
BGGMBayesian Gaussian Graphical Models
BGLRBayesian Generalized Linear Regression
BGPhazardMarkov Beta and Gamma Processes for Modeling Hazard Rates
BGVARBayesian Global Vector Autoregressions
BGmiscAn R Package for Extended Behavior Genetics Analysis
BHBoost C++ Header Files
BHAIEstimate the Burden of Healthcare-Associated Infections
BHH2Useful Functions for Box, Hunter and Hunter II
BHMSMAfMRIBayesian Hierarchical Multi-Subject Multiscale Analysis of Functional MRI (fMRI) Data
BHSBVARStructural Bayesian Vector Autoregression Models
BIBlinding Assessment Indexes for Randomized, Controlled, Clinical Trials
BICORNIntegrative Inference of De Novo Cis-Regulatory Modules
BIENTools for Accessing the Botanical Information and Ecology Network Database
BIFIEsurveyTools for Survey Statistics in Educational Assessment
BIGDAWGCase-Control Analysis of Multi-Allelic Loci
BIGLBiochemically Intuitive Generalized Loewe Model
BINCOREstimate the Correlation Between Two Irregular Time Series
BINtoolsBayesian BIN (Bias, Information, Noise) Model of Forecasting
BIOMASSEstimating Aboveground Biomass and Its Uncertainty in Tropical Forests
BIOdryMultilevel Modeling of Dendroclimatical Fluctuations
BISdataDownload Data from the Bank for International Settlements (BIS)
BKTRBayesian Kernelized Tensor Regression
BLCOPBlack-Litterman and Copula Opinion Pooling Frameworks
BLModelBlack-Litterman Posterior Distribution
BLOQImpute and Analyze Data with BLOQ Observations
BLPestimatoRPerforms a BLP Demand Estimation
BLRBayesian Linear Regression
BLRPMStochastic Rainfall Generator Bartlett-Lewis Rectangular Pulse Model
BLRShinyInteractive Document for Working with Binary Logistic Regression Analysis
BLRShiny2Interactive Document for Working with Binary Logistic Regression Analysis
BLSMBayesian Latent Space Model
BMABayesian Model Averaging
BMAmevtMultivariate Extremes: Bayesian Estimation of the Spectral Measure
BMRBr'BMRB' File Downloader
BMRMMAn Implementation of the Bayesian Markov (Renewal) Mixed Models
BMSBayesian Model Averaging Library
BMTThe BMT Distribution
BMTARBayesian Approach for MTAR Models with Missing Data
BMconcorCONCOR for Structural- And Regular-Equivalence Blockmodeling
BMiscMiscellaneous Functions for Panel Data, Quantiles, and Printing Results
BNPTSclustA Bayesian Nonparametric Algorithm for Time Series Clustering
BNPdensityFerguson-Klass Type Algorithm for Posterior Normalized Random Measures
BNPmixBayesian Nonparametric Mixture Models
BNSLBayesian Network Structure Learning
BNSPBayesian Non- And Semi-Parametric Model Fitting
BNrichPathway Enrichment Analysis Based on Bayesian Network
BOINBayesian Optimal INterval (BOIN) Design for Single-Agent and Drug- Combination Phase I Clinical Trials
BOJInterface to Bank of Japan Statistics
BOSOBilevel Optimization Selector Operator
BOSSregBest Orthogonalized Subset Selection (BOSS)
BPMBayesian Purity Model to Estimate Tumor Purity
BRACEBias Reduction Through Analysis of Competing Events (BRACE)
BRACoD.RBRACoD: Bayesian Regression Analysis of Compositional Data
BRBVSVariable Ranking in Copula Survival Models Affected by General Censoring Scheme
BRDTBinomial Reliability Demonstration Tests
BREADREstimates Degrees of Relatedness (Up to the Second Degree) for Extreme Low-Coverage Data
BRETIGEABrain Cell Type Specific Gene Expression Analysis
BRINDAComputation of BRINDA Adjusted Micronutrient Biomarkers for Inflammation
BRISCFast Inference for Large Spatial Datasets using BRISC
BRLBeta Record Linkage
BRVMRetrieve Historical Data of Companies Listed on the 'BRVM' Stock Exchange
BRugsInterface to the 'OpenBUGS' MCMC Software
BSDABasic Statistics and Data Analysis
BSGWBayesian Survival Model with Lasso Shrinkage Using Generalized Weibull Regression
BSLBayesian Synthetic Likelihood
BSPADATABayesian Proposal to Fit Spatial Econometric Models
BSPBSSBayesian Spatial Blind Source Separation
BSSBrownian Semistationary Processes
BSSasympAsymptotic Covariance Matrices of Some BSS Mixing and Unmixing Matrix Estimates
BSSoverSpaceBlind Source Separation for Multivariate Spatial Data using Eigen Analysis
BSSprepWhitening Data as Preparation for Blind Source Separation
BSWFitting a Log-Binomial Model using the Bekhit-Schöpe-Wagenpfeil (BSW) Algorithm
BSagriSafety Assessment in Agricultural Field Trials
BT(Adaptive) Boosting Trees Algorithm
BTLLassoModelling Heterogeneity in Paired Comparison Data
BTMBiterm Topic Models for Short Text
BTSPASBayesian Time-Stratified Population Analysis
BTSRBounded Time Series Regression
BTYDImplementing BTYD Models with the Log Sum Exp Patch
BTYDplusProbabilistic Models for Assessing and Predicting your Customer Base
BTdecayLassoBradley-Terry Model with Exponential Time Decayed Log-Likelihood and Adaptive Lasso
BTtestEstimate the Number of Factors in Large Nonstationary Datasets
BUCSSBias and Uncertainty Corrected Sample Size
BVARHierarchical Bayesian Vector Autoregression
BVARverseTidy Bayesian Vector Autoregression
BVSNLPBayesian Variable Selection in High Dimensional Settings using Nonlocal Priors
BWGSBreedWheat Genomic Selection Pipeline
BWStestBaumgartner Weiss Schindler Test of Equal Distributions
BaMFunctions and Datasets for "Bayesian Methods: A Social and Behavioral Sciences Approach"
BaSkeProBayesian Model to Archaeological Faunal Skeletal Profiles
BalanceCheckBalance Check for Multiple Covariates in Matched Observational Studies
BalancedSamplingBalanced and Spatially Balanced Sampling
BallStatistical Inference and Sure Independence Screening via Ball Statistics
BallMapperThe Ball Mapper Algorithm
BarBorGradientFunction Minimum Approximator
BarcodingRSpecies Identification using DNA Barcodes
BarnardBarnard's Unconditional Test
BaseSetWorking with Sets the Tidy Way
BaseTempSeedEstimation of Seed Germination Base Temperature in Thermal Modelling
BasketballAnalyzeRAnalysis and Visualization of Basketball Data
BatchExperimentsStatistical Experiments on Batch Computing Clusters
BatchGetSymbolsDownloads and Organizes Financial Data for Multiple Tickers
BatchJobsBatch Computing with R
BayenetBayesian Quantile Elastic Net for Genetic Study
BayesARIMAXBayesian Estimation of ARIMAX Model
BayesBEKKBayesian Estimation of Bivariate Volatility Model
BayesBPBayesian Estimation using Bernstein Polynomial Fits Rate Matrix
BayesBinMixBayesian Estimation of Mixtures of Multivariate Bernoulli Distributions
BayesCACEBayesian Model for CACE Analysis
BayesCRBayesian Analysis of Censored Regression Models Under Scale Mixture of Skew Normal Distributions
BayesCTDesignTwo Arm Bayesian Clinical Trial Design with and Without Historical Control Data
BayesCVIBayesian Cluster Validity Index
BayesComboBayesian Evidence Combination
BayesCommBayesian Community Ecology Analysis
BayesDAFunctions and Datasets for the book "Bayesian Data Analysis"
BayesDIPBayesian Decreasingly Informative Priors for Early Termination Phase II Trials
BayesDLMfMRIStatistical Analysis for Task-Based Fmri Data
BayesDesignBayesian Single-Arm Design with Survival Endpoints
BayesDissolutionBayesian Models for Dissolution Testing
BayesESSDetermining Effective Sample Size
BayesFBHborrowBayesian Dynamic Borrowing with Flexible Baseline Hazard Function
BayesFMBayesian Inference for Factor Modeling
BayesFactorComputation of Bayes Factors for Common Designs
BayesFluxRImplementation of Bayesian Neural Networks
BayesGOFBayesian Modeling via Frequentist Goodness-of-Fit
BayesGPfitFast Bayesian Gaussian Process Regression Fitting
BayesGWQSBayesian Grouped Weighted Quantile Sum Regression
BayesGmedBayesian Causal Mediation Analysis using 'Stan'
BayesGrowthEstimate Fish Growth Using MCMC Analysis
BayesLCABayesian Latent Class Analysis
BayesLNBayesian Inference for Log-Normal Data
BayesLogitPolyaGamma Sampling
BayesMFSurvBayesian Misclassified-Failure Survival Model
BayesMallowsBayesian Preference Learning with the Mallows Rank Model
BayesMassBalBayesian Data Reconciliation of Separation Processes
BayesMixSurvBayesian Mixture Survival Models using Additive Mixture-of-Weibull Hazards, with Lasso Shrinkage and Stratification
BayesMortalityPlusBayesian Mortality Modelling
BayesMultMetaBayesian Multivariate Meta-Analysis
BayesMultiModeBayesian Mode Inference
BayesNSGPBayesian Analysis of Non-Stationary Gaussian Process Models
BayesNetBPBayesian Network Belief Propagation
BayesOrdDesignBayesian Group Sequential Design for Ordinal Data
BayesPPDBayesian Power Prior Design
BayesPPDSurvBayesian Power Prior Design for Survival Data
BayesPieceHazSelectVariable Selection in a Hierarchical Bayesian Model for a Hazard Function
BayesPostEstGenerate Postestimation Quantities for Bayesian MCMC Estimation
BayesProjectFast Projection Direction for Multivariate Changepoint Detection
BayesRGMMBayesian Robust Generalized Mixed Models for Longitudinal Data
BayesRSBayes Factors for Hierarchical Linear Models with Continuous Predictors
BayesRepBayesian Analysis of Replication Studies
BayesRepDesignBayesian Design of Replication Studies
BayesReversePLLHFits the Bayesian Piecewise Linear Log-Hazard Model
BayesS5Bayesian Variable Selection Using Simplified Shotgun Stochastic Search with Screening (S5)
BayesSURBayesian Seemingly Unrelated Regression
BayesSamplingBayes Linear Estimators for Finite Population
BayesSenMCDifferent Models of Posterior Distributions of Adjusted Odds Ratio
BayesSurvivalBayesian Survival Analysis for Right Censored Data
BayesSurviveBayesian Survival Models for High-Dimensional Data
BayesToolsTools for Bayesian Analyses
BayesTreeBayesian Additive Regression Trees
BayesTreePriorBayesian Tree Prior Simulation
BayesTwinBayesian Analysis of Item-Level Twin Data
BayesVarSelBayes Factors, Model Choice and Variable Selection in Linear Models
BayesXR Utilities Accompanying the Software Package BayesX
BayesXsrcDistribution of the 'BayesX' C++ Sources
BayesfMRISpatial Bayesian Methods for Task Functional MRI Studies
BayesianFactorZooBayesian Solutions for the Factor Zoo: We Just Ran Two Quadrillion Models
BayesianGLassoBayesian Graphical Lasso
BayesianLateralityPredict Brain Asymmetry Based on Handedness and Dichotic Listening
BayesianMCPModSimulate, Evaluate, and Analyze Dose Finding Trials with Bayesian MCPMod
BayesianMediationABayesian Mediation Analysis
BayesianNetworkBayesian Network Modeling and Analysis
BayesianPlatformDesignTimeTrendSimulate and Analyse Bayesian Platform Trial with Time Trend
BayesianPowerSample Size and Power for Comparing Inequality Constrained Hypotheses
BayesianReasoningPlot Positive and Negative Predictive Values for Medical Tests
BayesianToolsGeneral-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics
BayesiangammaregBayesian Gamma Regression: Joint Mean and Shape Modeling
BayesiantregBayesian t Regression for Modeling Mean and Scale Parameters
BayesrelBayesian Reliability Estimation
BcDiagDiagnostics Plots for Bicluster Data
BchronRadiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate Estimation, and Non-Parametric Phase Modelling
BeQutBayesian Estimation for Quantile Regression Mixed Models
BeSSBest Subset Selection in Linear, Logistic and CoxPH Models
BeastJarJAR Dependency for MCMC Using 'BEAST'
BeeBDCOccurrence Data Cleaning
BeeGUTSGeneral Unified Threshold Model of Survival for Bees using Bayesian Inference
BenchmarkingBenchmark and Frontier Analysis Using DEA and SFA
BenfordTestsStatistical Tests for Evaluating Conformity to Benford's Law
BergmBayesian Exponential Random Graph Models
BernadetteBayesian Inference and Model Selection for Stochastic Epidemics
BesselComputations and Approximations for Bessel Functions
BestieBayesian Estimation of Intervention Effects
BetaBitMini Games from Adventures of Beta and Bit
BetaPASSCalculate Power and Sample Size with Beta Regression
BetterRegBetter Statistics for OLS and Binomial Logistic Regression
BeviMedBayesian Evaluation of Variant Involvement in Mendelian Disease
BeyondBenfordCompare the Goodness of Fit of Benford's and Blondeau Da Silva's Digit Distributions to a Given Dataset
BhatGeneral Likelihood Exploration
BiBitRR Wrapper for Java Implementation of BiBit
BiCausalityBinary Causality Inference Framework
BiDAGBayesian Inference for Directed Acyclic Graphs
BiDimRegressionCalculates the Bidimensional Regression Between Two 2D Configurations
BiObjClassClassification of Algorithms
BiSEpToolkit to Identify Candidate Synthetic Lethality
BiTrinABinarization and Trinarization of One-Dimensional Data
BiasCorrectorA GUI to Correct Measurement Bias in DNA Methylation Analyses
BiasedUrnBiased Urn Model Distributions
BibPlotsPlot Functions for Use in Bibliometrics
BifactorIndicesCalculatorBifactor Indices Calculator
BigQuicBig Quadratic Inverse Covariance Estimation
BigVARDimension Reduction Methods for Multivariate Time Series
BimodalIndexThe Bimodality Index
BinGSDCalculation for Single Arm Group Sequential Test with Binary Endpoint
BinMatProcesses Binary Data Obtained from Fragment Analysis (Such as AFLPs, ISSRs, and RFLPs)
BinNonNorData Generation with Binary and Continuous Non-Normal Components
BinNorSimultaneous Generation of Multivariate Binary and Normal Variates
BinOrdNonNorConcurrent Generation of Binary, Ordinal and Continuous Data
BinSegBstrapPiecewise Smooth Regression by Bootstrapped Binary Segmentation
BinarizeBinarization of One-Dimensional Data
BinaryDosageCreates, Merges, and Reads Binary Dosage Files
BinaryEMVSVariable Selection for Binary Data Using the EM Algorithm
BinarybalancedCutThreshold Cut Point of Probability for a Binary Classifier Model
BioCircosInteractive Circular Visualization of Genomic Data using 'htmlwidgets' and 'BioCircos.js'
BioCroModular Crop Growth Simulations
BioInsightFilter and Plot RNA Biotypes
BioMarkFind Biomarkers in Two-Class Discrimination Problems
BioPETBiomarker Prognostic Enrichment Tool
BioPETsurvBiomarker Prognostic Enrichment Tool for Time-to-Event Trial
BioProbabilityProbability in Biostatistics
BioRssayAnalyze Bioassays and Probit Graphs
BioStatRInitiation à La Statistique Avec R
BioVennCreate Area-Proportional Venn Diagrams from Biological Lists
BiocManagerAccess the Bioconductor Project Package Repository
BiodemBiodemography Functions
BiodiversityRPackage for Community Ecology and Suitability Analysis
BioiBiological Image Analysis
BiostatisticsStatistics Tutorials for Biologists
BiostatsUHNplusNested Data Summary and Adverse Events
BipartiteModularityMaximizationPartition Bipartite Network into Non-Overlapping Biclusters by Optimizing Bipartite Modularity
BisRNAAnalysis of RNA Cytosine-5 Methylation
BisqueRNADecomposition of Bulk Expression with Single-Cell Sequencing
BivGeoBasu-Dhar Bivariate Geometric Distribution
BivRecBivariate Alternating Recurrent Event Data Analysis
BivRegBLSTolerance Interval and EIV Regression - Method Comparison Studies
BivUnifBinGeneration of Bivariate Uniform Data and Its Relation to Bivariate Binary Data
Bivariate.ParetoBivariate Pareto Models
BlakerCIBlaker's Binomial and Poisson Confidence Limits
BlandAltmanLehPlots (Slightly Extended) Bland-Altman Plots
BlendstatJoint Analysis of Experiments with Mixtures and Random Effects
BlockCovEstimation of Large Block Covariance Matrices
BlockMissingDataIntegrating Multi-Source Block-Wise Missing Data in Model Selection
BlockmodelingGUIGUI for the Generalised Blockmodeling of Valued Networks
BlythStillCasellaCIBlyth-Still-Casella Exact Binomial Confidence Intervals
BoSSAA Bunch of Structure and Sequence Analysis
BoardGamesBoard Games and Tools for Building Board Games
BodiBoosting Diversity in Regression Ensembles
BolstadFunctions for Elementary Bayesian Inference
Bolstad2Bolstad Functions
BoltzMMBoltzmann Machines with MM Algorithms
BonEVAn Improved Multiple Testing Procedure for Controlling False Discovery Rates
BondValuationFixed Coupon Bond Valuation Allowing for Odd Coupon Periods and Various Day Count Conventions
BoneProfileRTools to Study Bone Compactness
BoolFilterOptimal Estimation of Partially Observed Boolean Dynamical Systems
BoolNetConstruction, Simulation and Analysis of Boolean Networks
BoomBayesian Object Oriented Modeling
BoomSpikeSlabMCMC for Spike and Slab Regression
BoostMLRBoosting for Multivariate Longitudinal Responses
BootMRMRBootstrap-MRMR Technique for Informative Gene Selection
BootPRBootstrap Prediction Intervals and Bias-Corrected Forecasting
BootWPTOSTest Stationarity using Bootstrap Wavelet Packet Tests
BootstrapQTLBootstrap cis-QTL Method that Corrects for the Winner's Curse
BoptbdBayesian Optimal Block Designs
BorutaWrapper Algorithm for All Relevant Feature Selection
BosonSamplingClassical Boson Sampling
BoundEdgeworthBound on the Error of the First-Order Edgeworth Expansion
BoundaryStatsBoundary Overlap Statistics
BoutrosLab.plotting.generalFunctions to Create Publication-Quality Plots
BradleyTerry2Bradley-Terry Models
BrailleRImproved Access for Blind Users
BrainConInference the Partial Correlations Based on Time Series Data
BranchGLMEfficient Best Subset Selection for GLMs via Branch and Bound Algorithms
BranchingSimulation and Estimation for Branching Processes
BrazilMetDownload and Processing of Automatic Weather Stations (AWS) Data of INMET-Brazil
BreakPointsIdentify Breakpoints in Series of Data
BrobdingnagVery Large Numbers in R
BrokenAdaptiveRidgeBroken Adaptive Ridge Regression with Cyclops
BrownDogBrown Dog R Interface
BrqBayesian Analysis of Quantile Regression Models
BsMDBayes Screening and Model Discrimination
BuddleA Deep Learning for Statistical Classification and Regression Analysis with Random Effects
BuildSysSystem for Building and Debugging C/C++ Dynamic Libraries
BurStFinBurns Statistics Financial
BurStMiscBurns Statistics Miscellaneous
BusinessDurationCalculates Business Duration Between Two Dates
BuyseTestGeneralized Pairwise Comparisons
BvalueB-Value and Empirical Equivalence Bound
BwQuantBandwidth Selectors for Local Linear Quantile Regression
b64Fast and Vectorized Base 64 Engine
bRacatusA Method to Estimate the Accuracy and Biogeographical Status of Georeferenced Biological Data
bReezeFunctions for Wind Resource Assessment
bSiModeling and Computing Biogenic Silica ('bSi') from Inland and Pelagic Sediments
bSimsAgent-Based Bird Point Count Simulator
bWGRBayesian Whole-Genome Regression
baRcodeRLabel Creation for Tracking and Collecting Data from Biological Samples
babelRibosome Profiling Data Analysis
babelgeneGene Orthologs for Model Organisms in a Tidy Data Format
babelmixr2Use 'nlmixr2' to Interact with Open Source and Commercial Software
babelwhaleTalking to 'Docker' and 'Singularity' Containers
babynamesUS Baby Names 1880-2017
babynamesILIsrael Baby Names 1948-2022
bacistoolBayesian Classification and Information Sharing (BaCIS) Tool for the Design of Multi-Group Phase II Clinical Trials
backShiftLearning Causal Cyclic Graphs from Unknown Shift Interventions
backboneExtracts the Backbone from Graphs
backpipeBackward Pipe (Right-to-Left) Operator
backportsReimplementations of Functions Introduced Since R-3.0.0
backtestExploring Portfolio-Based Conjectures About Financial Instruments
bacondecompGoodman-Bacon Decomposition
bacrBayesian Adjustment for Confounding
badgenFast and Simple Badge Generator
badgerBadge for R Package
baffleMake Waffle Plots with Base Graphics
bagged.outliertreesRobust Explainable Outlier Detection Based on OutlierTree
baguetteEfficient Model Functions for Bagging
bagyoPhilippine Tropical Cyclones Data
bahcFilter Covariance and Correlation Matrices with Bootstrapped-Averaged Hierarchical Ansatz
bainBayes Factors for Informative Hypotheses
baizerUseful Functions for Data Processing
bakeoffData from "The Great British Bake Off"
baker"Nested Partially Latent Class Models"
bamaHigh Dimensional Bayesian Mediation Analysis
bambooHRA Wrapper to the 'BambooHR' API
bamditBayesian Meta-Analysis of Diagnostic Test Data
bamlssBayesian Additive Models for Location, Scale, and Shape (and Beyond)
bammSpecies Distribution Models as a Function of Biotic, Abiotic and Movement Factors (BAM)
bampBayesian Age-Period-Cohort Modeling and Prediction
bandicootLight-Weight 'python'-Like Object-Oriented System
banditFunctions for Simple a/B Split Test and Multi-Armed Bandit Analysis
banditpamAlmost Linear-Time k-Medoids Clustering
bandsfdpCompute Upper Prediction Bounds on the FDP in Competition-Based Setups
banffITAutomatize Diagnosis Standardized Assignation Using the Banff Classification
bangBayesian Analysis, No Gibbs
bangladeshProvides Ready to Use Shapefiles for Geographical Map of Bangladesh
bannerCommenterMake Banner Comments with a Consistent Format
banterBioAcoustic eveNT classifiER
banxicoRDownload Data from the Bank of Mexico
bapredBatch Effect Removal and Addon Normalization (in Phenotype Prediction using Gene Data)
barcodeRender Barcode Distribution Plots
bardrComplete Works of William Shakespeare in Tidy Format
barkBayesian Additive Regression Kernels
bartCauseCausal Inference using Bayesian Additive Regression Trees
bartMachineBayesian Additive Regression Trees
bartMachineJARsbartMachine JARs
bartManCreate Visualisations for BART Models
bartcsBayesian Additive Regression Trees for Confounder Selection
basadBayesian Variable Selection with Shrinking and Diffusing Priors
base.rmsConvert Regression Between Base Function and 'rms' Package
base64Base64 Encoder and Decoder
base64encTools for base64 encoding
base64urlFast and URL-Safe Base64 Encoder and Decoder
baseballrAcquiring and Analyzing Baseball Data
basecambUtilities for Streamlined Data Import, Imputation and Modelling
basedosdados'Base Dos Dados' R Client
basefunInfrastructure for Computing with Basis Functions
baselineBaseline Correction of Spectra
basemapsAccessing Spatial Basemaps in R
basemodelsBaseline Models for Classification and Regression
baseqBasic Sequence Processing Tool for Biological Data
basethemeThemes for Base Graphics Plots
basfPlot Simple Features with 'base' Sensibilities
basicMCMCplotsTrace Plots, Density Plots and Chain Comparisons for MCMC Samples
basicdrmFit Hill Dose Response Models
basictablerConstruct Rich Tables for Output to 'HTML'/'Excel'
basifoRRetrieval and Processing of the Spanish National Forest Inventory
basketBasket Trial Analysis
baskexactAnalytical Calculation of Basket Trial Operating Characteristics
basksimSimulation-Based Calculation of Basket Trial Operating Characteristics
batataManaging Packages Removal and Installation
batchBatching Routines in Parallel and Passing Command-Line Arguments to R
batchmeansConsistent Batch Means Estimation of Monte Carlo Standard Errors
batchmixSemi-Supervised Bayesian Mixture Models Incorporating Batch Correction
batchscrBatch Script Helpers
batchtmaBatch Effect Adjustments
batchtoolsTools for Computation on Batch Systems
bateComputes Bias-Adjusted Treatment Effect
batmanConvert Categorical Representations of Logicals to Actual Logicals
batschReal-Time PCR Data Sets by Batsch et al. (2008)
batteryreductionAn R Package for Data Reduction by Battery Reduction
bayMDSBayesian Multidimensional Scaling and Choice of Dimension
bayclumprBayesian Analysis of Clumped Isotope Datasets
baycnBayesian Inference for Causal Networks
bayefdrBayesian Estimation and Optimisation of Expected False Discovery Rate
bayesABFast Bayesian Methods for AB Testing
bayesCTSimulation and Analysis of Adaptive Bayesian Clinical Trials
bayesDPImplementation of the Bayesian Discount Prior Approach for Clinical Trials
bayesDccGarchMethods and Tools for Bayesian Dynamic Conditional Correlation GARCH(1,1) Model
bayesGAMFit Multivariate Response Generalized Additive Models using Hamiltonian Monte Carlo
bayesGARCHBayesian Estimation of the GARCH(1,1) Model with Student-t Innovations
bayesImageSBayesian Methods for Image Segmentation using a Potts Model
bayesLifeBayesian Projection of Life Expectancy
bayesMRMBayesian Multivariate Receptor Modeling
bayesMeanScaleBayesian Post-Estimation on the Mean Scale
bayesMigBayesian Projection of Migration
bayesPOBayesian Inference for Presence-Only Data
bayesPopProbabilistic Population Projection
bayesQRBayesian Quantile Regression
bayesROEBayesian Regions of Evidence
bayesReconProbabilistic Reconciliation via Conditioning
bayesSurvBayesian Survival Regression with Flexible Error and Random Effects Distributions
bayesTFRBayesian Fertility Projection
bayesWatchBayesian Change-Point Detection for Process Monitoring with Fault Detection
bayesZIBBayesian Zero-Inflated Bernoulli Regression Model
bayesammiBayesian Estimation of the Additive Main Effects and Multiplicative Interaction Model
bayesanovaBayesian Inference in the Analysis of Variance via Markov Chain Monte Carlo in Gaussian Mixture Models
bayesassuranceBayesian Assurance Computation
bayesbioMiscellaneous Functions for Bioinformatics and Bayesian Statistics
bayesbootAn Implementation of Rubin's (1981) Bayesian Bootstrap
bayescopularegBayesian Copula Regression
bayescountPower Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC
bayesdfaBayesian Dynamic Factor Analysis (DFA) with 'Stan'
bayesdistregBayesian Distribution Regression
bayesforecastBayesian Time Series Modeling with Stan
bayesianBindings for Bayesian TidyModels
bayesianETASBayesian Estimation of the ETAS Model for Earthquake Occurrences
bayesianVARsMCMC Estimation of Bayesian Vectorautoregressions
bayeslmEfficient Sampling for Gaussian Linear Regression with Arbitrary Priors
bayeslongitudinalAdjust Longitudinal Regression Models Using Bayesian Methodology
bayesmBayesian Inference for Marketing/Micro-Econometrics
bayesmetaBayesian Random-Effects Meta-Analysis and Meta-Regression
bayesmixBayesian Mixture Models with JAGS
bayesmlogitA Multistate Life Table (MSLT) Methodology Based on Bayesian Approach
bayesmoveNon-Parametric Bayesian Analyses of Animal Movement
bayesnecA Bayesian No-Effect- Concentration (NEC) Algorithm
bayesplayThe Bayes Factor Playground
bayesplotPlotting for Bayesian Models
bayespmBayesian Statistical Process Monitoring
bayesregBayesian Regression Models with Global-Local Shrinkage Priors
bayesrulesDatasets and Supplemental Functions from Bayes Rules! Book
bayessBayesian Essentials with R
bayestEffect Size Targeted Bayesian Two-Sample t-Tests via Markov Chain Monte Carlo in Gaussian Mixture Models
bayestestRUnderstand and Describe Bayesian Models and Posterior Distributions
bayesvlVisually Learning the Graphical Structure of Bayesian Networks and Performing MCMC with 'Stan'
bayfoxrGlobal Bayesian Foraminifera Core Top Calibration
baygelBayesian Shrinkage Estimators for Precision Matrices in Gaussian Graphical Models
baymedrComputation of Bayes Factors for Common Biomedical Designs
baystabilityBayesian Stability Analysis of Genotype by Environment Interaction (GEI)
baytrendsLong Term Water Quality Trend Analysis
bazarMiscellaneous Basic Functions
bbdetectionIdentification of Bull and Bear States of the Market
bbkClient for the Bundesbank API
bbknnRPerform Batch Balanced KNN in R
bblBoltzmann Bayes Learner
bbmixBayesian Model for Genotyping using RNA-Seq
bbmleTools for General Maximum Likelihood Estimation
bbotkBlack-Box Optimization Toolkit
bbregBessel and Beta Regressions via Expectation-Maximization Algorithm for Continuous Bounded Data
bbwBlocked Weighted Bootstrap
bc3netGene Regulatory Network Inference with Bc3net
bcROCsurfaceBias-Corrected Methods for Estimating the ROC Surface of Continuous Diagnostic Tests
bcabootBias Corrected Bootstrap Confidence Intervals
bccpBias Correction under Censoring Plan
bcdataSearch and Retrieve Data from the BC Data Catalogue
bcfCausal Inference using Bayesian Causal Forests
bcfrailphSemiparametric Bivariate Correlated Frailty Models Fit
bcfrailphdvBivariate Correlated Frailty Models with Varied Variances
bcgamBayesian Constrained Generalised Linear Models
bcmapsMap Layers and Spatial Utilities for British Columbia
bcmixedMixed Effect Model with the Box-Cox Transformation
bcpaBehavioral Change Point Analysis of Animal Movement
bcputilityWrapper for SQL Server bcp Utility
bcrmBayesian Continual Reassessment Method for Phase I Dose-Escalation Trials
bcrypt'Blowfish' Password Hashing Algorithm
bcvCross-Validation for the SVD (Bi-Cross-Validation)
bdDwCDarwinizer: Darwin Core (DwC) Field Names Standardization
bdaBinned Data Analysis
bdcBiodiversity Data Cleaning
bdeBounded Density Estimation
bdlInterface and Tools for 'BDL' API
bdlpTransparent and Reproducible Artificial Data Generation
bdotsBootstrapped Differences of Time Series
bdparBig Data Preprocessing Architecture
bdpvInference and Design for Predictive Values in Diagnostic Tests
bdrcBayesian Discharge Rating Curves
bdribsBayesian Detection of Potential Risk Using Inference on Blinded Safety Data
bdscaleRemove Weekends and Holidays from ggplot2 Axes
bdsmatrixRoutines for Block Diagonal Symmetric Matrices
bdsvdBlock Structure Detection Using Singular Vectors
bdvisBiodiversity Data Visualizations
bea.RBureau of Economic Analysis API
beadplexrAnalysis of Multiplex Cytometric Bead Assays
beakrA Minimalist Web Framework for R
beanplotVisualization via Beanplots (Like Boxplot/Stripchart/Violin Plot)
beansData on Dried Beans
beanzBayesian Analysis of Heterogeneous Treatment Effect
bearishTraderTrading Strategies for Bearish Outlook
beastBayesian Estimation of Change-Points in the Slope of Multivariate Time-Series
beastierCall 'BEAST2'
beautier'BEAUti' from R
bedrGenomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix'
beeprEasily Play Notification Sounds on any Platform
beeswarmThe Bee Swarm Plot, an Alternative to Stripchart
beezdemandBehavioral Economic Easy Demand
beezdiscountingBehavioral Economic Easy Discounting
befprojMakes a Local Population Projection
behaviorchangeTools for Behavior Change Researchers and Professionals
behavrCanonical Data Structure for Behavioural Data
belexDownload Historical Data from the Belgrade Stock Exchange
belgBoltzmann Entropy of a Landscape Gradient
bellregCount Regression Models Based on the Bell Distribution
benchHigh Precision Timing of R Expressions
benchden28 Benchmark Densities from Berlinet/Devroye (1994)
benchmarkmeCrowd Sourced System Benchmarks
benchmarkmeDataData Set for the 'benchmarkme' Package
benchrHigh Precise Measurement of R Expressions Execution Time
benderBender Client
benfordBenford's Analysis on Large Data Sets
benford.analysisBenford Analysis for Data Validation and Forensic Analytics
bennuBayesian Estimation of Naloxone Kit Number Under-Reporting
bentcableARBent-Cable Regression for Independent Data or Autoregressive Time Series
benthosMarine Benthic Ecosystem Analysis
berryFunctionsFunction Collection Related to Plotting and Hydrology
bestNormalizeNormalizing Transformation Functions
bestSDPBurden Estimate of Common Communicable Diseases in Settlements of Displaced Populations
bestglmBest Subset GLM and Regression Utilities
besthrGenerating Bootstrap Estimation Distributions of HR Data
bestridgeA Comprehensive R Package for Best Subset Selection
betaBayesBayesian Beta Regression
betaDeltaConfidence Intervals for Standardized Regression Coefficients
betaMCMonte Carlo for Regression Effect Sizes
betaNBBootstrap for Regression Effect Sizes
betaSandwichRobust Confidence Intervals for Standardized Regression Coefficients
betacalBeta Calibration
betaclustA Family of Beta Mixture Models for Clustering Beta-Valued DNA Methylation Data
betafunctionsFunctions for Working with Two- And Four-Parameter Beta Probability Distributions and Psychometric Analysis of Classifications
betapartPartitioning Beta Diversity into Turnover and Nestedness Components
betaperTaxonomic Uncertainty on Multivariate Analyses of Ecological Data
betaregBeta Regression
betategarchSimulation, Estimation and Forecasting of Beta-Skew-t-EGARCH Models
bethelBethel's algorithm.
bets.covid19The BETS Model for Early Epidemic Data
bexyVisualize and Parse the Output of 'BeXY'
beyondWhittleBayesian Spectral Inference for Time Series
bezierToolkit for Bezier Curves and Splines
bfastBreaks for Additive Season and Trend
bfpBayesian Fractional Polynomials
bfsMapsPlot Maps from Switzerland by Swiss Federal Statistical Office
bfslBest-Fit Straight Line
bfwBayesian Framework for Computational Modeling
bgevBimodal GEV Distribution with Location Parameter
bgevaBinary Generalized Extreme Value Additive Models
bggAnalyticsBoardGameGeek's Board Game Data Analysis Tools
bggumBayesian Estimation of Generalized Graded Unfolding Model Parameters
bgmfilesExample BGM Files for the Atlantis Ecosystem Model
bgmmGaussian Mixture Modeling Algorithms and the Belief-Based Mixture Modeling
bgmsBayesian Analysis of Networks of Binary and/or Ordinal Variables
bgsmtrBayesian Group Sparse Multi-Task Regression
bgumbelBimodal Gumbel Distribution
bgwBunch-Gay-Welsch Statistical Estimation
bhmBiomarker Threshold Models
bhmbasketBayesian Hierarchical Models for Basket Trials
bhpmBayesian Hierarchical Poisson Models for Multiple Grouped Outcomes with Clustering
biClassifyBinary Classification Using Extensions of Discriminant Analysis
bib2dfParse a BibTeX File to a Data Frame
biblioInteracting with BibTeX Databases
bibliometrixComprehensive Science Mapping Analysis
bibliometrixDataBibliometrix Example Datasets
biblionetworkCreate Different Types of Bibliometric Networks
biblioreferGenerator of Main Scientific References
biblioverlapDocument-Level Matching Between Bibliographic Datasets
bibsBayesian Inference for the Birnbaum-Saunders Distribution
bibtexBibtex Parser
biclustBiCluster Algorithms
biclustermdBiclustering with Missing Data
bidaskEfficient Estimation of Bid-Ask Spreads from Open, High, Low, and Close Prices
bifeBinary Choice Models with Fixed Effects
bifurcatingrBifurcating Autoregressive Models
bigBitsPerform Boolean Operations on Large Numbers
bigDFlexibly Format Dates and Times to a Given Locale
bigDMScalable Bayesian Disease Mapping Models for High-Dimensional Data
bigGPDistributed Gaussian Process Calculations
bigMapBig Data Mapping
bigQFQuadratic Forms in Large Matrices
bigRegGeneralized Linear Models (GLM) for Large Data Sets
bigSurvSGDBig Survival Analysis Using Stochastic Gradient Descent
bigalgebra'BLAS' and 'LAPACK' Routines for Native R Matrices and 'big.matrix' Objects
biganalyticsUtilities for 'big.matrix' Objects from Package 'bigmemory'
bigassertrAssertion and Message Functions
bigchessRead, Write, Manipulate, Explore Chess PGN Files and R API to UCI Chess Engines
bigdatadistDistances for Machine Learning and Statistics in the Context of Big Data
bigergmFit, Simulate, and Diagnose Hierarchical Exponential-Family Models for Big Networks
biglassoExtending Lasso Model Fitting to Big Data
bigleafPhysical and Physiological Ecosystem Properties from Eddy Covariance Data
biglmBounded Memory Linear and Generalized Linear Models
biglmmBounded Memory Linear and Generalized Linear Models
bigmatchMaking Optimal Matching Size-Scalable Using Optimal Calipers
bigmdsMultidimensional Scaling for Big Data
bigmemoryManage Massive Matrices with Shared Memory and Memory-Mapped Files
bigmemory.sriA Shared Resource Interface for Bigmemory Project Packages
bignumArbitrary-Precision Integer and Floating-Point Mathematics
bigparallelrEasy Parallel Tools
bigreadrRead Large Text Files
bigrqueryAn Interface to Google's 'BigQuery' 'API'
bigrquerystorageAn Interface to Google's 'BigQuery Storage' API
bigsimrFast Generation of High-Dimensional Random Vectors
bigsnprAnalysis of Massive SNP Arrays
bigsparserSparse Matrix Format with Data on Disk
bigsplinesSmoothing Splines for Large Samples
bigstatsrStatistical Tools for Filebacked Big Matrices
bigstepStepwise Selection for Large Data Sets
bigtabulateTable, Apply, and Split Functionality for Matrix and 'big.matrix' Objects
bigtcrNonparametric Analysis of Bivariate Gap Time with Competing Risks
bigtimeSparse Estimation of Large Time Series Models
bigutilsrUtility Functions for Large-scale Data
bikeshare14Bay Area Bike Share Trips in 2014
bikm1Co-Clustering Adjusted Rand Index and Bikm1 Procedure for Contingency and Binary Data-Sets
bildA Package for BInary Longitudinal Data
billboardContains Data of Billboard Hot 100 Songs
billboarderCreate Interactive Chart with the JavaScript 'Billboard' Library
bimetsTime Series and Econometric Modeling
binGroupEvaluation and Experimental Design for Binomial Group Testing
binGroup2Identification and Estimation using Group Testing
binMtoMany-to-One Comparisons of Proportions
binancerAPI Client to 'Binance'
binaryGPFit and Predict a Gaussian Process Model with (Time-Series) Binary Response
binaryMMFlexible Marginalized Models for Binary Correlated Outcomes
binb'binb' is not 'Beamer'
bindaMulti-Class Discriminant Analysis using Binary Predictors
bindataGeneration of Artificial Binary Data
bindrParametrized Active Bindings
bindrcppAn 'Rcpp' Interface to Active Bindings
binequalityMethods for Analyzing Binned Income Data
binfordBinford's Hunter-Gatherer Data
binfunestEstimates Parameters of Functions Driving Binomial Random Variables
bingadsRGet Bing Ads Data via the 'Windsor.ai' API
bingatBinary Graph Analysis Tools
binhfHaar-Fisz Functions for Binomial Data
binmanA Binary Download Manager
binomBinomial Confidence Intervals for Several Parameterizations
binomCIConfidence Intervals for a Binomial Proportion
binomialRFBinomial Random Forest Feature Selection
binomialtrendCalculates the Statistical Significance of a Trend in a Set of Measurements
binovisualfieldsDepth-Dependent Binocular Visual Fields Simulation
binpackrFast 1d Bin Packing
binrCut Numeric Values into Evenly Distributed Groups
binsegRcppEfficient Implementation of Binary Segmentation
binseqtestExact Binary Sequential Designs and Analysis
binsmoothGenerate PDFs and CDFs from Binned Data
binsppBayesian Inference for Neyman-Scott Point Processes
binsregBinscatter Estimation and Inference
binstData Preprocessing, Binning for Classification and Regression
bio.inferPredict Environmental Conditions from Biological Observations
bio3dBiological Structure Analysis
bioC.logsBioConductor Package Downloads Stats
bioPNSimulation of deterministic and stochastic biochemical reaction networks using Petri Nets
bioRadBiological Analysis and Visualization of Weather Radar Data
bioSNRBioacoustic Basic Operations with Decibels and the Passive Sonar Equation
bioacousticsAnalyse Audio Recordings and Automatically Extract Animal Vocalizations
biobricksAccess Data Dependencies Installed Through 'Biobricks.ai'
bioclimBioclimatic Analysis and Classification
biocomputeCreate and Manipulate BioCompute Objects
biodosetoolsAn R Shiny Application for Biological Dosimetry
biogasProcess Biogas Data and Predict Biogas Production
biogeomBiological Geometries
biogramN-Gram Analysis of Biological Sequences
biogrowthModelling of Population Growth
bioimagetoolsTools for Microscopy Imaging
bioinactivationMathematical Modelling of (Dynamic) Microbial Inactivation
biomartrGenomic Data Retrieval
biometryassistFunctions to Assist Design and Analysis of Agronomic Experiments
biomod2Ensemble Platform for Species Distribution Modeling
bionetdataBiological and Chemical Data Networks
biopixRExtracting Insights from Biological Images
bioregionComparison of Bioregionalisation Methods
bios2mdsFrom Biological Sequences to Multidimensional Scaling
biosampleRBiodiversity Index Calculation and Bootstrap Confidence Interval Estimation
biosensors.uscDistributional Data Analysis Techniques for Biosensor Data
bioseqA Toolbox for Manipulating Biological Sequences
biosignalEMGTools for Electromyogram Signals (EMG) Analysis
biospearBiomarker Selection in Penalized Regression Models
biostat3Utility Functions, Datasets and Extended Examples for Survival Analysis
bioticCalculation of Freshwater Biotic Indices
biotoolsTools for Biometry and Applied Statistics in Agricultural Science
bipartiteVisualising Bipartite Networks and Calculating Some (Ecological) Indices
bipartiteD3Interactive Bipartite Graphs
bipdBayesian Individual Patient Data Meta-Analysis using 'JAGS'
bipl5Construct Reactive Calibrated Axes Biplots
biplotEZEZ-to-Use Biplots
biplotbootGUIBootstrap on Classical Biplots and Clustering Disjoint Biplot
birankrRanking Nodes in Bipartite and Weighted Networks
birdringMethods to Analyse Ring Re-Encounter Data
birdscanRMigration Traffic Rate Calculation Package for 'Birdscan MR1' Radars
birkMA Birk's Functions
birtrThe R Package for "The Basics of Item Response Theory Using R"
biscaleTools and Palettes for Bivariate Thematic Mapping
bisectrTools to find bad commits with git bisect
bispdepStatistical Tools for Bivariate Spatial Dependence Analysis
bisqueApproximate Bayesian Inference via Sparse Grid Quadrature Evaluation (BISQuE) for Hierarchical Models
bitClasses and Methods for Fast Memory-Efficient Boolean Selections
bit64A S3 Class for Vectors of 64bit Integers
biteBayesian Integrative Models of Trait Evolution
bitmexrR Client for BitMEX
bitopsBitwise Operations
bittermelonMonochrome Bitmap Font Tools
bivariatemapsCreates Bivariate Maps
bivgeomRoy's Bivariate Geometric Distribution
bivpoisBivariate Poisson Distribution
bivrpBivariate Residual Plots with Simulation Polygons
biwaveletConduct Univariate and Bivariate Wavelet Analyses
biwtCompute the Biweight Mean Vector and Covariance & Correlation Matrice
bizdaysBusiness Days Calculations and Utilities
bizicountBivariate Zero-Inflated Count Models Using Copulas
bkmrBayesian Kernel Machine Regression
bkmrhatParallel Chain Tools for Bayesian Kernel Machine Regression
blackboxBlack Box Optimization and Exploration of Parameter Space
blackmarblerBlack Marble Data and Statistics
blaiseRead and Write FWF Files in the 'Blaise' Format
blapsrBayesian Inference with Laplace Approximations and P-Splines
blasterNative R Implementation of an Efficient BLAST-Like Algorithm
blastulaEasily Send HTML Email Messages
blatentBayesian Latent Variable Models
blenderAnalyze biotic homogenization of landscapes
blindrecalcBlinded Sample Size Recalculation
blindreviewEnables Blind Review of Database
blissBayesian Functional Linear Regression with Sparse Step Functions
blmBinomial Linear Regression
blmeBayesian Linear Mixed-Effects Models
blmecoData Files and Functions Accompanying the Book "Bayesian Data Analysis in Ecology using R, BUGS and Stan"
blobA Simple S3 Class for Representing Vectors of Binary Data ('BLOBS')
blockCVSpatial and Environmental Blocking for K-Fold and LOO Cross-Validation
blockForestBlock Forests: Random Forests for Blocks of Clinical and Omics Covariate Data
blockToolsBlock, Assign, and Diagnose Potential Interference in Randomized Experiments
blockclusterCo-Clustering Package for Binary, Categorical, Contingency and Continuous Data-Sets
blocklengthSelect an Optimal Block-Length to Bootstrap Dependent Data (Block Bootstrap)
blockmatrixblockmatrix: Tools to solve algebraic systems with partitioned matrices
blockmodelingGeneralized and Classical Blockmodeling of Valued Networks
blockmodelsLatent and Stochastic Block Model Estimation by a 'V-EM' Algorithm
blockrandRandomization for Block Random Clinical Trials
blocksdesignNested and Crossed Block Designs for Factorial and Unstructured Treatment Sets
blocsEstimate and Visualize Voting Blocs' Partisan Contributions
blogdownCreate Blogs and Websites with R Markdown
blorrTools for Developing Binary Logistic Regression Models
blrmDose Escalation Design in Phase I Oncology Trial Using Bayesian Logistic Regression Modeling
blsBanditData Viewer for Bureau of Labor Statistics Data
blsRMake Requests from the Bureau of Labor Statistics API
blscrapeRAn API Wrapper for the United States Bureau of Labor Statistics
bltmBayesian Latent Threshold Modeling
bluebikeBlue Bike Comprehensive Data
bmabasketBayesian Model Averaging for Basket Trials
bmassBayesian Multivariate Analysis of Summary Statistics
bmemMediation Analysis with Missing Data Using Bootstrap
bmemLavaanMediation Analysis with Missing Data and Non-Normal Data
bmetBayesian Multigroup Equivalence Testing
bmggumBayesian Multidimensional Generalized Graded Unfolding Model
bmixtureBayesian Estimation for Finite Mixture of Distributions
bmlmBayesian Multilevel Mediation
bmpRead Windows Bitmap (BMP) Images
bmscstanBayesian Multilevel Single Case Models using 'Stan'
bmstdrBayesian Modeling of Spatio-Temporal Data with R
bnclassifyLearning Discrete Bayesian Network Classifiers from Data
bndesrAccess Data from the Brazilian Development Bank (BNDES)
bndovbBounding Omitted Variable Bias Using Auxiliary Data
bnlearnBayesian Network Structure Learning, Parameter Learning and Inference
bnmaBayesian Network Meta-Analysis using 'JAGS'
bnmonitorAn Implementation of Sensitivity Analysis in Bayesian Networks
bnnSurvivalBagged k-Nearest Neighbors Survival Prediction
bnpaBayesian Networks & Path Analysis
bnpsdSimulate Genotypes from the BN-PSD Admixture Model
bnstructBayesian Network Structure Learning from Data with Missing Values
bnviewerBayesian Networks Interactive Visualization and Explainable Artificial Intelligence
boaBayesian Output Analysis Program (BOA) for MCMC
bodenmillerProfiling of Peripheral Blood Mononuclear Cells using CyTOF
bodsrCall the Bus Open Data Service ('BODS') API Through R
bodycompPercent Body Fat Values Using Anthropometric Prediction Equations
boggyReal-Time PCR Data Sets by Boggy et al. (2010)
boilerpipeRInterface to the Boilerpipe Java Library
boinetConduct Simulation Study of Bayesian Optimal Interval Design with BOIN-ET Family
boiwsaSeasonal Adjustment of Weekly Data
bolassoModel Consistent Lasso Estimation Through the Bootstrap
boldInterface to Bold Systems API
bolsecBolivian Securities
bondAnalystMethods for Fixed-Income Valuation, Risk and Return
bonnAccess INKAR Database
bonsaiModel Wrappers for Tree-Based Models
boodistSome Distributions from the 'Boost' Library and More
bookdownAuthoring Books and Technical Documents with R Markdown
boostingDEAA Boosting Approach to Data Envelopment Analysis
boostmtreeBoosted Multivariate Trees for Longitudinal Data
boostrqBoosting Regression Quantiles
bootBootstrap Functions (Originally by Angelo Canty for S)
boot.heterogeneityA Bootstrap-Based Heterogeneity Test for Meta-Analysis
boot.pvalBootstrap p-Values
bootCTBootstrapping the ARDL Tests for Cointegration
bootCombCombine Parameter Estimates via Parametric Bootstrap
bootESBootstrap Confidence Intervals on Effect Sizes
bootGOFBootstrap Based Goodness-of-Fit Tests
bootImputeBootstrap Inference for Multiple Imputation
bootLRBootstrapped Confidence Intervals for (Negative) Likelihood Ratio Tests
bootPLSBootstrap Hyperparameter Selection for PLS Models and Extensions
bootSVDFast, Exact Bootstrap Principal Component Analysis for High Dimensional Data
bootStepAICBootstrap stepAIC
bootURBootstrap Unit Root Tests
bootclusterBootstrapping Estimates of Clustering Stability
bootf2Simulation and Comparison of Dissolution Profiles
bootnetBootstrap Methods for Various Network Estimation Routines
bootruinA Bootstrap Test for the Probability of Ruin in the Classical Risk Process
bootstrapFunctions for the Book "An Introduction to the Bootstrap"
bootstrapFPBootstrap Algorithms for Finite Population Inference
bootwarNonparametric Bootstrap Test with Pooled Resampling Card Game
borTransforming Behavioral Observation Records into Data Matrices
boralBayesian Ordination and Regression AnaLysis
borrowrEstimate Causal Effects with Borrowing Between Data Sources
bossRBiomarker Optimal Segmentation System
botor'AWS Python SDK' ('boto3') for R
boundingboxCreate a Bounding Box in an Image
boussinesqAnalytic Solutions for (Ground-Water) Boussinesq Equation
boutliersOutlier Detection and Influence Diagnostics for Meta-Analysis
boxWrite Reusable, Composable and Modular R Code
boxcoxmixBox-Cox-Type Transformations for Linear and Logistic Models with Random Effects
boxfilterFilter Noisy Data
boxlyInteractive Box Plot
boxplotclusterClustering Method Based on Boxplot Statistics
boxplotdblDouble Box Plot for Two-Axes Correlation
boxrInterface for the 'Box.com API'
bpBlood Pressure Analysis in R
bpAccBlood Pressure Device Accuracy Evaluation: Statistical Considerations
bpDirBoxplots for Directional Data
bpaBasic Pattern Analysis
bpboundsNonparametric Bounds for the Average Causal Effect Due to Balke and Pearl and Extensions
bpcaBiplot of Multivariate Data Based on Principal Components Analysis
bpcpBeta Product Confidence Procedure for Right Censored Data
bpgmmBayesian Model Selection Approach for Parsimonious Gaussian Mixture Models
bpmnRSupport for BPMN (Business Process Management Notation) Models
bpmnVisualizationRVisualize Process Execution Data on 'BPMN' Diagrams
bpnregBayesian Projected Normal Regression Models for Circular Data
bppComputations Around Bayesian Predictive Power
bprFitting Bayesian Poisson Regression
bqrorBayesian Quantile Regression for Ordinal Models
bqtlBayesian QTL Mapping Toolkit
braQCABootstrapped Robustness Assessment for Qualitative Comparative Analysis
bracerBrace Expansions
bradaBayesian Response-Adaptive Design Analysis
braggRCalculate the Revealed Aggregator of Probability Predictions
braidReportsVisualize Combined Action Response Surfaces and Report BRAID Analyses
braidrmFitting Dose Response with the BRAID Combined Action Model
braidsThe Braid Groups
brainGraphGraph Theory Analysis of Brain MRI Data
brainKCCARegion-Level Connectivity Network Construction via Kernel Canonical Correlation Analysis
brainRHelper Functions to 'misc3d' and 'rgl' Packages for Brain Imaging
brandwatchR'Brandwatch' API to R
brantTest for Parallel Regression Assumption
brassica1970s BASIC Interpreter
bratteliDeal with Bratteli Graphs
bravoBayesian Screening and Variable Selection
brclimrFetch Zonal Statistics of Weather Indicators for Brazilian Municipalities
breaBayesian Recurrent Event Analysis
breadAnalyze Big Files Without Loading Them in Memory
breakDownModel Agnostic Explainers for Individual Predictions
breakawaySpecies Richness Estimation and Modeling
breakfastMethods for Fast Multiple Change-Point/Break-Point Detection and Estimation
breakpointAn R Package for Multiple Break-Point Detection via the Cross-Entropy Method
breathtestcoreCore Functions to Read and Fit 13c Time Series from Breath Tests
breathteststanStan-Based Fit to Gastric Emptying Curves
brewTemplating Framework for Report Generation
brglmBias Reduction in Binomial-Response Generalized Linear Models
brglm2Bias Reduction in Generalized Linear Models
briKmeansPackage for Brik, Fabrik and Fdebrik Algorithms to Initialise Kmeans
bricksetInterface with the Brickset API for Getting Data About LEGO Sets
bridgedistAn Implementation of the Bridge Distribution with Logit-Link as in Wang and Louis (2003)
bridgerBridge Hand Generator with Criteria Selector
bridger2Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data
bridgesamplingBridge Sampling for Marginal Likelihoods and Bayes Factors
brifA Tree and Forest Tool for Classification and Regression
brintonA Graphical EDA Tool
brioBasic R Input Output
briqrInterface to the 'Briq' API
briskBayesian Benefit Risk Analysis
brlrmrBias Reduction with Missing Binary Response
brmBinary Regression Model
brmsBayesian Regression Models using 'Stan'
brms.mmrmBayesian MMRMs using 'brms'
brmsmarginsBayesian Marginal Effects for 'brms' Models
brnnBayesian Regularization for Feed-Forward Neural Networks
brokenstickBroken Stick Model for Irregular Longitudinal Data
brolgarBrowse Over Longitudinal Data Graphically and Analytically in R
bromanKarl Broman's R Code
broomConvert Statistical Objects into Tidy Tibbles
broom.helpersHelpers for Model Coefficients Tibbles
broom.mixedTidying Methods for Mixed Models
brotliA Compression Format Optimized for the Web
brpopBrazilian Population Estimatives
brsimBrainerd-Robinson Similarity Coefficient Matrix
bruceRBroadly Useful Convenient and Efficient R Functions
bruleeHigh-Level Modeling Functions with 'torch'
brunnermunzel(Permuted) Brunner-Munzel Test
bs4DashA 'Bootstrap 4' Version of 'shinydashboard'
bs4cardsGenerate Bootstrap Cards
bsToolsCreate HTML Content with Bootstrap 5 Classes and Layouts
bsamBayesian State-Space Models for Animal Movement
bsamGPBayesian Spectral Analysis Models using Gaussian Process Priors
bscuiBuild SVG Custom User Interface
bsearchtoolsBinary Search Tools
bsgofBirnbaum-Saunders Goodness-of-Fit Test
bshazardNonparametric Smoothing of the Hazard Function
bsiconsEasily Work with 'Bootstrap' Icons
bsitarBayesian Super Imposition by Translation and Rotation Growth Curve Analysis
bskyrInteract with 'Bluesky' Social
bslibCustom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown'
bsnsingBuild Decision Trees with Optimal Multivariate Splits
bspcovBayesian Sparse Estimation of a Covariance Matrix
bspecBayesian Spectral Inference
bsplineB-Spline Interpolation and Regression
bsplinePsdBayesian Nonparametric Spectral Density Estimation Using B-Spline Priors
bsplusAdds Functionality to the R Markdown + Shiny Bootstrap Framework
bspmBridge to System Package Manager
bspmmaBayesian Semiparametric Models for Meta-Analysis
bsregBayesian Spatial Regression Models
bssmBayesian Inference of Non-Linear and Non-Gaussian State Space Models
bssnBirnbaum-Saunders Model
bstGradient Boosting
bstrlBayesian Streaming Record Linkage
bstsBayesian Structural Time Series
bsubSubmitter and Monitor of the 'LSF Cluster'
bsvarsBayesian Estimation of Structural Vector Autoregressive Models
btbBeyond the Border - Kernel Density Estimation for Urban Geography
btergmTemporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood
bubbleHeatmapProduces 'bubbleHeatmap' Plots for Visualising Metabolomics Data
bubblyrBeautiful Bubbles for 'shiny' and 'rmarkdown' Backgrounds
buildmerStepwise Elimination and Term Reordering for Mixed-Effects Regression
buildrOrganize & Run Build Scripts Comfortably
bujarBuckley-James Regression for Survival Data with High-Dimensional Covariates
bulkAnalyseRInteractive Shiny App for Bulk Sequencing Data
bulkQCQuality Control and Outlier Identification in Bulk for Multicenter Trials
bulkreadrThe Ultimate Tool for Reading Data in Bulk
bulletcpAutomatic Groove Identification via Bayesian Changepoint Detection
bulletrAlgorithms for Matching Bullet Lands
bullishTraderBullish Trading Strategies Through Graphs
bullwhipgameBullwhip Effect Demo in Shiny
bumblTools for Modeling Bumblebee Colony Growth and Decline
bumblebeeQuantify Disease Transmission Within and Between Population Groups
bunchingEstimate Bunching
bunchrAnalyze Bunching in a Kink or Notch Setting
bundesbankDownload Data from Bundesbank
bundesligRAll Final Tables of the Bundesliga
bundleSerialize Model Objects with a Consistent Interface
bupaRBusiness Process Analysis in R
bupaverseEasily Install and Load the 'bupaverse'
burnrForest Fire History Analysis
bursaR Wrapper for Bursa Municipality Open Data Portal
burstsMarkov Model for Bursty Behavior in Streams
busdaterStandard Date Calculations for Business
businessPlanRSimple Modelling Tools for Business Plans
butcherModel Butcher
butterflyOptionsTrading Butterfly Options Strategies
bvarsvBayesian Analysis of a Vector Autoregressive Model with Stochastic Volatility and Time-Varying Parameters
bvartoolsBayesian Inference of Vector Autoregressive and Error Correction Models
bvharBayesian Vector Heterogeneous Autoregressive Modeling
bvlsThe Stark-Parker algorithm for bounded-variable least squares
bvpaBivariate Pareto Distribution
bwdBackward Procedure for Change-Point Detection
bwimageDescribe Image Patterns in Natural Structures
bwsBayesian Weighted Sums
bwsToolsTools for Case 1 Best-Worst Scaling (MaxDiff) Designs
bysykkelGet City Bike Data from Norway
bytescircleStatistics About Bytes Contained in a File as a Circle Plot
bzinbBivariate Zero-Inflated Negative Binomial Model Estimator
C19dNUTSDataset of Regional COVID-19 Deaths per 100,000 Pop (NUTS)
C443See a Forest for the Trees
C50C5.0 Decision Trees and Rule-Based Models
CA3variantsThree-Way Correspondence Analysis Variants
CACIMARCross-Species Analysis of Cell Identities, Markers and Regulations
CADFtestA Package to Perform Covariate Augmented Dickey-Fuller Unit Root Tests
CAGRCompound Annual Growth Rate
CAISErComparison of Algorithms with Iterative Sample Size Estimation
CALANGOComparative Analysis with Annotation-Based Genomic Components
CALFCoarse Approximation Linear Function
CALIBERrfimputeMultiple Imputation Using MICE and Random Forest
CAMANFinite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN
CAMMLCell-Typing using Variance Adjusted Mahalanobis Distances with Multi-Labeling
CANSIM2RDirectly Extracts Complete CANSIM Data Tables
CARBayesSpatial Generalised Linear Mixed Models for Areal Unit Data
CARBayesSTSpatio-Temporal Generalised Linear Mixed Models for Areal Unit Data
CARBayesdataData Used in the Vignettes Accompanying the CARBayes and CARBayesST Packages
CARMCovariate-Adjusted Adaptive Randomization via Mahalanobis-Distance
CARMECAR-MM Modelling in Stan
CARMSContinuous Time Markov Rate Modeling for Reliability Analysis
CARRoTPredicting Categorical and Continuous Outcomes Using One in Ten Rule
CARlassoConditional Autoregressive LASSO
CASCORECovariate Assisted Spectral Clustering on Ratios of Eigenvectors
CASMAPDetection of Statistically Significant Combinations of SNPs in Association Mapping
CASMI'CASMI'-Based Functions
CAST'caret' Applications for Spatial-Temporal Models
CATTThe Cochran-Armitage Trend Test
CATTexactComputation of the p-Value for the Exact Conditional Cochran-Armitage Trend Test
CAinterprToolsGraphical Aid in Correspondence Analysis Interpretation and Significance Testings
CAvariantsCorrespondence Analysis Variants
CB2CRISPR Pooled Screen Analysis using Beta-Binomial Test
CBCgrpsCompare Baseline Characteristics Between Groups
CBPSCovariate Balancing Propensity Score
CBSrFits Cubic Bezier Spline Functions to Intertemporal and Risky Choice Data
CBTConfidence Bound Target Algorithm
CBnetworkMAContrast-Based Bayesian Network Meta Analysis
CCControl Charts
CCACanonical Correlation Analysis
CCAMLRGISAntarctic Spatial Data Manipulation
CCMCorrelation Classification Method
CCMMRMinimization of the Convex Clustering Loss Function
CCPSignificance Tests for Canonical Correlation Analysis (CCA)
CCTpackConsensus Analysis, Model-Based Clustering, and Cultural Consensus Theory Applications
CCWeightsPerform Weighted Linear Regression for Calibration Curve
CDCPLACESAccess the 'CDC PLACES' API
CDFtDownscaling and Bias Correction via Non-Parametric CDF-Transform
CDMCognitive Diagnosis Modeling
CDMConnectorConnect to an OMOP Common Data Model
CDSE'Copernicus Data Space Ecosystem' API Wrapper
CDSSCourse-Dependent Skill Structures
CDVICuddy-Della Valle Index for Capturing the Instability in Time Series Data
CDVineCopulaConditionalSampling from Conditional C- and D-Vine Copulas
CDatanetEconometrics of Network Data
CECCross-Entropy Clustering
CEDACRISPR Screen and Gene Expression Differential Analysis
CEEMDANMLCEEMDAN Decomposition Based Hybrid Machine Learning Models
CEGOCombinatorial Efficient Global Optimization
CEOdataDatasets of the CEO (Centre d'Estudis d'Opinio) for Opinion Polls in Catalonia
CERFITCausal Effect Random Forest of Interaction Tress
CEoptimCross-Entropy R Package for Optimization
CFAcoopColony Formation Assay: Taking into Account Cellular Cooperation
CFCCause-Specific Framework for Competing-Risk Analysis
CFFSimple Similarity for User-Based Collaborative Filtering Systems
CFOCFO-Type Designs in Phase I Clinical Trials
CFiltCollaborative Filtering by Reference Classes
CFtimeUsing CF-Compliant Calendars with Climate Projection Data
CGEComputing General Equilibrium
CGGPComposite Grid Gaussian Processes
CGManalyzerContinuous Glucose Monitoring Data Analyzer
CGNMCluster Gauss-Newton Method
CGPComposite Gaussian Process Models
CGPfunctionsPowell Miscellaneous Functions for Teaching and Learning Statistics
CGRCompound Growth Rate for Capturing the Growth Rate Over the Period
CHEMISTCausal Inference with High-Dimensional Error-Prone Covariates and Misclassified Treatments
CHFFClosest History Flow Field Forecasting for Bivariate Time Series
CHMMCoupled Hidden Markov Models
CHNCapitalStockCompute Chinese Capital Stocks
CHNOSZThermodynamic Calculations and Diagrams for Geochemistry
CHOIRBMPlots the CHOIR Body Map
CIAAWconsensusIsotope Ratio Meta-Analysis
CIARACluster Independent Algorithm for Rare Cell Types Identification
CICAClusterwise Independent Component Analysis
CICICausal Inference with Continuous (Multiple Time Point) Interventions
CIEEEstimating and Testing Direct Effects in Directed Acyclic Graphs using Estimating Equations
CIMCompositional Impact of Migration
CIMTxCausal Inference for Multiple Treatments with a Binary Outcome
CINEClassification International Normalized of Education
CINIDCurculionidae INstar IDentification
CINNADeciphering Central Informative Nodes in Network Analysis
CINmetricsCalculate Chromosomal Instability Metrics
CIPermComputationally-Efficient Confidence Intervals for Mean Shift from Permutation Methods
CIS.DGLMCovariates, Interaction, and Selection for DGLM
CITANCITation ANalysis Toolpack
CIfinderEstimate the Confidence Intervals for Predictive Values
CIplotFunctions to Plot Confidence Interval
CJAMPCopula-Based Joint Analysis of Multiple Phenotypes
CJIVECanonical Joint and Individual Variation Explained (CJIVE)
CKATComposite Kernel Association Test for Pharmacogenetics Studies
CKLRTComposite Kernel Machine Regression Based on Likelihood Ratio Test
CKMRpopForward-in-Time Simulation and Tallying of Pairwise Relationships
CLACritical Line Algorithm in Pure R
CLASTExact Confidence Limits after a Sequential Trial
CLMEConstrained Inference for Linear Mixed Effects Models
CLONETv2Clonality Estimates in Tumor
CLSIEP15Clinical and Laboratory Standards Institute (CLSI) EP15-A3 Calculations
CLUSTShinyInteractive Document for Working with Cluster Analysis
CLVToolsTools for Customer Lifetime Value Estimation
CLimdGenerating Rainfall Rasters from IMD NetCDF Data
CMAPSSCommercial Modular Aero-Propulsion System Simulation Data Set
CMFCollective Matrix Factorization
CMFsurrogateCalibrated Model Fusion Approach to Combine Surrogate Markers
CMHNPACochran-Mantel-Haenszel and Nonparametric ANOVA
CMLSConstrained Multivariate Least Squares
CMMsCompositional Mediation Model
CMShinyInteractive Document for Working with Confusion Matrix
CMapVizRepresentation Tool For Output Of Connectivity Map (CMap) Analysis
CMplotCircle Manhattan Plot
CNAIMCommon Network Asset Indices Methodology (CNAIM)
CNIDGet Basic Information from Chinese ID Number
CNLTregComplex-Valued Wavelet Lifting for Signal Denoising
CNLTtsaComplex-Valued Wavelet Lifting for Univariate and Bivariate Time Series Analysis
CNPSNonparametric Statistics
CNVRGDirichlet Multinomial Modeling of Relative Abundance Data
CNVScopeA Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization
CNprepPre-Process DNA Copy Number (CN) Data for Detection of CN Events
COAPHigh-Dimensional Covariate-Augmented Overdispersed Poisson Factor Model
COCONUTCOmbat CO-Normalization Using conTrols (COCONUT)
COINrComposite Indicator Construction and Analysis
COLPCausal Discovery for Categorical Data with Label Permutation
COMBATA Combined Association Test for Genes using Summary Statistics
COMBOCorrecting Misclassified Binary Outcomes in Association Studies
COMIXCoarsened Mixtures of Hierarchical Skew Kernels
COMPoissonRegConway-Maxwell Poisson (COM-Poisson) Regression
CONCURCopy Number Profile Curve-Based Association Test
CORThe COR for Optimal Subset Selection in Distributed Estimation
CORECores of Recurrent Events
CORElearnClassification, Regression and Feature Evaluation
COSTCopula-Based Semiparametric Models for Spatio-Temporal Data
COUNTFunctions, Data and Code for Count Data
COVID19R Interface to COVID-19 Data Hub
COVIDIBGEDownloading, Reading and Analyzing PNAD COVID19 Microdata
CPConditional Power Calculations
CPATChange Point Analysis Tests
CPBayesBayesian Meta Analysis for Studying Cross-Phenotype Genetic Associations
CPCImplementation of Cluster-Polarization Coefficient
CPEConcordance Probability Estimates in Survival Analysis
CPGLIBCompeting Proximal Gradients Library
CPMCGLMCorrection of the P-Value after Multiple Coding in Generalized Linear Models
CPNCoverageAnalysisConceptual Properties Norming Studies as Parameter Estimation
CPPComposition of Probabilistic Preferences (CPP)
CPsurvNonparametric Change Point Estimation for Survival Data
CR2Compute Cluster Robust Standard Errors with Degrees of Freedom Adjustments
CRABSCongruent Rate Analyses in Birth-Death Scenarios
CRANsearcherRStudio Addin for Searching Packages in CRAN Database Based on Keywords
CREInterpretable Discovery and Inference of Heterogeneous Treatment Effects
CREAMClustering of Genomic Regions Analysis Method
CREDSCalibrated Ratio Estimator under Double Sampling Design
CRFConditional Random Fields
CRMContinual Reassessment Method (CRM) for Phase I Clinical Trials
CRMetricsCell Ranger Output Filtering and Metrics Visualization
CRTConjointConditional Randomization Testing (CRT) Approach for Conjoint Analysis
CRTSizeSample Size Estimation Functions for Cluster Randomized Trials
CRTgeeDRDoubly Robust Inverse Probability Weighted Augmented GEE Estimator
CRTspatWorkflow for Cluster Randomised Trials with Spillover
CRWRMChanging the Reference Group without Re-Running the Model
CRediTasGenerate CRediT Author Statements
CSCNetFitting and Tuning Regularized Cause-Specific Cox Models with Elastic-Net Penalty
CSESACRISPR-Based Salmonella Enterica Serotype Analyzer
CSGoCollecting Counter Strike Global Offensive Data
CSHShydRologyCanadian Hydrological Analyses
CSIndicatorsClimate Services' Indicators Based on Sub-Seasonal to Decadal Predictions
CSMESCost-Sensitive Multi-Criteria Ensemble Selection for Uncertain Cost Conditions
CSToolsAssessing Skill of Climate Forecasts on Seasonal-to-Decadal Timescales
CScloneBayesian Nonparametric Modeling in R
CSeqpatFrequent Contiguous Sequential Pattern Mining of Text
CTAShinyInteractive Application for Working with Contingency Tables
CTDA Method for 'Connecting The Dots' in Weighted Graphs
CTMA Text Mining Toolkit for Chinese Document
CTNoteCTN Outcomes, Treatments, and Endpoints
CTShinyInteractive Document for Working with Classification Tree Analysis
CTShiny2Interactive Document for Working with Classification Tree Analysis
CTTClassical Test Theory Functions
CTTShinyClassical Test Theory via Shiny
CTTinShinyShiny Interface for the CTT Package
CUBA Class of Mixture Models for Ordinal Data
CUFFCharles's Utility Function using Formula
CUMPAnalyze Multivariate Phenotypes by Combining Univariate Results
CUSUMdesignCompute Decision Interval and Average Run Length for CUSUM Charts
CVDColor Vision Deficiencies
CVRCanonical Variate Regression
CVSTFast Cross-Validation via Sequential Testing
CVThreshLevel-Dependent Cross-Validation Thresholding
CVXRDisciplined Convex Optimization
CVglassoLasso Penalized Precision Matrix Estimation
CVriskCompute Risk Scores for Cardiovascular Diseases
CaDENCEConditional Density Estimation Network Construction and Evaluation
CaPO4SimA Virtual Patient Simulator in the Context of Calcium and Phosphate Homeostasis
CairoR Graphics Device using Cairo Graphics Library for Creating High-Quality Bitmap (PNG, JPEG, TIFF), Vector (PDF, SVG, PostScript) and Display (X11 and Win32) Output
CalSimThe Calibration Simplex
CalcThemAll.PRMCalculate Pesticide Risk Metric (PRM) Values from Multiple Pesticides...Calc Them All
Calculator.LR.FNsCalculator for LR Fuzzy Numbers
CalibratRMapping ML Scores to Calibrated Predictions
CalibrateSSBWeighting and Estimation for Panel Data with Non-Response
CalibrationCurvesCalibration Performance
CamelUp'CamelUp' Board Game as a Teaching Aid for Introductory Statistics
CancerEvolutionVisualizationPublication Quality Phylogenetic Tree Plots
CancerGramPrediction of Anticancer Peptides
CanekBatch Correction of Single Cell Transcriptome Data
CanopyAccessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing
CarletonStatsFunctions for Statistics Classes at Carleton College
CarlsonCarlson Elliptic Integrals and Incomplete Elliptic Integrals
CascadeSelection, Reverse-Engineering and Prediction in Cascade Networks
CascadeDataExperimental Data of Cascade Experiments in Genomics
CaseBasedReasoningCase Based Reasoning
CaseCohortCoxSurvivalCase-Cohort Cox Survival Inference
CatDataAnalysisDatasets for Categorical Data Analysis by Agresti
CatDynFishery Stock Assessment by Catch Dynamics Models
CatEncodersEncoders for Categorical Variables
CatPrediOptimal Categorisation of Continuous Variables in Prediction Models
CatRegSolution Paths for Linear and Logistic Regression Models with Categorical Predictors, with SCOPE Penalty
CatastRoInterface to the API 'Sede Electronica Del Catastro'
CauchyCPPowerful Test for Survival Data under Non-Proportional Hazards
CausCorCalculate Correlations and Estimate Causality
CausalGAMEstimation of Causal Effects with Generalized Additive Models
CausalGPSMatching on Generalized Propensity Scores with Continuous Exposures
CausalImpactInferring Causal Effects using Bayesian Structural Time-Series Models
CausalMBSTSMBSTS Models for Causal Inference and Forecasting
CausalMetaRCausally Interpretable Meta-Analysis
CausalModelsCausal Inference Modeling for Estimation of Causal Effects
CausalQueriesMake, Update, and Query Binary Causal Models
CautiousLearningControl Charts with Guaranteed In-Control Performance and Cautious Parameters Learning
CePaCentrality-Based Pathway Enrichment
CeRNASeekIdentification and Analysis of ceRNA Regulation
CenBARBroken Adaptive Ridge AFT Model with Censored Data
CensMFMFinite Mixture of Multivariate Censored/Missing Data
CensSpatialCensored Spatial Models
Census2016Data from the Australian Census 2016
CerioliOutlierDetectionOutlier Detection Using the Iterated RMCD Method of Cerioli (2010)
Certara.NLME8Utilities for Certara's Nonlinear Mixed-Effects Modeling Engine
Certara.REasily Install Pharmacometric Packages and Shiny Applications Developed by Certara
ChainLadderStatistical Methods and Models for Claims Reserving in General Insurance
ChangepointTestingChange Point Estimation for Clustered Signals
ChannelAttributionMarkov Model for Online Multi-Channel Attribution
ChannelAttributionAppShiny Web Application for the Multichannel Attribution Problem
Chaos010-1 Test for Chaos
ChaosGameChaos Game
CheckDigitCalculate and Verify Check Digits
ChemoSpecExploratory Chemometrics for Spectroscopy
ChemoSpec2DExploratory Chemometrics for 2D Spectroscopy
ChemoSpecUtilsFunctions Supporting Packages ChemoSpec and ChemoSpec2D
ChernoffDistChernoff's Distribution
ChillModelsProcessing Chill and Heat Models for Temperate Fruit Trees
ChineseNamesChinese Name Database 1930-2008
ChoRChordalysis R Package
ChoiceModelRChoice Modeling in R
CholWishartCholesky Decomposition of the Wishart Distribution
CircMLEMaximum Likelihood Analysis of Circular Data
CircNNTSRStatistical Analysis of Circular Data using Nonnegative Trigonometric Sums (NNTS) Models
CircNNTSRmultMultivariate Circular Data using MNNTS Models
CircOutlierDetection of Outliers in Circular-Circular Regression
CircSpaceTimeSpatial and Spatio-Temporal Bayesian Model for Circular Data
CircStatsCircular Statistics, from "Topics in Circular Statistics" (2001)
CirceRConstruct Cohort Inclusion and Restriction Criteria Expressions
CirclesIntersectionsAlgorithm for Computation of the Intersection Areas of N Circles
CircularDDMCircular Drift-Diffusion Model
CircularSilhouetteFast Silhouette on Circular or Linear Data Clusters
Ckmeans.1d.dpOptimal, Fast, and Reproducible Univariate Clustering
CladdisMeasuring Morphological Diversity and Evolutionary Tempo
ClaimsProblemsAnalysis of Conflicting Claims
ClamRTime Series Modeling for Climate Change Proxies
ClassComparisonClasses and Methods for "Class Comparison" Problems on Microarrays
ClassDiscoveryClasses and Methods for "Class Discovery" with Microarrays or Proteomics
CleanBSequencesCuring of Biological Sequences
ClickClustModel-Based Clustering of Categorical Sequences
ClickClustContMixtures of Continuous Time Markov Models
ClickHouseHTTPA Simple HTTP Database Interface to 'ClickHouse'
CliftLRDComplex-Valued Wavelet Lifting Estimators of the Hurst Exponent for Irregularly Sampled Time Series
ClimClassClimate Classification According to Several Indices
ClimIndClimate Indices
ClimMobToolsAPI Client for the 'ClimMob' Platform
ClimProjDiagsSet of Tools to Compute Various Climate Indices
ClinSigMeasuresClinical Significance Measures
ClinicalTrialSummarySummary Measures for Clinical Trials with Survival Outcomes
ClinicalUtilityRecalRecalibration Methods for Improved Clinical Utility of Risk Scores
CliquePercolationClique Percolation for Networks
CloneSeekerSeeking and Finding Clones in Copy Number and Sequencing Data
CluMPClustering of Micro Panel Data
ClueRCluster Evaluation
ClusBootBootstrap a Clustering Solution to Establish the Stability of the Clusters
ClusPredSimultaneous Semi-Parametric Estimation of Clustering and Regression
ClusROCROC Analysis in Three-Class Classification Problems for Clustered Data
ClusTorusPrediction and Clustering on the Torus by Conformal Prediction
ClusVisGaussian-Based Visualization of Gaussian and Non-Gaussian Model-Based Clustering
ClussClusterSimultaneous Detection of Clusters and Cluster-Specific Genes in High-Throughput Transcriptome Data
ClustAssessTools for Assessing Clustering
ClustBlockClustering of Datasets
ClustGeoHierarchical Clustering with Spatial Constraints
ClustImputeK-Means Clustering with Build-in Missing Data Imputation
ClustOfVarClustering of Variables
ClustVarLVClustering of Variables Around Latent Variables
Cluster.OBeuCluster Analysis 'OpenBudgets.eu'
ClusterBootstrapAnalyze Clustered Data with Generalized Linear Models using the Cluster Bootstrap
ClusterRGaussian Mixture Models, K-Means, Mini-Batch-Kmeans, K-Medoids and Affinity Propagation Clustering
ClusterRankTestRank Tests for Clustered Data
ClusterStabilityAssessment of Stability of Individual Objects or Clusters in Partitioning Solutions
ClusteredMutationsLocation and Visualization of Clustered Somatic Mutations
ClusteringTechniques for Evaluating Clustering
CoClustCopula Based Cluster Analysis
CoDaImpactInterpreting CoDa Regression Models
CoDiNACo-Expression Differential Network Analysis
CoFRAComplete Functional Regulation Analysis
CoImpParametric and Non-Parametric Copula-Based Imputation Methods
CoMiReConvex Mixture Regression
CoNICorrelation Guided Network Integration (CoNI)
CoOLCauses of Outcome Learning
CoRpowerPower Calculations for Assessing Correlates of Risk in Clinical Efficacy Trials
CoSMoSComplete Stochastic Modelling Solution
CoastlineFDCalculation of the Fractal Dimension of a Coastline
CodataGSGenomic Prediction Using SNP Codata
CodeDependsAnalysis of R Code for Reproducible Research and Code Comprehension
CodelistGeneratorIdentify Relevant Clinical Codes and Evaluate Their Use
CohensdpLibraryCohen's D_p Computation with Confidence Intervals
CohortAlgebraUse of Interval Algebra to Create New Cohort(s) from Existing Cohorts
CohortCharacteristicsSummarise and Visualise Characteristics of Patients in the OMOP CDM
CohortExplorerExplorer of Profiles of Patients in a Cohort
CohortPlatSimulation of Cohort Platform Trials for Combination Treatments
CohortSurvivalEstimate Survival from Common Data Model Cohorts
CoinprofileCoincident Profile
CollapseLevelsCollapses Levels, Computes Information Value and WoE
CollocInferCollocation Inference for Dynamic Systems
ColorNameRGive Colors a Name
Colossus"Risk Model Regression and Analysis with Complex Non-Linear Models"
ComICSComputational Methods for Immune Cell-Type Subsets
ComRiskModelFitting of Complementary Risk Models
CombinSConstruction Methods of some Series of PBIB Designs
CombinePortfolioEstimation of Optimal Portfolio Weights by Combining Simple Portfolio Strategies
CommKernNetwork-Based Communities and Kernel Machine Methods
CommonDataModelOMOP CDM DDL and Documentation Generator
CommonJavaJarsUseful Libraries for Building a Java Based GUI under R
CommonMean.CopulaCommon Mean Vector under Copula Models
Comp2ROCCompare Two ROC Curves that Intersect
CompAREdesignStatistical Functions for the Design of Studies with Composite Endpoints
CompDistMultisection Composite Distributions
CompExpDesComputer Experiment Designs
CompGRComplete Annual Growth Rate Generator
CompModelsPseudo Computer Models for Optimization
CompParetoDiscrete Composite Distributions with Pareto Tails
CompQuadFormDistribution Function of Quadratic Forms in Normal Variables
CompRPaired Comparison Data Analysis
CompareCausalNetworksInterface to Diverse Estimation Methods of Causal Networks
CompareMultipleModelsFinding the Best Model Using Eight Metrics Values
CompareTestsCorrect for Verification Bias in Diagnostic Accuracy & Agreement
ComparisonSurvComparison of Survival Curves Between Two Groups
CompindComposite Indicators Functions
ComplexUpsetCreate Complex UpSet Plots Using 'ggplot2' Components
CompositeReliabilityDetermine the Composite Reliability of a Naturalistic, Unbalanced Dataset
CompositionalCompositional Data Analysis
CompositionalMLMachine Learning with Compositional Data
CompoundEventsStatistical Modeling of Compound Events
ConConPiWiFunOptimisation with Continuous Convex Piecewise (Linear and Quadratic) Functions
ConNEcTContingency Measure-Based Networks for Binary Time Series
ConSplinePartial Linear Least-Squares Regression using Constrained Splines
ConakeContinuous Associated Kernel Estimation
ConconiAnaerobicThresholdTestConconi Estimate of Anaerobic Threshold from a TCX File
ConcordanceTestAn Alternative to the Kruskal-Wallis Based on the Kendall Tau Distance
CondCopulasEstimation and Inference for Conditional Copula Models
CondIndTestsNonlinear Conditional Independence Tests
CondMVTConditional Multivariate t Distribution, Expectation Maximization Algorithm, and Its Stochastic Variants
CondiSCensored Data Imputation for Direct Modeling
ConfIntVarianceConfidence Interval for the Univariate Population Variance without Normality Assumption
ConfZICConfidence Envelopes for Model Selection Criteria Based on Minimum ZIC
ConfidenceEllipseComputation of 2D and 3D Elliptical Joint Confidence Regions
ConfigParserPackage to Parse an INI File, Including Variable Interpolation
ConformalSmallestEfficient Tuning-Free Conformal Prediction
ConfusionTableRConfusion Matrix Toolset
CongreveLamsdell2016Distance Metrics for Trees Generated by Congreve and Lamsdell
ConigraveFlexible Tools for Multiple Imputation
ConnMatToolsTools for Working with Connectivity Data
ConnectednessApproachConnectedness Approach
ConsRankCompute the Median Ranking(s) According to the Kemeny's Axiomatic Approach
ConsRankClassClassification and Clustering of Preference Rankings
ConsRegFits Regression & ARMA Models Subject to Constraints to the Coefficient
ConsensusClusteringConsensus Clustering
ContRespPPPredictive Probability for a Continuous Response with an ANOVA Structure
ContaminatedMixtClustering and Classification with the Contaminated Normal
ContourFunctionsCreate Contour Plots from Data or a Function
ConvergenceClubsFinding Convergence Clubs
ConvergenceConceptsSeeing Convergence Concepts in Action
ConvertParEstimating IRT Parameters via Machine Learning Algorithms
ConvolutionerConvolution of Data
CooRTweetCoordinated Networks Detection on Social Media
CooccurrenceAffinityAffinity in Co-Occurrence Data
CoopGameImportant Concepts of Cooperative Game Theory
CoordinateCleanerAutomated Cleaning of Occurrence Records from Biological Collections
CopCTSCopula-Based Semiparametric Analysis for Time Series Data with Detection Limits
CopSensCopula-Based Sensitivity Analysis for Observational Causal Inference
CopernicusDEMCopernicus Digital Elevation Models
CopernicusMarineSearch Download and Handle Data from Copernicus Marine Service Information
Copula.MarkovCopula-Based Estimation and Statistical Process Control for Serially Correlated Time Series
Copula.Markov.survivalCopula Markov Model with Dependent Censoring
Copula.survAnalysis of Bivariate Survival Data Based on Copulas
CopulaCenRCopula-Based Regression Models for Multivariate Censored Data
CopulaGAMMCopula-Based Mixed Regression Models
CopulaInferenceEstimation and Goodness-of-Fit of Copula-Based Models with Arbitrary Distributions
CopulaREMADACopula Mixed Models for Multivariate Meta-Analysis of Diagnostic Test Accuracy Studies
CorBinGenerate High-Dimensional Binary Data with Correlation Structures
CorMIDCorrect Mass Isotopologue Distribution Vectors
CorbiCollection of Rudimentary Bioinformatics Tools
CoreMicrobiomeRIdentification of Core Microbiome
CornerstoneRCollection of Scripts for Interface Between 'Cornerstone' and 'R'
CoronaNetRAPI Access to 'CoronaNet' Data
CorrBinNonparametrics with Clustered Binary and Multinomial Data
CorrMixedEstimate Correlations Between Repeatedly Measured Endpoints (E.g., Reliability) Based on Linear Mixed-Effects Models
CorrToolBoxModeling Correlational Magnitude Transformations in Discretization Contexts
CorrectOverloadedPeaksCorrect Overloaded Peaks from GC-APCI-MS Data
CorrectedFDRCorrecting False Discovery Rates
CorrelplotA Collection of Functions for Graphing Correlation Matrices
CounterfactualEstimation and Inference Methods for Counterfactual Analysis
CounternullRandomization-Based Inference
CountrFlexible Univariate Count Models Based on Renewal Processes
CountsEPPMMean and Variance Modeling of Count Data
CovCombRCombine Partial Covariance / Relationship Matrices
CovRegRFCovariance Regression with Random Forests
CovSelModel-Free Covariate Selection
CovToolsStatistical Tools for Covariance Analysis
CovidMutationsMutation Analysis Toolkit for COVID-19 (Coronavirus Disease 2019)
CoxAIPWDoubly Robust Inference for Cox Marginal Structural Model with Informative Censoring
CoxBcvBias-Corrected Sandwich Variance Estimators for Marginal Cox Analysis of Cluster Randomized Trials
CoxICPenVariable Selection for Cox's Model with Interval-Censored Data
CoxPlusCox Regression (Proportional Hazards Model) with Multiple Causes and Mixed Effects
CoxR2R-Squared Measure Based on Partial LR Statistic, for the Cox PH Regression Model
CoxmosCox MultiBlock Survival
CpGFilterCpG Filtering Method Based on Intra-Class Correlation Coefficients
CpGassocAssociation Between Methylation and a Phenotype of Interest
CpmERCCutoffCalculation of Log2 Counts per Million Cutoff from ERCC Controls
CptNonParNonparametric Change Point Detection for Multivariate Time Series
CreditRiskEvaluation of Credit Risk with Structural and Reduced Form Models
CronbachCronbach's Alpha
CropScapeRAccess Cropland Data Layer Data via the 'CropScape' Web Service
CropWaterBalanceClimate Water Balance for Irrigation Purposes
CrossCarryAnalysis of Data from a Crossover Design with GEE
CrossClusteringA Partial Clustering Algorithm
CrossVAVerbal Autopsy Data Transformation for InSilicoVA and InterVA5 Algorithms
CrossValidateClasses and Methods for Cross Validation of "Class Prediction" Algorithms
CrossoverAnalysis and Search of Crossover Designs
Crosstabs.LoglinearCross Tabulation and Loglinear Analyses of Categorical Data
CruzPlotPlot Shipboard DAS Data
CryptRndTestStatistical Tests for Cryptographic Randomness
CsChangeTesting for Change in C-Statistic
CubistRule- And Instance-Based Regression Modeling
CureAuxSPMixture Cure Models with Auxiliary Subgroup Survival Probabilities
CureDepCensDependent Censoring Regression Models with Cure Fraction
CustomDerivativePricing Various Types of Custom Derivatives
CustomerScoringMetricsEvaluation Metrics for Customer Scoring Models Depending on Binary Classifiers
CustosAscensorCosts Allocation for the Installation of an Elevator
CutpointsOEHROptimal Equal-HR Method to Find Two Cutpoints for U-Shaped Relationships in Cox Model
CvmortalityMultCross-Validation for Multi-Population Mortality Models
CyclopsCyclic Coordinate Descent for Logistic, Poisson and Survival Analysis
CytOpTOptimal Transport for Gating Transfer in Cytometry Data with Domain Adaptation
CytoSimplexSimplex Visualization of Cell Fate Similarity in Single-Cell Data
CytobankAPICytobank API Wrapper for R
c060Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models
c212Methods for Detecting Safety Signals in Clinical Trials Using Body-Systems (System Organ Classes)
c2cCompare Two Classifications or Clustering Solutions of Varying Structure
c2zA Reference Manager
c3'C3.js' Chart Library
c3netInferring Large-Scale Gene Networks with C3NET
cAIC4Conditional Akaike Information Criterion for 'lme4' and 'nlme'
cIRTChoice Item Response Theory
cNORMContinuous Norming
cOdeAutomated C Code Generation for 'deSolve', 'bvpSolve'
cPCGEfficient and Customized Preconditioned Conjugate Gradient Method for Solving System of Linear Equations
cPseudoMaRgConstructs a Correlated Pseudo-Marginal Sampler
cSEMComposite-Based Structural Equation Modeling
cTOSTFinite Sample Correction of the Two One-Sided Tests in the Univariate Framework
caSimple, Multiple and Joint Correspondence Analysis
caROCContinuous Biomarker Evaluation with Adjustment of Covariates
caRamelAutomatic Calibration by Evolutionary Multi Objective Algorithm
caRecallGovernment of Canada Vehicle Recalls Database API Wrapper
caToolsTools: Moving Window Statistics, GIF, Base64, ROC AUC, etc
cabinetsProject Specific Workspace Organization Templates
cabootcrsBootstrap Confidence Regions for Simple and Multiple Correspondence Analysis
cacIRTClassification Accuracy and Consistency under Item Response Theory
caccConjunctive Analysis of Case Configurations
cacheCache and Retrieve Computation Results
cachemCache R Objects with Automatic Pruning
caesarEncrypts and Decrypts Strings
caffsimSimulation of Plasma Caffeine Concentrations by Using Population Pharmacokinetic Model
calACSCalculations for All Common Subsequences
calcUniqueSimple Wrapper for Computationally Expensive Functions
calculusHigh Dimensional Numerical and Symbolic Calculus
calendRReady to Print Monthly and Yearly Calendars Made with 'ggplot2'
calendRio'calendR' Fork with Additional Features (Backwards Compatible)
calendarCreate, Read, Write, and Work with 'iCalander' Files, Calendars and Scheduling Data
calibmsmCalibration Plots for the Transition Probabilities from Multistate Models
calibrarAutomated Parameter Estimation for Complex Models
calibrateCalibration of Scatterplot and Biplot Axes
calibrateBinaryCalibration for Computer Experiments with Binary Responses
calibrationbandCalibration Bands
calibratorBayesian Calibration of Complex Computer Codes
calidadAssesses the Quality of Estimates Made by Complex Sample Designs
callbackComputes Statistics from Discrimination Experimental Data
callrCall R from R
callsyncRecording Synchronisation, Call Detection and Assignment, Audio Analysis
calmateImproved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation
calmrCanonical Associative Learning Models and their Representations
calpassapiR Interface to Access CalPASS API
camcorderRecord Your Plot History
camerondataDatasets from "Microeconometrics: Methods and Applications" by Cameron and Trivedi
campaignmanageRConnect to Campaign Manager via the 'Windsor.ai' API
campfinWrangle Campaign Finance Data
campsisGeneric PK/PD Simulation Platform CAMPSIS
campsismodGeneric Implementation of a PK/PD Model
camsRadClient for CAMS Radiation Service
camtrapRCamera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses
canadamapsMaps of the Political and Administrative Divisions of Canada
canadianmapsEffortlessly Create Stunning Canadian Maps
canaperCategorical Analysis of Neo- And Paleo-Endemism
cancensusAccess, Retrieve, and Work with Canadian Census Data and Geography
cancerGIAnalyses of Cancer Gene Interaction
cancerscreeningStreamline Access to Cancer Screening Data
candiscVisualizing Generalized Canonical Discriminant and Canonical Correlation Analysis
canprotChemical Analysis of Proteins
cansimAccessing Statistics Canada Data Table and Vectors
canvasXpressVisualization Package for CanvasXpress in R
canvasXpress.dataDatasets for the 'canvasXpress' Package
capeCombined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice
caperComparative Analyses of Phylogenetics and Evolution in R
capitalRCapital Budgeting Analysis, Annuity Loan Calculations and Amortization Schedules
caplCompute and Visualize CAPL-2 Scores and Interpretations
caplotCorrespondence Analysis with Geometric Frequency Interpretation
capmCompanion Animal Population Management
capnCapital Asset Pricing for Nature
captrClient for the Captricity API
capusheCAlibrating Penalities Using Slope HEuristics
carCompanion to Applied Regression
carDataCompanion to Applied Regression Data Sets
carSurvCorrelation-Adjusted Regression Survival (CARS) Scores
caracasComputer Algebra
caratCovariate-Adaptive Randomization for Clinical Trials
carbonateInteract with 'carbon.js'
carbondateCalibration and Summarisation of Radiocarbon Dates
carcassEstimation of the Number of Fatalities from Carcass Searches
cardCardiovascular and Autonomic Research Design
cardidatesIdentification of Cardinal Dates in Ecological Time Series
cardinalRCollection of Data Structures
cardsAnalysis Results Data
cardxExtra Analysis Results Data Utilities
careHigh-Dimensional Regression and CAR Score Variable Selection
care4cmodelCarbon-Related Assessment of Silvicultural Concepts
carelessProcedures for Computing Indices of Careless Responding
caresidCorrespondence Analysis Plot and Associations Visualisation
caretClassification and Regression Training
caretEnsembleEnsembles of Caret Models
caretForecastConformal Time Series Forecasting Using State of Art Machine Learning Algorithms
carfimaContinuous-Time Fractionally Integrated ARMA Process for Irregularly Spaced Long-Memory Time Series Data
cargoDevelop R Packages using Rust
caribouEstimation of Caribou Abundance Based on Radio Telemetry Data
carolineA Collection of Database, Data Structure, Visualization, and Utility Functions for R
carpenterBuild Common Tables of Summary Statistics for Reports
carrierIsolate Functions for Remote Execution
cartograflowFiltering Matrix for Flow Mapping
cartogramCreate Cartograms with R
cartogramRContinuous Cartogram
cartographerTurn Place Names into Map Data
cartographyThematic Cartography
casabourseCasablanca Stock Exchange Data
cascadeSelectA Cascade Select Input for 'Shiny'
cascsimCasualty Actuarial Society Individual Claim Simulator
caseMatchIdentify Similar Cases for Qualitative Case Studies
casebaseFitting Flexible Smooth-in-Time Hazards and Risk Functions via Logistic and Multinomial Regression
casesStratified Evaluation of Subgroup Classification Accuracy
casinoPlay Casino Games
cassowaryrCompute Scagnostics on Pairs of Numeric Variables in a Data Set
castorEfficient Phylogenetics on Large Trees
catAnalysis and Imputation of Categorical-Variable Datasets with Missing Values
cat2catHandling an Inconsistently Coded Categorical Variable in a Longitudinal Dataset
catIrtSimulate IRT-Based Computerized Adaptive Tests
catRGeneration of IRT Response Patterns under Computerized Adaptive Testing
catSurvComputerized Adaptive Testing for Survey Research
cataAnalysis of Check-All-that-Apply (CATA) Data
catalogAccess the 'Spark Catalog' API via 'sparklyr'
catchCovariate-Adjusted Tensor Classification in High-Dimensions
catcontTest, Identify, Select and Mutate Categorical or Continuous Values
catdapCategorical Data Analysis Program Package
catdataCategorical Data
categoryEncodingsCategory Variable Encodings
catfunCategorical Data Analysis
catiCommunity Assembly by Traits: Individuals and Beyond
catlearnFormal Psychological Models of Categorization and Learning
catmapCase-Control and TDT Meta-Analysis Package
catmaplyHeatmap for Categorical Data using 'plotly'
catsCohort Platform Trial Simulation
catseyesCreate Catseye Plots Illustrating the Normal Distribution of the Means
catsimBinary and Categorical Image Similarity Index
cauchypcaRobust Principal Component Analysis Using the Cauchy Distribution
cauphyTrait Evolution on Phylogenies Using the Cauchy Process
causactFast, Easy, and Visual Bayesian Inference
causal.decompCausal Decomposition Analysis
causalBatchCausal Batch Effects
causalCmprskNonparametric and Cox-Based Estimation of Average Treatment Effects in Competing Risks
causalDiscoTools for Causal Discovery on Observational Data
causalHyperGraphDrawing Causal Hypergraphs
causalOTOptimal Transport Weights for Causal Inference
causalPAFCausal Effect for Population Attributable Fractions (PAF)
causalSLSESemiparametric Least Squares Inference for Causal Effects
causaldataExample Data Sets for Causal Inference Textbooks
causaldrfEstimating Causal Dose Response Functions
causaleffectDeriving Expressions of Joint Interventional Distributions and Transport Formulas in Causal Models
causaloptimAn Interface to Specify Causal Graphs and Compute Bounds on Causal Effects
causalsensSelection Bias Approach to Sensitivity Analysis for Causal Effects
causalweightEstimation Methods for Causal Inference Based on Inverse Probability Weighting
caviarpdCluster Analysis via Random Partition Distributions
cbaClustering for Business Analytics
cbanalysisCoffee Break Descriptive Analysis
cbassClassification -- Bayesian Adaptive Smoothing Splines
cbcToolsChoice-Based Conjoint Experiment Design Generation and Power Evaluation in R
cbinomContinuous Analog of a Binomial Distribution
cbioportalRBrowse and Query Clinical and Genomic Data from cBioPortal
cblCausal Discovery under a Confounder Blanket
cbqConditional Binary Quantile Models
cbsodataRStatistics Netherlands (CBS) Open Data API Client
ccRemoverRemoves the Cell-Cycle Effect from Single-Cell RNA-Sequencing Data
ccTensorCUR/CX Tensor Decomposition
ccaPP(Robust) Canonical Correlation Analysis via Projection Pursuit
cccdClass Cover Catch Digraphs
cccmCrossed Classification Credibility Model
cccpCone Constrained Convex Problems
cccrmConcordance Correlation Coefficient for Repeated (and Non-Repeated) Measures
ccdRUtilities for Interacting with the 'CCTE' APIs
ccdaCombined Cluster and Discriminant Analysis
cchsCox Model for Case-Cohort Data with Stratified Subcohort-Selection
cchsflowTransforming and Harmonizing CCHS Variables
ccidCross-Covariance Isolate Detect: a New Change-Point Method for Estimating Dynamic Functional Connectivity
cclustConvex Clustering Methods and Clustering Indexes
ccmEstimatorComparative Causal Mediation Estimation
ccmReportRWraps 'CCM' with Utility Functions
ccmlConsensus Clustering for Different Sample Coverage Data
ccmmCompositional Mediation Model
ccoptimalmatchImplementation of Case-Control Optimal Matching
ccostrEstimation of Mean Costs in Censored Data
ccpsycMethods for Cross-Cultural Psychology
ccrsCorrect and Cluster Response Style Biased Data
ccrtmCoupled Chain Radiative Transfer Models
ccssCluster Circular Systematic Sampling
cctoolsTools for the Continuous Convolution Trick in Nonparametric Estimation
cdCD Data for Entity Resolution
cdataFluid Data Transformations
cdcatRCognitive Diagnostic Computerized Adaptive Testing
cdcsisConditional Distance Correlation Based Feature Screening and Conditional Independence Inference
cderInterface to the California Data Exchange Center (CDEC)
cdfquantregQuantile Regression for Random Variables on the Unit Interval
cdgdCausal Decomposition of Group Disparities
cdlToolsTools to Download and Work with USDA Cropscape Data
cdleiCause-Deleted Life Expectancy Improvement Procedure
cdmToolsUseful Tools for Cognitive Diagnosis Modeling
cdomR Functions to Model CDOM Spectra
cdparcoordTop Frequency-Based Parallel Coordinates
cdrcRLoad 'CDRC' Data
cdsConstrained Dual Scaling for Detecting Response Styles
ceRtaintyCertainty Equivalent
ceasCellular Energetics Analysis Software
cegChain Event Graph
celestialCollection of Common Astronomical Conversion Routines and Functions
cellKeyConsistent Perturbation of Statistical Frequency- And Magnitude Tables
cellOriginsFinds RNASeq Source Tissues Using In Situ Hybridisation Data
cellVolumeDistFunctions to Fit Cell Volume Distributions and Thereby Estimate Cell Growth Rates and Division Times
cellWiseAnalyzing Data with Cellwise Outliers
cellpypesCell Type Pipes for Single-Cell RNA Sequencing Data
cellrangerTranslate Spreadsheet Cell Ranges to Rows and Columns
celltrackRMotion Trajectory Analysis
cemCoarsened Exact Matching
cemcoFit 'CemCO' Algorithm
cenGAMCensored Regression with Smooth Terms
cenROCEstimating Time-Dependent ROC Curve and AUC for Censored Data
cencrneConsistent Estimation of the Number of Communities via Regularized Network Embedding
censCovLinear Regression with a Randomly Censored Covariate
censRegCensored Regression (Tobit) Models
censableMaking Census Data More Usable
censo2017Base de Datos de Facil Acceso del Censo 2017 de Chile (2017 Chilean Census Easy Access Database)
censobrDownload Data from Brazil's Population Census
censorcopulaEstimate Parameter of Bivariate Copula
censored'parsnip' Engines for Survival Models
censusapiRetrieve Data from the Census APIs
censusrCollect Data from the Census API
centiserveFind Graph Centrality Indices
centrifugeRNon-Trivial Balance of Centrifuge Rotors
cepRBusca CEPs Brasileiros
cepiigeodistCEPII's GeoDist Datasets
ceppContext Driven Exploratory Projection Pursuit
cepreaderRead 'CEP' and Legacy 'CANOCO' Files
cepumdCalculate Consumer Expenditure Survey (CE) Annual Estimates
cequreCensored Quantile Regression & Monotonicity-Respecting Restoring
ceramicDownload Online Imagery Tiles
cerealSerialize 'vctrs' Objects to 'JSON'
cesRAccess the Canadian Election Study Datasets
ceserCluster Estimated Standard Errors
cetcolorCET Perceptually Uniform Colour Maps
ceterisParibusCeteris Paribus Profiles
cfaConfigural Frequency Analysis (CFA)
cfdaCategorical Functional Data Analysis
cfdecompCounterfactual Decomposition: MC Integration of the G-Formula
cffdrsCanadian Forest Fire Danger Rating System
cffrGenerate Citation File Format ('cff') Metadata for R Packages
cfidIdentification of Counterfactual Queries in Causal Models
cfmaCausal Functional Mediation Analysis
cfmortalityCystic Fibrosis Survival Prediction Model Based on Stanojevic Model
cforwardForward Selection using Concordance/C-Index
cfrEstimate Disease Severity and Case Ascertainment
cftClimate Futures Toolbox
cgCompare Groups, Analytically and Graphically
cgAUCCalculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it.
cgaimConstrained Groupwise Additive Index Models
cgal4h'CGAL' Version 4 C++ Header Files
cgamConstrained Generalized Additive Model
cglassoConditional Graphical LASSO for Gaussian Graphical Models with Censored and Missing Values
cglmFits Conditional Generalized Linear Models
cgmanalysisClean and Analyze Continuous Glucose Monitor Data
cgmquantifyAnalyzing Glucose and Glucose Variability
cgwtoolsMiscellaneous Tools
chAbout some Small Functions
chameleonAutomatic Colors for Multi-Dimensional Data
chandwichChandler-Bate Sandwich Loglikelihood Adjustment
changeRangeRChange Metrics for Species Geographic Ranges
changeSS-Curve Fit for Changepoint Analysis
changepointMethods for Changepoint Detection
changepoint.geoGeometrically Inspired Multivariate Changepoint Detection
changepoint.influencePackage to Calculate the Influence of the Data on a Changepoint Segmentation
changepoint.npMethods for Nonparametric Changepoint Detection
changepointTestsChange Point Tests for Joint Distributions and Copulas
changepointsA Collection of Change-Point Detection Methods
changepointsVarChange-Points Detections for Changes in Variance
changerChange R Package Name
chantricsLoglikelihood Adjustments for Econometric Models
charlatanMake Fake Data
chartqlSimplified Language for Plots and Charts
chatAI4RChat-Based Interactive Artificial Intelligence for R
chatgptInterface to 'ChatGPT' from R
chattrInteract with Large Language Models in 'RStudio'
cheaprSimple Functions to Save Time and Memory
cheatsheetDownload R Cheat Sheets Locally
checkLuhnChecks if a Number is Valid Using the Luhn Algorithm
checkargCheck the Basic Validity of a (Function) Argument
checkdownCheck-Fields and Check-Boxes for 'rmarkdown'
checkerChecks 'R' Configuration Set Up Correctly Before Class
checkglobalsStatic Analysis of R-Code Dependencies
checkhelperDeal with Check Outputs
checkmateFast and Versatile Argument Checks
checkpointInstall Packages from Snapshots on the Checkpoint Server for Reproducibility
checkthatIntuitive Unit Testing Tools for Data Manipulation
cheddarAnalysis and Visualisation of Ecological Communities
cheemInteractively Explore Local Explanations with the Radial Tour
cheeseTools for Working with Data During Statistical Analysis
chem.databasesCollection of 3 Chemical Databases from Public Sources
chem16SChemical Metrics of Community Reference Proteomes
chemCalCalibration Functions for Analytical Chemistry
chemdegAnalysis of Chemical Degradation Kinetic Data
chemodivAnalysing Chemodiversity of Phytochemical Data
chemometricsMultivariate Statistical Analysis in Chemometrics
cherryMultiple Testing Methods for Exploratory Research
cherryblossomCherry Blossom Run Race Results
chessRead, Write, Create and Explore Chess Games
chessboardCreate Network Connections Based on Chess Moves
chestChange-in-Estimate Approach to Assess Confounding Effects
chevronStandard TLGs for Clinical Trials Reporting
chiThe Chi Distribution
chicaneCapture Hi-C Analysis Engine
childdevdataChild Development Data
childesrAccessing the 'CHILDES' Database
childfreeAccess and Harmonize Childfree Demographic Data
childsdsData and Methods Around Reference Values in Pediatrics
chilemapasMapas de las Divisiones Politicas y Administrativas de Chile (Maps of the Political and Administrative Divisions of Chile)
chillRStatistical Methods for Phenology Analysis in Temperate Fruit Trees
chinese.miscMiscellaneous Tools for Chinese Text Mining and More
chipPCRToolkit of Helper Functions to Pre-Process Amplification Data
chirpsAPI Client for CHIRPS and CHIRTS
chisq.posthoc.testA Post Hoc Analysis for Pearson's Chi-Squared Test for Count Data
chisquareChi-Square and G-Square Test of Independence, Power and Residual Analysis, Measures of Categorical Association
chkCheck User-Supplied Function Arguments
chkptstanrCheckpoint MCMC Sampling with 'Stan'
chlorpromazineRConvert Antipsychotic Doses to Chlorpromazine Equivalents
chngptEstimation and Hypothesis Testing for Threshold Regression
choiceDesDesign Functions for Choice Studies
choleraAmend, Augment and Aid Analysis of John Snow's Cholera Map
choosepcChoose the Number of Principal Components via Recistruction Error
choplumpPermutation Test for Some Positive and Many Zero Responses
chopthinThe Chopthin Resampler
chordsEstimation in Respondent Driven Samples
choroplethrSimplify the Creation of Choropleth Maps in R
choroplethrAdmin1Contains an Administrative-Level-1 Map of the World
choroplethrMapsContains Maps Used by the 'choroplethr' Package
choucaA Stochastic Cellular Automaton Engine
christmasGeneration of Different Animated Christmas Cards
chromConverterChromatographic File Converter
chromerInterface to Chromosome Counts Database API
chromoMapInteractive Genomic Visualization of Biological Data
chromoteHeadless Chrome Web Browser Interface
chromseqSplit Chromosome 'Fasta' File
chronChronological Objects which Can Handle Dates and Times
chronicleGrammar for Creating R Markdown Reports
chroniclerAdd Logging to Functions
chronochrtCreating Chronological Charts
chronosphereEvolving Earth System Variables
chunkRRead Tables in Chunks
chunkedChunkwise Text-File Processing for 'dplyr'
chunkhooksChunk Hooks for 'R Markdown'
chyperFunctions for Conditional Hypergeometric Distributions
ciCalibrateCalibration of Confidence Intervals to Support Intervals
ciToolsConfidence or Prediction Intervals, Quantiles, and Probabilities for Statistical Models
ciccrCausal Inference in Case-Control and Case-Population Studies
ciceroneProvide Tours of 'Shiny' Applications
cifCointegrated ICU Forecasting
ciftiToolbox for Connectivity Informatics Technology Initiative ('CIFTI') Files
ciftiToolsTools for Reading, Writing, Viewing and Manipulating CIFTI Files
cimirInterface to the CIMIS Web API
cinaRA Computational Pipeline for Bulk 'ATAC-Seq' Profiles
cinaRgenesetsReady-to-Use Curated Gene Sets for 'cinaR'
cinterpolateInterpolation From C
cipheREncryption and Decryption with Text Ciphers
cirCentered Isotonic Regression and Dose-Response Utilities
circacompareAnalyses of Circadian Data
circleR Client Package for Circle CI
circlesplotVisualize Proportions with Circles in a Plot
circletyperCurve Text Elements in 'Shiny' Using 'CircleType.js'
circlizeCircular Visualization
circularCircular Statistics
circularEVExtreme Value Analysis for Circular Data
circumplexAnalysis and Visualization of Circular Data
citCausal Inference Test
citationSoftware Citation Tools
citationchaserPerform Forward and Backwards Chasing in Evidence Syntheses
citecorpClient for the Open Citations Corpus
citiesClinical Trials with Intercurrent Events Simulator
citmreColombian Index Tool Market Rate Exchange
citoBuilding and Training Neural Networks
citrusCustomer Intelligence Tool for Rapid Understandable Segmentation
ciuContextual Importance and Utility
ciuupi2Kabaila and Giri (2009) Confidence Interval
civCategorical Instrumental Variables
civisR Client for the 'Civis Platform API'
ciwWatch the CRAN Incoming Directories
cjarR Client for 'Customer Journey Analytics' ('CJA') API
cjbartHeterogeneous Effects Analysis of Conjoint Experiments
cjointAMCE Estimator for Conjoint Experiments
ckanrClient for the Comprehensive Knowledge Archive Network ('CKAN') API
clValidValidation of Clustering Results
cladoRcppC++ Implementations of Phylogenetic Cladogenesis Calculations
clamClassical Age-Depth Modelling of Cores from Deposits
clarabelInterior Point Conic Optimization Solver
clarifaiAccess to Clarifai API
clarifySimulation-Based Inference for Regression Models
classFunctions for Classification
classGraphConstruct Graphs of S4 Class Hierarchies
classIntChoose Univariate Class Intervals
classifierplotsGenerates a Visualization of Classifier Performance as a Grid of Diagnostic Plots
classiflyExplore Classification Models in High Dimensions
classmapVisualizing Classification Results
cld2Google's Compact Language Detector 2
cld3Google's Compact Language Detector 3
cldaConvolution-Based Linear Discriminant Analysis
cleaRClean the R Console and Environment
cleanFast and Easy Data Cleaning
cleanNLPA Tidy Data Model for Natural Language Processing
cleanTSTestbench for Univariate Time Series Cleaning
cleancallC Resource Cleanup via Exit Handlers
cleandataTo Inspect and Manipulate Data; and to Keep Track of This Process
cleanerFast and Easy Data Cleaning
cleangeoCleaning Geometries from Spatial Objects
cleanrHelps You to Code Cleaner
cleanrmdClean Class-Less 'R Markdown' HTML Documents
clesprComposite Likelihood Estimation for Spatial Data
clevrClustering and Link Prediction Evaluation in R
clhsConditioned Latin Hypercube Sampling
cliHelpers for Developing Command Line Interfaces
cliappCreate Rich Command Line Applications
clickRSemi-Automatic Preprocessing of Messy Data with Change Tracking for Dataset Cleaning
clickableImageMapImplement 'tableGrob' Object as a Clickable Image Map
clickbWeb Data Analysis by Bayesian Mixture of Markov Models
clickstreamAnalyzes Clickstreams Based on Markov Chains
clidamongerMonthly Climate Data for Germany, Usable for Heating and Cooling Calculations
clidatajpData from Japan Meteorological Agency
cliffExecute Command Line Programs Interactively
cliffordArbitrary Dimensional Clifford Algebras
clifroEasily Download and Visualise Climate Data from CliFlo
clikcorrCensoring Data and Likelihood-Based Correlation Estimation
climaemetClimate AEMET Tools
climateStabilityEstimating Climate Stability from Climate Model Data
climatolClimate Tools (Series Homogenization and Derived Products)
climatrendsClimate Variability Indices for Ecological Modelling
climeConstrained L1-Minimization for Inverse (Covariance) Matrix Estimation
climenvDownload, Extract and Visualise Climate and Elevation Data
climetricsClimate Change Metrics
climextRemesTools for Analyzing Climate Extremes
climwinClimate Window Analysis
clinDRSimulation and Analysis Tools for Clinical Dose Response Modeling
clinDataReviewClinical Data Review Tool
clinPKClinical Pharmacokinetics Toolkit
clinUtilsGeneral Utility Functions for Analysis of Clinical Data
clinfunClinical Trial Design and Data Analysis Functions
clinicalsignificanceA Toolbox for Clinical Significance Analyses in Intervention Studies
clinmonHemodynamic Calculations from Clinical Monitoring
clinsigClinical Significance Functions
clinspacyClinical Natural Language Processing using 'spaCy', 'scispaCy', and 'medspaCy'
clintoolsTools for Clinical Research
cliotClinical Indices and Outcomes Tools
clippCalculating Likelihoods by Pedigree Paring
cliprRead and Write from the System Clipboard
clisymbolsUnicode Symbols at the R Prompt
clmplusTool-Box of Chain Ladder Plus Models
clockDate-Time Types and Tools
clockifyA Wrapper for the 'Clockify' API
clogitL1Fitting Exact Conditional Logistic Regression with Lasso and Elastic Net Penalties
clogitLassoSparse Conditional Logistic Regression for Matched Studies
clogitboostBoosting Conditional Logit Model
cloneRateEstimate Growth Rates from Phylogenetic Trees
clordrComposite Likelihood Inference and Diagnostics for Replicated Spatial Ordinal Data
cloudUtilCloud Utilization Plots
cloudfsStreamlined Interface to Interact with Cloud Storage Platforms
cloudmlInterface to the Google Cloud Machine Learning Platform
cloudosR Client Library for CloudOS
cloudstoRSimplifies Access to Cloudstor API
clptheoryCompute Price of Production and Labor Values
clrCurve Linear Regression via Dimension Reduction
clttoolsCentral Limit Theorem Experiments (Theoretical and Simulation)
clubSandwichCluster-Robust (Sandwich) Variance Estimators with Small-Sample Corrections
clubproClassification Using Binary Procrustes Rotation
clueCluster Ensembles
clugenrMultidimensional Cluster Generation Using Support Lines
clusEvolA Procedure for Cluster Evolution Analytics
clusTransitionMonitor Changes in Cluster Solutions of Dynamic Datasets
cluscovClustered Covariate Regression
clusrankWilcoxon Rank Tests for Clustered Data
clust.bin.pairStatistical Methods for Analyzing Clustered Matched Pair Data
clustAnalyticsCluster Evaluation on Graphs
clustEffClusters of Effects Curves in Quantile Regression Models
clustMDModel Based Clustering for Mixed Data
clustMixTypek-Prototypes Clustering for Mixed Variable-Type Data
clustNetNetwork-Based Clustering
cluster"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
cluster.datasetsCluster Analysis Data Sets
clusterConsConsensus Clustering using Multiple Algorithms and Parameters
clusterCritClustering Indices
clusterGenerationRandom Cluster Generation (with Specified Degree of Separation)
clusterHDTools for Clustering High-Dimensional Data
clusterMICluster Analysis with Missing Values by Multiple Imputation
clusterReproReproducibility of Gene Expression Clusters
clusterSEsCalculate Cluster-Robust p-Values and Confidence Intervals
clusterSimSearching for Optimal Clustering Procedure for a Data Set
clusterabilityPerforms Tests for Cluster Tendency of a Data Set
clusteredinterferenceCausal Effects from Observational Studies with Clustered Interference
clusterhapClustering Genotypes in Haplotypes
clustering.sc.dpOptimal Distance-Based Clustering for Multidimensional Data with Sequential Constraint
clustermoleUnbiased Single-Cell Transcriptomic Data Cell Type Identification
clustermqEvaluate Function Calls on HPC Schedulers (LSF, SGE, SLURM, PBS/Torque)
clusternomicsIntegrative Clustering for Heterogeneous Biomedical Datasets
clustertendCheck the Clustering Tendency
clustlearnLearn Clustering Techniques Through Examples and Code
clustraClustering Longitudinal Trajectories
clustrdMethods for Joint Dimension Reduction and Clustering
clustreeVisualise Clusterings at Different Resolutions
clustringrCluster Strings by Edit-Distance
clustvarselVariable Selection for Gaussian Model-Based Clustering
clvCluster Validation Techniques
cmRAnalysis of Cardiac Magnetic Resonance Images
cmaRsImplementation of the Conic Multivariate Adaptive Regression Splines in R
cmaesCovariance Matrix Adapting Evolutionary Strategy
cmaesrCovariance Matrix Adaptation Evolution Strategy
cmahalanobisCalculate Distance Measures for a Given List of Data Frames with Factors
cmbClustConditional Mixture Modeling and Model-Based Clustering
cmcRAn Implementation of the 'Congruent Matching Cells' Method
cmceComputer Model Calibration for Deterministic and Stochastic Simulators
cmdfunFramework for Building Interfaces to Shell Commands
cmenetBi-Level Selection of Conditional Main Effects
cmfrecCollective Matrix Factorization for Recommender Systems
cmhcAccess, Retrieve, and Work with CMHC Data
cmlConditional Manifold Learning
cmmCategorical Marginal Models
cmmrCEU Mass Mediator RESTful API
cmnaComputational Methods for Numerical Analysis
cmoceanBeautiful Colour Maps for Oceanography
cmprskSubdistribution Analysis of Competing Risks
cmprskQRAnalysis of Competing Risks Using Quantile Regressions
cmprskcoxmsmUse IPW to Estimate Treatment Effect under Competing Risks
cmpsRR Implementation of Congruent Matching Profile Segments Method
cmrutilsMisc Functions of the Center for Mathematical Research
cmsCalculate Medicare Reimbursement
cmsafA Toolbox for CM SAF NetCDF Data
cmsafopsTools for CM SAF NetCDF Data
cmsafvisTools to Visualize CM SAF NetCDF Data
cmstatrStatistical Methods for Composite Material Data
cmstatrExtMore Statistical Methods for Composite Material Data
cmtestConditional Moments Test
cmvnormThe Complex Multivariate Gaussian Distribution
cnaCausal Modeling with Coincidence Analysis
cnaOptOptimizing Consistency and Coverage in Configurational Causal Modeling
cnbdistrConditional Negative Binomial Distribution
cncaGUICanonical Non-Symmetrical Correspondence Analysis in R
cnmapChina Map Data from AutoNavi Map
cnumChinese Numerals Processing
coRankingCo-Ranking Matrix
coalaA Framework for Coalescent Simulation
coalescentMCMCMCMC Algorithms for the Coalescent
coarseDataToolsAnalysis of Coarsely Observed Data
coatConditional Method Agreement Trees (COAT)
cobaltCovariate Balance Tables and Plots
cobiclustBiclustering via Latent Block Model Adapted to Overdispersed Count Data
cobsConstrained B-Splines (Sparse Matrix Based)
cocaCluster-of-Clusters Analysis
cocktailApp'shiny' App to Discover Cocktails
coconotsConvolution-Closed Models for Count Time Series
cocorComparing Correlations
cocorrespCo-Correspondence Analysis Methods
cocosoRCoCoSo - Combined Compromise Solution Method for MCDA
cocotestDependence Condition Test Using Ranked Correlation Coefficients
cocronStatistical Comparisons of Two or more Alpha Coefficients
codaOutput Analysis and Diagnostics for MCMC
coda.baseA Basic Set of Functions for Compositional Data Analysis
coda4microbiomeCompositional Data Analysis for Microbiome Studies
codacoreLearning Sparse Log-Ratios for Compositional Data
codalmTransformation-Free Linear Regression for Compositional Outcomes and Predictors
codaredistlmCompositional Data Linear Models with Composition Redistribution
codeCollectionCollection of Codes with Labels
codebookAutomatic Codebooks from Metadata Encoded in Dataset Attributes
codebookrCreate Codebooks from Data Frames
codebreakerRetro Logic Game
codecountRCounting Codes in a Text and Preparing Data for Analysis
codemetaA Smaller 'codemetar' Package
codemetarGenerate 'CodeMeta' Metadata for R Packages
codenameGeneration of Code Names for Organizations, People, Projects, and Whatever Else
codepMultiscale Codependence Analysis
coderDeterministic Categorization of Items Based on External Code Data
codetoolsCode Analysis Tools for R
codexcopdThe CODEX (Comorbidity, Obstruction, Dyspnea, and Previous Severe Exacerbations) Index: Short and Medium-Term Prognosis in Patients Hospitalized for Chronic Obstructive Pulmonary Disease (COPD) Exacerbations
codezSeq2Seq Encoder-Decoder Model for Time-Feature Analysis Based on Tensorflow
codifiedProduce Standard/Formalized Demographics Tables
codingMatricesAlternative Factor Coding Matrices for Linear Model Formulae
codynCommunity Dynamics Metrics
coefaMeta Analysis of Factor Analysis Based on CO-Occurrence Matrices
coefficientalphaRobust Coefficient Alpha and Omega with Missing and Non-Normal Data
coefplotPlots Coefficients from Fitted Models
coenoclinerCoenocline Simulation
coenoflexGradient-Based Coenospace Vegetation Simulator
cofadContrast Analyses for Factorial Designs
cofeatureRGenerate Cofeature Matrices
coffeeChronological Ordering for Fossils and Environmental Events
cogaConvolution of Gamma Distributions
coglassoCollaborative Graphical Lasso - Multi-Omics Network Reconstruction
cogmaprCognitive Mapping Tools Based on Coding of Textual Sources
cognitoRAuthentication for 'Shiny' Apps with 'Amazon Cognito'
cohortBuilderData Source Agnostic Filtering Tools
cohortsCohort Analysis Made Easy
cohorttoolsCohort Data Analyses
coilContextualization and Evaluation of COI-5P Barcode Data
coinConditional Inference Procedures in a Permutation Test Framework
coinmarketcaprGet 'Cryptocurrencies' Market Cap Prices from Coin Market Cap
cointRegParameter Estimation and Inference in a Cointegrating Regression
cointmonitoRConsistent Monitoring of Stationarity and Cointegrating Relationships
coldCount Longitudinal Data
colfConstrained Optimization on Linear Function
collUtilsAuxiliary Package for Package 'CollapsABEL'
collapseAdvanced and Fast Data Transformation
collapsibleTreeInteractive Collapsible Tree Diagrams using 'D3.js'
collateralQuickly Evaluate Captured Side Effects
collatzFunctions Related to the Collatz/Syracuse/3n+1 Problem
collectionsHigh Performance Container Data Types
collidrCheck for Namespace Collisions Across Packages and Functions on CRAN
collinVisualization the Effects of Collinearity in Distributed Lag Models and Other Linear Models
collinearSeamless Multicollinearity Management
collpcmCollapsed Latent Position Cluster Model for Social Networks
colmozzieDengue Cases and Climate Variables in Colombo Sri Lanka
colocColocalisation Tests of Two Genetic Traits
colocalizationNormalized Spatial Intensity Correlation
colocalizedClusters of Colocalized Sequences
colocrConduct Co-Localization Analysis of Fluorescence Microscopy Images
colorBlindnessSafe Color Set for Color Blindness
colorDFColorful Data Frames in R Terminal
colorRamp2Generate Color Mapping Functions
colorRampsBuilds Color Tables
colorSpecColor Calculations with Emphasis on Spectral Data
colorblindcheckCheck Color Palettes for Problems with Color Vision Deficiency
colordistanceDistance Metrics for Image Color Similarity
colorednoiseSimulate Temporally Autocorrelated Populations
colorfindrExtract Colors from Windows BMP, JPEG, PNG, TIFF, and SVG Format Images
colorhcplotColorful Hierarchical Clustering Dendrograms
coloristColoring Wildlife Distributions in Space-Time
colorizerColorize Old Images Using the 'DeOldify' Image Colorization API
colormapColor Palettes using Colormaps Node Module
colorpatchOptimized Rendering of Fold Changes and Confidence Values
colorplaneBasic S4 Classes and Methods for Mapping Between Numeric Values and Colors
colorrColor Palettes for EPL, MLB, NBA, NHL, and NFL Teams
colors3dGenerate 2D and 3D Color Palettes
colorsGenGeneration of Random Colors
colorscienceColor Science Methods and Data
colorspaceA Toolbox for Manipulating and Assessing Colors and Palettes
colouRCreate Colour Palettes from Images
colourloversR Client for the COLOURlovers API
colourpickerA Colour Picker Tool for Shiny and for Selecting Colours in Plots
colourvaluesAssigns Colours to Values
colourvisionColour Vision Models
colsConstrained Ordinary Least Squares
cols4allColors for all
coltCommand-Line Color Themes
comFuncsCommonly Used Functions for R Shiny Applications
comatCreates Co-Occurrence Matrices of Spatial Data
comatoAnalysis of Concept Maps and Concept Landscapes
combat.enigmaFit and Apply ComBat Harmonization for ENIGMA
combinITA Combined Interaction Test for Unreplicated Two-Way Tables
combinatcombinatorics utilities
combinationpvaluesCombination of Independent P-Values
combinatoricsIntroduction to Some Combinatorial Relations
combinedeventsCalculate Scores and Marks for Track and Field Combined Events
combirocSelection and Ranking of Omics Biomarkers Combinations Made Easy
combiterCombinatorics Iterators
comclimCommunity Climate Statistics
cometExactTestExact Test from the Combinations of Mutually Exclusive Alterations (CoMEt) Algorithm
cometr'Comet' API for R
cometsCovariance Measure Tests for Conditional Independence
comfModels and Equations for Human Comfort Research
commafreeCall Functions Without Commas Between Arguments
commonSolutions for Common Problems in Base R
commonmarkHigh Performance CommonMark and Github Markdown Rendering in R
commonsMathJAR Files of the Apache Commons Mathematics Library
communicationFeature Extraction and Model Estimation for Audio of Human Speech
comorbidPGSAssessing Predisposition Between Phenotypes using Polygenic Scores
comorbidityComputing Comorbidity Scores
comorosmapsComoro Islands Maps
compHclustComplementary Hierarchical Clustering
comparatorComparison Functions for Clustering and Record Linkage
compareComparing Objects for Differences
compareCCompare Two Correlated C Indices with Right-Censored Survival Outcome
compareDFDo a Git Style Diff of the Rows Between Two Dataframes with Similar Structure
compareGroupsDescriptive Analysis by Groups
compareMCMCsCompare MCMC Efficiency from 'nimble' and/or Other MCMC Engines
comparerCompare Output and Run Time
comparisonMultivariate Likelihood Ratio Calculation and Evaluation
compasConformational Manipulations of Protein Atomic Structures
comperankRanking Methods for Competition Results
comperesManage Competition Results
competitiontoolboxA Graphical User Interface for Antitrust and Trade Practitioners
compindPCAComputation of Relative Weights of Variables and Composite Index Values Based on PCA
compindexRCalculates Composite Index
completejourneyRetail Shopping Data
complexTime Series Analysis and Forecasting Using Complex Variables
complexNetComplex Network Generation
complexityCalculate the Proportion of Permutations in Line with an Informative Hypothesis
complexlmLinear Fitting for Complex Valued Data
complexplusFunctions of Complex or Real Variable
complmrobRobust Linear Regression with Compositional Data as Covariates
compositionsCompositional Data Analysis
compound.CoxUnivariate Feature Selection and Compound Covariate for Predicting Survival
comprehenrList Comprehensions
compute.esCompute Effect Sizes
comsimitvFlexible Framework for Simulating Community Assembly
comstabPartitioning the Drivers of Stability of Ecological Communities
comtradr-- Title is missing --
con2aqiCalculate the AQI from Pollutant Concentration
con2lkiCalculate the Dutch Air Quality Index (LKI)
conStructModels Spatially Continuous and Discrete Population Genetic Structure
conText'a la Carte' on Text (ConText) Embedding Regression
conTreeContrast Trees and Boosting
concatenateHuman-Friendly Text from Unknown Strings
concatipedeEasy Concatenation of Fasta Sequences
concavemanA Very Fast 2D Concave Hull Algorithm
conclustPairwise Constraints Clustering
concomConnected Components of an Undirected Graph
concorRCONCOR and Supplemental Functions
concordanceProduct Concordance
concstatsMarket Structure, Concentration and Inequality Measures
condApproximate Conditional Inference for Logistic and Loglinear Models
condGEEParameter Estimation in Conditional GEE for Recurrent Event Gap Times
condMVNormConditional Multivariate Normal Distribution
condSURVEstimation of the Conditional Survival Function for Ordered Multivariate Failure Time Data
condTruncMVNConditional Truncated Multivariate Normal Distribution
condensrAcademic Group Website Generator
condformatConditional Formatting in Data Frames
condirComputation of P Values and Bayes Factors for Conditioning Data
conditionzControl How Many Times Conditions are Thrown
condorInteract with 'Condor' from R via SSH
condorOptionsTrading Condor Options Strategies
conductorCreate Tours in 'Shiny' Apps Using 'Shepherd.js'
conduscoQuery-Driven Pipeline Execution and Query Templates
condvisConditional Visualization for Statistical Models
condvis2Interactive Conditional Visualization for Supervised and Unsupervised Models in Shiny
coneprojPrimal or Dual Cone Projections with Routines for Constrained Regression
confVisualization and Analysis of Statistical Measures of Confidence
conf.designConstruction of factorial designs
confSAMEstimates and Bounds for the False Discovery Proportion, by Permutation
confconsConfidence and Consistency of Predictive Distribution Models
confidenceConfidence Estimation of Environmental State Classifications
configManage Environment Specific Configuration Values
configrAn Implementation of Parsing and Writing Configuration File (JSON/INI/YAML/TOML)
configuralMultivariate Profile Analysis
confintROBBootstrap Confidence Intervals for Robust and Classical Linear Mixed Model Estimators
confinterpretDescriptive Interpretations of Confidence Intervals
confintrConfidence Intervals
conflictedAn Alternative Conflict Resolution Strategy
conflrClient for 'Confluence' API
conformalClassificationTransductive and Inductive Conformal Predictions for Classification Problems
conformalInference.fdTools for Conformal Inference for Regression in Multivariate Functional Setting
conformalInference.multiConformal Inference Tools for Regression with Multivariate Response
conformalbayesJackknife(+) Predictive Intervals for Bayesian Models
conformalpvalueComputes Conformal p-Values
confreqConfigural Frequencies Analysis Using Log-Linear Modeling
congressAccess the Congress.gov API
conicfitAlgorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov
conjointAn Implementation of Conjoint Analysis Method
conjurerA Parametric Method for Generating Synthetic Data
conleyregEstimations using Conley Standard Errors
conmetConstruct Measurement Evaluation Tool
connectapiUtilities for Interacting with the 'Posit Connect' Server API
connectionsIntegrates with the 'RStudio' Connections Pane and 'pins'
connectoModaDownload Data from Moda
connectwidgetsOrganize and Curate Your Content Within 'Posit Connect'
conogiveCongeneric Normal-Ogive Model
conosClustering on Network of Samples
conover.testConover-Iman Test of Multiple Comparisons Using Rank Sums
conquerConvolution-Type Smoothed Quantile Regression
conquestrAn R Package to Extend 'ACER ConQuest'
conradClient for the Microsoft's 'Cognitive Services Text to Speech REST' API
conserveRIdentifying Conservation Prioritization Methods Based on Data Availability
consolechoiceAn Easy and Quick Way to Loop a Character Vector as a Menu in the Console
consortCreate Consort Diagram
consortrInteractive Consort Flow Diagrams
constantsReference on Constants, Units and Uncertainty
constellationIdentify Event Sequences Using Time Series Joins
constrainedKrigingConstrained, Covariance-Matching Constrained and Universal Point or Block Kriging
constructiveDisplay Idiomatic Code to Construct Most R Objects
contFracRContinued Fraction Generators and Evaluators
contTimeCausalContinuous Time Causal Models
contactdataSocial Contact Matrices for 177 Countries
containerExtending Base 'R' Lists
contentidAn Interface for Content-Based Identifiers
contfracContinued Fractions
contingencyDiscrete Multivariate Probability Distributions
contingencytablesStatistical Analysis of Contingency Tables
contourPlotPlots x,y,z Co-Ordinates in a Contour Map
contoureRContouring of Non-Regular Three-Dimensional Data
contrastA Collection of Contrast Methods
contributionA Tiny Contribution Table Generator Based on 'ggplot2'
controlA Control Systems Toolbox
controlTestQuantile Comparison for Two-Sample Right-Censored Survival Data
controlfunctionIVControl Function Methods with Possibly Invalid Instrumental Variables
contsurvplotVisualize the Effect of a Continuous Variable on a Time-to-Event Outcome
convdistrConvolute Probabilistic Distributions
convergEUMonitoring Convergence of EU Countries
convertbondsUse the Given Parameters to Calculate the European Option Value
convertidConvert Gene IDs Between Each Other and Fetch Annotations from Biomart
convertrConvert Between Units
convevolAnalysis of Convergent Evolution
conveyIncome Concentration Analysis with Complex Survey Samples
convoSPATConvolution-Based Nonstationary Spatial Modeling
cooccurProbabilistic Species Co-Occurrence Analysis in R
cookiecutterGenerate Project Files from a Template
cookiemonsterYour Friendly Solution to Managing Browser Cookies
cookiesUse Browser Cookies with 'shiny'
coopCo-Operation: Fast Covariance, Correlation, and Cosine Similarity Operations
copBasicGeneral Bivariate Copula Theory and Many Utility Functions
copCARFitting the copCAR Regression Model for Discrete Areal Data
copcorCorrelates of Protection and Correlates of Risk Functions
copeCoverage Probability Excursion (CoPE) Sets
copentEstimating Copula Entropy and Transfer Entropy
cophescanAdaptation of the Coloc Method for PheWAS
coppeCosenzaRCOPPE-Cosenza Fuzzy Hierarchy Model
copreTools for Nonparametric Martingale Posterior Sampling
copsCluster Optimized Proximity Scaling
copulaMultivariate Dependence with Copulas
copulaDataData Sets for Copula Modeling
copulaSimVirtual Patient Simulation by Copula Invariance Property
copulaboostFitting Additive Copula Regression Models for Binary Outcome Regression
copulaedasEstimation of Distribution Algorithms Based on Copulas
copularegCopula Regression
copyseparatorAssembling Long Gene Copies from Short Read Data
corHMMHidden Markov Models of Character Evolution
corTESTsrdSignificance Testing of Rank Cross-Correlations under SRD
corTestRobust Tests for Equal Correlation
coraCora Data for Entity Resolution
corazonApply 'colorffy' Color Gradients Within 'shiny' Elements
corclassCorrelational Class Analysis
cordCommunity Estimation in G-Models via CORD
cordilleraCalculation of the OPTICS Cordillera
coreCTProgrammatic Analysis of Sediment Cores Using Computed Tomography Imaging
coreCollectionCore Collection
coreNLPWrappers Around Stanford CoreNLP Tools
coreSimCore Functionality for Simulating Quantities of Interest from Generalised Linear Models
corehunterMulti-Purpose Core Subset Selection
corelsR Binding for the 'Certifiably Optimal RulE ListS (Corels)' Learner
corkscrewPreprocessor for Data Modeling
corncobCount Regression for Correlated Observations with the Beta-Binomial
cornetElastic Net with Dichotomised Outcomes
coro'Coroutines' for R
coroICAConfounding Robust Independent Component Analysis for Noisy and Grouped Data
coronaCoronavirus ('Rona') Data Exploration
coronavirusThe 2019 Novel Coronavirus COVID-19 (2019-nCoV) Dataset
corpcorEfficient Estimation of Covariance and (Partial) Correlation
corporaStatistics and Data Sets for Corpus Frequency Data
corporaexplorerA 'Shiny' App for Exploration of Text Collections
corpustoolsManaging, Querying and Analyzing Tokenized Text
corr2DImplementation of 2D Correlation Analysis in R
corrDNAFinding Associations in Position-Wise Aligned DNA Sequence Dataset
corrVizVisualise Correlations
corrarrayCorrelation Arrays and 2-Sample Correlation Matrices
corrcoverageCorrecting the Coverage of Credible Sets from Bayesian Genetic Fine Mapping
correctRCorrected Test Statistics for Comparing Machine Learning Models on Correlated Samples
correctedAUCCorrecting AUC for Measurement Error
correlationMethods for Correlation Analysis
correlationfunnelSpeed Up Exploratory Data Analysis (EDA) with the Correlation Funnel
correlbinomCorrelated Binomial Probabilities
correspondenceTablesCreating Correspondence Tables Between Two Statistical Classifications
corrfunsCorrelation Coefficient Related Functions
corrgramPlot a Correlogram
corrgrapherExplore Correlations Between Variables in a Machine Learning Model
corrmetaCorrelated Meta-Analysis
corrplotVisualization of a Correlation Matrix
corrrCorrelations in R
corrsieveSoftware for Summarising and Evaluating STRUCTURE Output
corrtableCreates and Saves Out a Correlation Table with Significance Levels Indicated
corsetArbitrary Bounding of Series and Time Series Objects
cortoInference of Gene Regulatory Networks
corxCreate and Format Correlation Matrices
cosaBound Constrained Optimal Sample Size Allocation
cosinorTools for Estimating and Predicting the Cosinor Model
cosinor2Extended Tools for Cosinor Analysis of Rhythms
cosmicsigMutational Signatures from COSMIC (Catalogue of Somatic Mutations in Cancer)
cosmoFnsFunctions for Cosmological Distances, Times, Luminosities, Etc
cossoFit Regularized Nonparametric Regression Models Using COSSO Penalty
costatTime Series Costationarity Determination
costsensitiveCost-Sensitive Multi-Class Classification
cotramCount Transformation Models
cotrendConsistent Co-Trending Rank Selection
countDMEstimation of Count Data Models
countHMMPenalized Estimation of Flexible Hidden Markov Models for Time Series of Counts
countSTARFlexible Modeling of Count Data
countToFPKMConvert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
countTransformersTransform Counts in RNA-Seq Data Analysis
countcolorsLocates and Counts Pixels Within Color Range(s) in Images
countdataThe Beta-Binomial Test for Count Data
countdownA Countdown Timer for HTML Presentations, Documents, and Web Apps
counterfactualsCounterfactual Explanations
countfitteRComprehensive Automatized Evaluation of Distribution Models for Count Data
countgmifsDiscrete Response Regression for High-Dimensional Data
countlandAnalysis of Biological Count Data, Especially from Single-Cell RNA-Seq
countpropCalculate Model-Based Metrics of Proportionality on Count-Based Compositional Data
countriesDeal with Country Data in an Easy Way
countrycodeConvert Country Names and Country Codes
countsplitSplitting a Count Matrix into Independent Folds
counttsThomson Sampling for Zero-Inflated Count Outcomes
covBMBrownian Motion Processes for 'nlme'-Models
covKCDCovariance Estimation for Matrix Data with the Kronecker-Core Decomposition
covRobustRobust Covariance Estimation via Nearest Neighbor Cleaning
covTestRCovariance Matrix Tests
covadapImplement Covariate-Adaptive Randomization
covafillrLocal Polynomial Regression of State Dependent Covariates in State-Space Models
covatestTests on Properties of Space-Time Covariance Functions
covdepGECovariate Dependent Graph Estimation
coveR2Process Digital Cover Photography Images of Tree Crowns
coveffectsplotProduce Forest Plots to Visualize Covariate Effects
covequalTest for Equality of Covariance Matrices
covfefeCovfefy Any Word, Sentence or Speech
covglassoSparse Covariance Matrix Estimation
covid19.analyticsLoad and Analyze Live Data from the COVID-19 Pandemic
covid19brBrazilian COVID-19 Pandemic Data
covid19brazilCOVID-19 Dataset for Brazil
covid19dbcandSelected 'Drugbank' Drugs for COVID-19 Treatment Related Data in R Format
covid19franceCases of COVID-19 in France
covid19indiaPulling Clean Data from Covid19india.org
covid19italyThe 2019 Novel Coronavirus COVID-19 (2019-nCoV) Italy Dataset
covid19sfThe Covid19 San Francisco Dataset
covid19srilankaThe 2019 Novel Coronavirus COVID-19 (2019-nCoV) Data in Sri Lanka
covid19swissCOVID-19 Cases in Switzerland and Principality of Liechtenstein
covid19tunisiaCases of COVID-19 in Tunisia
covid19usCases of COVID-19 in the United States
covidcastClient for Delphi's 'COVIDcast Epidata' API
covidmxDescarga y analiza datos de COVID-19 en México
covidnorPublic COVID-19 Data for Norway
covidprobabilityEstimate the Unit-Wide Probability of COVID-19
covidsymptomCOVID Symptom Study Sweden Open Dataset
covrTest Coverage for Packages
covsepTests for Determining if the Covariance Structure of 2-Dimensional Data is Separable
covsimVITA, IG and PLSIM Simulation for Given Covariance and Marginals
cowbellPerforms Segmented Linear Regression on Two Independent Variables
cowplotStreamlined Plot Theme and Plot Annotations for 'ggplot2'
cowsayMessages, Warnings, Strings with Ascii Animals
coxedDuration-Based Quantities of Interest for the Cox Proportional Hazards Model
coxerrCox Regression with Dependent Error in Covariates
coxmeMixed Effects Cox Models
coxphSGDStochastic Gradient Descent log-Likelihood Estimation in Cox Proportional Hazards Model
coxphfCox Regression with Firth's Penalized Likelihood
coxphwWeighted Estimation in Cox Regression
coxrobustFit Robustly Proportional Hazards Regression Model
coxrtCox Proportional Hazards Regression for Right-Truncated Data
coxseiFitting a CoxSEI Model
cp4pCalibration Plot for Proteomics
cpaConfirmatory Path Analysis Through 'd-sep' Tests
cpdComplex Pearson Distributions
cpfaClassification with Parallel Factor Analysis
cpiConditional Predictive Impact
cplmCompound Poisson Linear Models
cplotsPlots for Circular Data
cpmSequential and Batch Change Detection Using Parametric and Nonparametric Methods
cpmBigDataFitting Semiparametric Cumulative Probability Models for Big Data
cpmrConnectome Predictive Modelling in R
cpopDetection of Multiple Changes in Slope in Univariate Time-Series
cpp11A C++11 Interface for R's C Interface
cpp11armadilloAn 'Armadillo' Interface
cppRoutingAlgorithms for Routing and Solving the Traffic Assignment Problem
cppcheckRCheck 'C' and 'C++' Files using 'Cppcheck'
cppdoublesFast Relative Comparisons of Floating Point Numbers in 'C++'
cprControl Polygon Reduction
cprobitConditional Probit Model for Analysing Continuous Outcomes
cprrFunctions for Working with Danish CPR Numbers
cpsRLoad CPS Microdata into R Using the 'Census Bureau Data' API
cpssChange-Point Detection by Sample-Splitting Methods
cpsurvsimSimulating Survival Data from Change-Point Hazard Distributions
cpsvoteA Toolbox for Using the CPS’s Voting and Registration Supplement
cptClassification Permutation Test
cptcity'cpt-city' Colour Gradients
cqrRegQuantile, Composite Quantile Regression and Regularized Versions
cquadConditional Maximum Likelihood for Quadratic Exponential Models for Binary Panel Data
craggTests for Weak Instruments in R
cramerMultivariate Nonparametric Cramer-Test for the Two-Sample-Problem
crandepNetwork Analysis of Dependencies of CRAN Packages
crankCompleting Ranks
cranlikeTools for 'CRAN'-Like Repositories
cranlogsDownload Logs from the 'RStudio' 'CRAN' Mirror
cranlyPackage Directives and Collaboration Networks in CRAN
crassmatConditional Random Sampling Sparse Matrices
crawlFit Continuous-Time Correlated Random Walk Models to Animal Movement Data
crayonColored Terminal Output
crayonsColor Palettes from Crayon Boxes
crc32cCyclic Redundancy Check with CPU-Specific Acceleration
crchCensored Regression with Conditional Heteroscedasticity
crctStepdownUnivariate Analysis of Cluster Trials with Multiple Outcomes
createLogicalPCMCreate Logical Pairwise Comparison Matrix for the Analytic Hierarchy Process
credentialsTools for Managing SSH and Git Credentials
creditmodelToolkit for Credit Modeling, Analysis and Visualization
credsubsCredible Subsets
creduleCredit Default Swap Functions
creggSimple Conjoint Tidying, Analysis, and Visualization
crewA Distributed Worker Launcher Framework
crew.aws.batchA Crew Launcher Plugin for AWS Batch
crew.clusterCrew Launcher Plugins for Traditional High-Performance Computing Clusters
crfsuiteConditional Random Fields for Labelling Sequential Data in Natural Language Processing
cricketdataInternational Cricket Data
cricketrAnalyze Cricketers and Cricket Teams Based on ESPN Cricinfo Statsguru
crimCVGroup-Based Modelling of Longitudinal Data
crimedataAccess Crime Data from the Open Crime Database
crimeutilsA Comprehensive Set of Functions to Clean, Analyze, and Present Crime Data
crispFits a Model that Partitions the Covariate Space into Blocks in a Data- Adaptive Way
crispRdesignRGuide Sequence Design for CRISPR/Cas9
criticalityModeling Fissile Material Operations in Nuclear Facilities
criticalpathAn Implementation of the Critical Path Method
critpathSetting the Critical Path in Project Management
crm12CombPhase I/II CRM Based Drug Combination Design
crmPackObject-Oriented Implementation of CRM Designs
crmRegCellwise Robust M-Regression and SPADIMO
crmnCCMN and Other Normalization Methods for Metabolomics Data
crochetImplementation Helper for '[' and '[<-' of Custom Matrix-Like Types
cromwellDashboardA Dashboard to Visualize Scientific Workflows in 'Cromwell'
cronRSchedule R Scripts and Processes with the 'cron' Job Scheduler
croneStructural Crystallography in 1d
cronologiaCreate an HTML Vertical Timeline from a Data Frame in 'rmarkdown' and 'shiny'
cropGraphics Cropping Tool
cropDemandSpatial Crop Water Demand for Brazil
cropZoningClimate Crop Zoning Based in Air Temperature for Brazil
cropcirclesCrops an Image to a Circle
cropdatapeOpen Data of Agricultural Production of Crops of Peru
cropgrowdaysCrop Growing Degree Days and Agrometeorological Calculations
cropsChangepoints for a Range of Penalties (CROPS)
crossdesConstruction of Crossover Designs
crosshapLocal Haplotype Clustering and Visualization
crossmapApply Functions to All Combinations of List Elements
crossnmaCross-Design & Cross-Format Network Meta-Analysis and Regression
crossrunJoint Distribution of Number of Crossings and Longest Run
crosstableCrosstables for Descriptive Analyses
crosstalkInter-Widget Interactivity for HTML Widgets
crossurrCross-Fitting for Doubly Robust Evaluation of High-Dimensional Surrogate Markers
crossvalGeneric Functions for Cross Validation
crossvalidationCPCross-Validation for Change-Point Regression
crosswalkrRename and Encode Data Frames Using External Crosswalk Files
crossword.rGenerating Crosswords from Word Lists
crovConstrained Regression Model for an Ordinal Response and Ordinal Predictors
crplyrA 'dplyr' Interface for Crunch
crqaUnidimensional and Multidimensional Methods for Recurrence Quantification Analysis
crrSCCompeting Risks Regression for Stratified and Clustered Data
crrcbcvBias-Corrected Variance for Competing Risks Regression with Clustered Data
crrstepStepwise Covariate Selection for the Fine & Gray Competing Risks Regression Model
crsCategorical Regression Splines
crseEventStudyA Robust and Powerful Test of Abnormal Stock Returns in Long-Horizon Event Studies
crsmetaExtract Coordinate System Metadata
crsnlsNonlinear Regression Parameters Estimation by 'CRS4HC' and 'CRS4HCe'
crsoCancer Rule Set Optimization ('crso')
crsraTidying and Analyzing 'Coursera' Research Export Data
crsuggestObtain Suggested Coordinate Reference System Information for Spatial Data
crulHTTP Client
crunchCrunch.io Data Tools
crunchyShiny Apps on Crunch
crutsInterface to Climatic Research Unit Time-Series Version 3.21 Data
crwbmetaregCluster Robust Wild Bootstrap Meta Regression
cryStatistics for Structural Crystallography
crypto2Download Crypto Currency Data from 'CoinMarketCap' without 'API'
cryptoQuotesA Streamlined Access to Cryptocurrency OHLC-V Market Data and Sentiment Indicators
cryptographyEncrypts and Decrypts Text Ciphers
cryptorngAccess System Cryptographic Pseudorandom Number Generators
cryptoverseVisualization and Analytics for the Cryptoverse
cryptowatchRAn API Wrapper for 'Cryptowatch'
crystCalculate the Relative Crystallinity of Starch by XRD and FTIR
csaA Cross-Scale Analysis Tool for Model-Observation Visualization and Integration
csalertAlerts from Public Health Surveillance Data
csamplingFunctions for Conditional Simulation in Regression-Scale Models
csciCurrent Status Confidence Intervals
csdataStructural Data for Norway
cshapesThe CShapes 2.0 Dataset and Utilities
csmapsPreformatted Maps of Norway that Don't Need Geolibraries
csmpvBiomarker Confirmation, Selection, Modelling, Prediction, and Validation
csnClosed Skew-Normal Distribution
csodataDownload Data from the CSO 'PxStat' API
cspecComplete Discrete Fourier Transform (DFT) and Periodogram
csppA Tool for the Correlates of State Policy Project Data
csppDataData Only: The Correlates of State Policy Project Dataset
csranksStatistical Tools for Ranks
cssToolsCognitive Social Structure Tools
cstabSelection of Number of Clusters via Normalized Clustering Instability
cstidyHelpful Functions for Cleaning Surveillance Data
cstimeDate and Time Functions for Public Health Purposes
csurveyConstrained Regression for Survey Data
csutilCommon Base-R Problems Relating to Lists
csvRead and Write CSV Files with Selected Conventions
csvreadFast Specialized CSV File Loader
csvwrRead and Write CSV on the Web (CSVW) Tables and Metadata
csvyImport and Export CSV Data with a YAML Metadata Header
ctaContingency Table Analysis Based on ML Fitting of MPH Models
ctbiA Procedure to Clean, Decompose and Aggregate Timeseries
ctfRead and Write Column Text Format (CTF)
ctgdistLikert Category Distance Calculator
ctgtClosed Testing with Globaltest for Pathway Analysis
cthistClinical Trial Registry History
cthreshERContinuous Threshold Expectile Regression
ctlCorrelated Trait Locus Mapping
ctmcdEstimating the Parameters of a Continuous-Time Markov Chain from Discrete-Time Data
ctmcmoveModeling Animal Movement with Continuous-Time Discrete-Space Markov Chains
ctmleCollaborative Targeted Maximum Likelihood Estimation
ctmmContinuous-Time Movement Modeling
ctmvaContinuous-Time Multivariate Analysis
ctpmContinuous-Time Phylogenetic Modeling
ctqrCensored and Truncated Quantile Regression
ctrdataRetrieve and Analyze Clinical Trials in Public Registers
ctrialsgovQuery Data from U.S. National Library of Medicine's Clinical Trials Database
ctrlGeneAssess the Stability of Candidate Housekeeping Genes
ctsfeaturesAnalyzing Categorical Time Series
ctvCRAN Task Views
cuReParametric Cure Model Estimation
cubarCodon Usage Bias Analysis
cubatureAdaptive Multivariate Integration over Hypercubes
cubbleA Vector Spatio-Temporal Data Structure for Data Analysis
cubelyrA Data Cube 'dplyr' Backend
cubeviewView 3D Raster Cubes Interactively
cubfitsCodon Usage Bias Fits
cubicBsplinesComputation of a Cubic B-Spline Basis and Its Derivatives
cubingRubik's Cube Solving
cucumberBehavior-Driven Development for R
cuda.mlR Interface for the RAPIDS cuML Suite of Libraries
cultevoTools, Measures and Statistical Tests for Cultural Evolution
cumSegChange Point Detection in Genomic Sequences
cumprincFunctions Centered Around Microsoft Excel Cumprinc Function
cumstatsCumulative Descriptive Statistics
cumulocityrClient for the 'Cumulocity' API
cuperdecCumulative Percent Decay Curve Generator
curephEMNPMLE for Logistic-Cox Cure-Rate Model
cureplotsCURE (Cumulative Residual) Plots
curlA Modern and Flexible Web Client for R
currencyapiClient for the 'currencyapi.com' Currency Conversion API
currentSurvivalEstimation of CCI and CLFS Functions
currrApply Mapping Functions in Frequent Saving
curryPartial Function Application with %<%, %-<%, and %><%
cursrCursor and Terminal Manipulation
curstatCIConfidence Intervals for the Current Status Model
curtailmentFinds Binary Outcome Designs Using Stochastic Curtailment
curvHDRFiltering of Flow Cytometry Samples
curveDepthTukey Curve Depth and Distance in the Space of Curves
curvecompMultiple Curve Comparisons Using Parametric Bootstrap
curvirSpecify Reserve Demand Curves
cuspCusp-Catastrophe Model Fitting Using Maximum Likelihood
custom.gauss.quadCustom Made Gauss Quadrature Nodes and Weights
customizedTrainingCustomized Training for Lasso and Elastic-Net Regularized Generalized Linear Models
cusumCumulative Sum (CUSUM) Charts for Monitoring of Hospital Performance
cusumcharterEasier CUSUM Control Charts
cutoffSeek the Significant Cutoff Value
cutpointrDetermine and Evaluate Optimal Cutpoints in Binary Classification Tasks
cvCross-Validating Regression Models
cvAUCCross-Validated Area Under the ROC Curve Confidence Intervals
cvCovEstCross-Validated Covariance Matrix Estimation
cvGEECross-Validated Predictions from GEE
cvToolsCross-Validation Tools for Regression Models
cvapCitizen Voting Age Population
cvarCompute Expected Shortfall and Value at Risk for Continuous Distributions
cvcrandEfficient Design and Analysis of Cluster Randomized Trials
cvequalityTests for the Equality of Coefficients of Variation from Multiple Groups
cvmaPLFAMCross-Validation Model Averaging for Partial Linear Functional Additive Models
cvmdiscCramer von Mises Tests for Discrete or Grouped Distributions
cvmgofCramer-von Mises Goodness-of-Fit Tests
cvmsCross-Validation for Model Selection
cvsemSEM Model Comparison with K-Fold Cross-Validation
cvwraprTools for Cross Validation
cwbtoolsTools to Create, Modify and Manage 'CWB' Corpora
cwotCauchy Weighted Joint Test for Pharmacogenetics Analysis
cxhullConvex Hull
cxrA Toolbox for Modelling Species Coexistence in R
cxxfunplusExtend 'cxxfunction' by Saving the Dynamic Shared Objects
cycleRtoolsTools for Cycling Data Analysis
cyclestreetsCycle Routing and Data for Cycling Advocacy
cyclocompCyclomatic Complexity of R Code
cycloidsTools for Calculating Hypocycloids, Epicycloids, Hypotrochoids, and Epitrochoids
cyclomortSurvival Modeling with a Periodic Hazard Function
cyclotomicThe Field of Cyclotomic Numbers
cyjShinyCytoscape.js Shiny Widget (cyjShiny)
cylcopCircular-Linear Copulas with Angular Symmetry for Movement Data
cymruservicesQuery 'Team Cymru' 'IP' Address, Autonomous System Number ('ASN'), Border Gateway Protocol ('BGP'), Bogon and 'Malware' Hash Data Services
cyphrHigh Level Encryption Wrappers
cystiSimAgent-Based Model for Taenia_solium Transmission and Control
cytofanPlot Fan Plots for Cytometry Data using 'ggplot2'
cytometreeAutomated Cytometry Gating and Annotation
cytominerMethods for Image-Based Cell Profiling
czechratesCzech Interest & Foreign Exchange Rates
czsoUse Open Data from the Czech Statistical Office in R
D2MCSData Driving Multiple Classifier System
D3mirtDescriptive 3D Multidimensional Item Response Theory Modeling
D3partitionRInteractive Charts of Nested and Hierarchical Data with 'D3.js'
D4TAlink.lightFAIR Data - Workflow Management
DADiscriminant Analysis for Evolutionary Inference
DAAGData Analysis and Graphics Data and Functions
DAAGbioData Sets and Functions, for Demonstrations with Expression Arrays and Gene Sequences
DACFData Analysis with Ceiling and/or Floor Data
DAIMEEffects of Changing Deposition Rates
DAISIEDynamical Assembly of Islands by Speciation, Immigration and Extinction
DAISIEprepExtracts Phylogenetic Island Community Data from Phylogenetic Trees
DAKSData Analysis and Knowledge Spaces
DALEXmoDel Agnostic Language for Exploration and eXplanation
DALEXtraExtension for 'DALEX' Package
DALSMNonparametric Double Additive Location-Scale Model (DALSM)
DALYThe DALY Calculator - Graphical User Interface for Probabilistic DALY Calculation in R
DAMOCLESDynamic Assembly Model of Colonization, Local Extinction and Speciation
DATAstudioThe Research Data Warehouse of Miguel de Carvalho
DArandDifferential Analysis with Random Reference Genes
DBESTDetecting Breakpoints and Estimating Segments in Trend
DBHCSequence Clustering with Discrete-Output HMMs
DBIR Database Interface
DBItestTesting DBI Backends
DBModelSelectDistribution-Based Model Selection
DBNMFrankRank Selection for Non-Negative Matrix Factorization
DBRDiscrete Beta Regression
DBTCDada-BLAST-Taxon Assign-Condense Metabarcode Analysis
DBTCShinyDada-BLAST-Taxon Assign-Condense Metabarcode Analysis 'shiny' Application
DBfitA Double Bootstrap Method for Analyzing Linear Models with Autoregressive Errors
DBpowerFinite Sample Power Calculations for Detection Boundary Tests
DCCADetrended Fluctuation and Detrended Cross-Correlation Analysis
DCEMClustering Big Data using Expectation Maximization Star (EM*) Algorithm
DCEmgmtDCE Data Reshaping and Processing
DCEtoolEfficient and Accessible Discrete Choice Experiments
DCGData Cloud Geometry (DCG): Using Random Walks to Find Community Structure in Social Network Analysis
DCLClaims Reserving under the Double Chain Ladder Model
DCLEARDistance Based Cell Lineage Reconstruction
DCODEList Linear n-Peptide Constraints for Overlapping Protein Regions
DCPODynamic Comparative Public Opinion
DCSmoothNonparametric Regression and Bandwidth Selection for Spatial Models
DCchoiceAnalyzing Dichotomous Choice Contingent Valuation Data
DChaosChaotic Time Series Analysis
DClusterFunctions for the Detection of Spatial Clusters of Diseases
DClustermModel-Based Detection of Disease Clusters
DDDDiversity-Dependent Diversification
DDHFmVariance Stabilization by Data-Driven Haar-Fisz (for Microarrays)
DDIwRDDI with R
DDLDoubly Debiased Lasso (DDL)
DDMDeath Registration Coverage Estimation
DDPMData Sets for Discrete Probability Models
DDPNADisease-Drived Differential Proteins Co-Expression Network Analysis
DDRTreeLearning Principal Graphs with DDRTree
DDoutlierDistance & Density-Based Outlier Detection
DEBBIDifferential Evolution-Based Bayesian Inference
DECIDEDEComposition of Indirect and Direct Effects
DEETDifferential Expression Enrichment Tool
DEEVDDensity Estimation by Extreme Value Distributions
DEGREInferring Differentially Expressed Genes using Generalized Linear Mixed Models
DELTDKernel Density Estimation using Lifetime Distributions
DEMThe Distributed EM Algorithms in Multivariate Gaussian Mixture Models
DEMOVADEvelopment (of Multi-Linear QSPR/QSAR) MOdels VAlidated using Test Set
DEPONS2RRead, Plot and Analyse Output from the DEPONS Model
DESDiscrete Event Simulation
DEoptimGlobal Optimization by Differential Evolution
DEoptimRDifferential Evolution Optimization in Pure R
DFADetrended Fluctuation Analysis
DFA.CANCORLinear Discriminant Function and Canonical Correlation Analysis
DFBADistribution-Free Bayesian Analysis
DFDExtract Drugs from Differential Expression Data from LINCS Database
DFITDifferential Functioning of Items and Tests
DGEARDifferential Gene Expression Analysis with R
DGEobjDifferential Gene Expression (DGE) Analysis Results Data Object
DGEobj.utilsDifferential Gene Expression (DGE) Analysis Utility Toolkit
DGLMExtPoisDouble Generalized Linear Models Extending Poisson Regression
DGMDynamic Graphical Models
DHARMaResidual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models
DHBinsHexmaps for NZ District Health Boards
DHS.ratesCalculates Demographic Indicators
DICOMreadReading and Saving DICOM Image Files
DIDmultiplegtEstimation in DID with Multiple Groups and Periods
DIDmultiplegtDYNEstimation in Difference-in-Difference Designs with Multiple Groups and Periods
DIFMDynamic ICAR Spatiotemporal Factor Models
DIFboostDetection of Differential Item Functioning (DIF) in Rasch Models by Boosting Techniques
DIFlassoA Penalty Approach to Differential Item Functioning in Rasch Models
DIFplusMultilevel Mantel-Haenszel Statistics for Differential Item Functioning Detection
DIFshinyDifferential Item Functioning via Shiny Application
DIFtreeItem Focussed Trees for the Identification of Items in Differential Item Functioning
DIGSSDetermination of Intervals Using Georeferenced Survey Simulation
DIMEDifferential Identification using Mixture Ensemble
DIMORADiffusion Models R Analysis
DIRECTBayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior
DISTRIBFour Essential Functions for Statistical Distributions Analysis: A New Functional Approach
DIZtoolsLightweight Utilities for 'DIZ' R Package Development
DIZutilsUtilities for 'DIZ' R Package Development
DIconvexFinding Patterns of Monotonicity and Convexity in Data
DImodelsDiversity-Interactions (DI) Models
DImodelsMultiFit Multivariate Diversity-Interactions Models with Repeated Measures
DImodelsVisVisualising and Interpreting Statistical Models Fit to Compositional Data
DIscBIOA User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics
DJLDistance Measure Based Judgment and Learning
DLASSOImplementation of Adaptive or Non-Adaptive Differentiable Lasso and SCAD Penalties in Linear Models
DLEGFMDistributed Loading Estimation for General Factor Model
DLLDecorrelated Local Linear Estimator
DLMtoolData-Limited Methods Toolkit
DLPCAThe Distributed Local PCA Algorithm
DMCfunDiffusion Model of Conflict (DMC) in Reaction Time Tasks
DMMFDaily Based Morgan-Morgan-Finney (DMMF) Soil Erosion Model
DMQDynamic Multiple Quantile (DMQ) Model
DMRnetDelete or Merge Regressors Algorithms for Linear and Logistic Model Selection and High-Dimensional Data
DMTLTools for Applying Distribution Mapping Based Transfer Learning
DMtestDifferential Methylation Tests (DMtest)
DMwR2Functions and Data for the Second Edition of "Data Mining with R"
DNAmixturesLiteStatistical Inference for Mixed Traces of DNA (Lite-Version)
DNAseqtestGenerating and Testing DNA Sequences
DNAtoolsTools for Analysing Forensic Genetic DNA Data
DNH4Crawling for Daum News Text
DNLCDifferential Network Local Consistency Analysis
DNMFDiscriminant Non-Negative Matrix Factorization
DNetFinderEstimating Differential Networks under Semiparametric Gaussian Graphical Models
DOEMThe Distributed Online Expectation Maximization Algorithms to Solve Parameters of Poisson Mixture Models
DOPEDrug Ontology Parsing Engine
DOSDesign of Observational Studies
DOS2Design of Observational Studies, Companion to the Second Edition
DOSPortfolioDynamic Optimal Shrinkage Portfolio
DOTRender and Export DOT Graphs in R
DOVEDurability of Vaccine Efficacy
DOYPAColorsDon't Overthink Your Palette of Colors
DOvalidationKernel Hazard Estimation with Best One-Sided and Double One-Sided Cross-Validation
DPBBMDirichlet Process Beta-Binomial Mixture
DPPInference of Parameters of Normal Distributions from a Mixture of Normals
DPQDensity, Probability, Quantile ('DPQ') Computations
DPQmpfrDPQ (Density, Probability, Quantile) Distribution Computations using MPFR
DPTMDynamic Panel Multiple Threshold Model with Fixed Effects
DPpackDifferentially Private Statistical Analysis and Machine Learning
DPtreeDirichlet-Based Polya Tree
DQAguiGraphical User Interface for Data Quality Assessment
DQAstatsCore Functions for Data Quality Assessment
DR.SCJoint Dimension Reduction and Spatial Clustering
DRAYLComputation of Rayleigh Densities of Arbitrary Dimension
DRDIDDoubly Robust Difference-in-Differences Estimators
DRDRtestA Nonparametric Doubly Robust Test for Continuous Treatment Effect
DREGARRegularized Estimation of Dynamic Linear Regression in the Presence of Autocorrelated Residuals (DREGAR)
DRHotNetDifferential Risk Hotspots in a Linear Network
DRIPDiscontinuous Regression and Image Processing
DRRDimensionality Reduction via Regression
DRaWRDiscriminative Random Walk with Restart
DRomicsDose Response for Omics
DRqualityQuality Measurements for Dimensionality Reduction
DRviaSPCNDrug Repurposing in Cancer via a Subpathway Crosstalk Network
DSAIDEDynamical Systems Approach to Infectious Disease Epidemiology (Ecology/Evolution)
DSAIRMDynamical Systems Approach to Immune Response Modeling
DSAMData Splitting Algorithms for Model Developments
DSBayesBayesian Subgroup Analysis in Clinical Trials
DSI'DataSHIELD' Interface
DSLDistributed Storage and List
DSLite'DataSHIELD' Implementation on Local Datasets
DSMolgenisArmadillo'DataSHIELD' Client for 'MOLGENIS Armadillo'
DSOpal'DataSHIELD' Implementation for 'Opal'
DSSATA Comprehensive R Interface for the DSSAT Cropping Systems Model
DSSPImplementation of the Direct Sampling Spatial Prior
DSWEData Science for Wind Energy
DSjobtrackerWhat Skills and Qualifications are Required for Data Science Related Jobs?
DSpotyGet 'Spotify' API Multiple Information
DTA Wrapper of the JavaScript Library 'DataTables'
DTATDose Titration Algorithm Tuning
DTAXGDiagnostic Test Assessment in the Absence of Gold Standard
DTAplotsCreates Plots Accompanying Bayesian Diagnostic Test Accuracy Meta-Analyses
DTComPairComparison of Binary Diagnostic Tests in a Paired Study Design
DTDADoubly Truncated Data Analysis
DTDA.cifDoubly Truncated Data Analysis, Cumulative Incidence Functions
DTDA.niDoubly Truncated Data Analysis, Non Iterative
DTMCPackSuite of Functions Related to Discrete-Time Discrete-State Markov Chains
DTRKernSmoothEstimate and Make Inference About Optimal Treatment Regimes via Smoothed Methods
DTRlearn2Statistical Learning Methods for Optimizing Dynamic Treatment Regimes
DTRregDTR Estimation and Inference via G-Estimation, Dynamic WOLS, Q-Learning, and Dynamic Weighted Survival Modeling (DWSurv)
DTSEADrug Target Set Enrichment Analysis
DTSgA Class for Working with Time Series Data Based on 'data.table' and 'R6' with Largely Optional Reference Semantics
DTWBIImputation of Time Series Based on Dynamic Time Warping
DTWUMIImputation of Multivariate Time Series Based on Dynamic Time Warping
DTwrappersSimplified Data Analysis with Wrapper Functions for the 'Data.Table' Package
DTwrappers2Extensions of 'DTwrappers'
DVHmetricsAnalyze Dose-Volume Histograms and Check Constraints
DWDLargeRFast Algorithms for Large Scale Generalized Distance Weighted Discrimination
DWLSGene Expression Deconvolution Using Dampened Weighted Least Squares
DWLassoDegree Weighted Lasso
DWregParametric Regression for Discrete Response
DYMDid You Mean?
DYNATEDynamic Aggregation Testing
DamiaNNNeural Network Numerai
DandEFADandelion Plot for R-Mode Exploratory Factor Analysis
DanielBiostatistics10thFunctions for Wayne W. Daniel's Biostatistics, Tenth Edition
DarkThe Analysis of Dark Adaptation Data
DarkDivEstimating Dark Diversity and Site-Specific Species Pools
DasstTools for Reading, Processing and Writing 'DSSAT' Files
DatAssimData Assimilation
DataCleanData Cleaning
DataCombineTools for Easily Combining and Cleaning Data Sets
DataEditRAn Interactive Editor for Viewing, Entering, Filtering & Editing Data
DataExplorerAutomate Data Exploration and Treatment
DataFakeRGenerate Fake Data for Relational Databases
DataGraphExport Data from 'R' to 'DataGraph'
DataLoaderImport Multiple File Types
DataMetProcessMeteorological Data Processing
DataPackageRConstruct Reproducible Analytic Data Sets as R Packages
DataSetsUniA Collection of Univariate Data Sets
DataSpaceRInterface to 'the CAVD DataSpace'
DataVisualizationsVisualizations of High-Dimensional Data
DataVizData Visualisation Using an HTML Page and 'D3.js'
DatabaseConnectorConnecting to Various Database Platforms
DatabaseConnectorJarsJAR Dependencies for the 'DatabaseConnector' Package
DatabionicSwarmSwarm Intelligence for Self-Organized Clustering
DatastreamDSWS2RProvides a Link Between the 'Refinitiv Datastream' System and R
DatastreamRDatastream API
DateTimeRangePickerA Datetime Range Picker Widget for Usage in 'Shiny' Applications
DaviesThe Davies Quantile Function
DeBoinRBox-Plots and Outlier Detection for Probability Density Functions
DeCAFSDetecting Changes in Autocorrelated and Fluctuating Signals
DeRezende.FerreiraZero Coupon Yield Curve Modelling
DebiasInferEfficient Inference on High-Dimensional Linear Model with Missing Outcomes
DeclareDesignDeclare and Diagnose Research Designs
DecomposeREmpirical Mode Decomposition for Cyclostratigraphy
DecorateRFit and Deploy DECORATE Trees
DeducerA Data Analysis GUI for R
DeductiveRDeductive Rational Method
DelaporteStatistical Functions for the Delaporte Distribution
DelayedEffect.DesignSample Size and Power Calculations using the APPLE, SEPPLE, APPLE+ and SEPPLE+ Methods
DeltaMeasure of Agreement Between Two Raters
DeltaMANDelta Measurement of Agreement for Nominal Data
DemoDecompDecompose Demographic Functions
DemoKinEstimate Population Kin Distribution
DemografixeRExtrapolate Gender, Age and Nationality of a Name
DemographicTableCreating Demographic Table
DendSerDendrogram Seriation: Ordering for Visualisation
DendroSyncA Set of Tools for Calculating Spatial Synchrony Between Tree-Ring Chronologies
DensParcorrDens-Based Method for Partial Correlation Estimation in Large Scale Brain Networks
DepCensDependent Censoring Regression Models
DepthProcStatistical Depth Functions for Multivariate Analysis
DerivSymbolic Differentiation
DescToolsTools for Descriptive Statistics
DescToolsAddInsInteractive Functions to be Used as Shortcuts in 'RStudio'
DescrTab2Publication Quality Descriptive Statistics Tables
DescribeDFDescription of a Data Frame
DescribeDisplayAn Interface to the 'DescribeDisplay' 'GGobi' Plugin
DescriptiveRepresentationCalculatorDescriptive Representation Calculator: Characterizing Observed and Expected Representation
DescriptiveStats.OBeuDescriptive Statistics 'OpenBudgets.eu'
DescriptiveWHDescriptive Statistics
Design.parametersParameters of the Experimental Designs
DesignCTPBDesign Clinical Trials with Potential Biomarker Effect
DesignLibraryLibrary of Research Designs
DetLifeInsuranceLife Insurance Premium and Reserves Valuation
DetMCDImplementation of the DetMCD Algorithm (Robust and Deterministic Estimation of Location and Scatter)
DetRSuite of Deterministic and Robust Algorithms for Linear Regression
DevTreatRulesDevelop Treatment Rules with Observational Data
Devore7Data sets from Devore's "Prob and Stat for Eng (7th ed)"
DforestDecision Forest
DiDforBigDataA Big Data Implementation of Difference-in-Differences Estimation with Staggered Treatment
DiNAMIC.DuoFinding Recurrent DNA Copy Number Alterations and Differences
DiPALMDifferential Pattern Analysis via Linear Modeling
DiPhiSeqRobust Tests for Differential Dispersion and Differential Expression in RNA-Sequencing Data
DiPsDirectional Penalties for Optimal Matching in Observational Studies
DiSCosDistributional Synthetic Controls Estimation
DiSSModFitting Sample Selection Models for Discrete Response Variables
DiagrammeRGraph/Network Visualization
DiagrammeRsvgExport DiagrammeR Graphviz Graphs as SVG
DiallelAnalysisRDiallel Analysis with R
DiceDesignDesigns of Computer Experiments
DiceEvalConstruction and Evaluation of Metamodels
DiceKrigingKriging Methods for Computer Experiments
DiceOptimKriging-Based Optimization for Computer Experiments
DiceViewMethods for Visualization of Computer Experiments Design and Surrogate
DictR6 Based Key-Value Dictionary Implementation
DidacticBoostA Simple Implementation and Demonstration of Gradient Boosting
DiderotBibliographic Network Analysis
DiffCorrAnalyzing and Visualizing Differential Correlation Networks in Biological Data
DiffNetIdentifying Significant Node Scores using Network Diffusion Algorithm
DiffXTablesPattern Analysis Across Contingency Tables
DirStatsNonparametric Methods for Directional Data
DireLinear Regressions with a Latent Outcome Variable
DirectEffectsEstimating Controlled Direct Effects for Explaining Causal Findings
DirectStandardisationAdjusted Means and Proportions by Direct Standardisation
DirectedClusteringDirected Weighted Clustering Coefficient
DirectionalA Collection of Functions for Directional Data Analysis
DirichletRegDirichlet Regression
DisHetEstimate the Gene Expression Levels and Component Proportions of the Normal, Stroma (Immune) and Tumor Components of Bulk Tumor Samples
DisImpactCalculates Disproportionate Impact When Binary Success Data are Disaggregated by Subgroups
DisaggregateTSHigh-Dimensional Temporal Disaggregation
DiscreteDatasetsExample Data Sets for Use with Discrete Statistical Tests
DiscreteFDRMultiple Testing Procedures with Adaptation for Discrete Tests
DiscreteInverseWeibullDiscrete Inverse Weibull Distribution
DiscreteLaplaceDiscrete Laplace Distributions
DiscreteQvalueImproved q-Values for Discrete Uniform and Homogeneous Tests
DiscreteTestsVectorised Computation of P-Values and Their Supports for Several Discrete Statistical Tests
DiscreteWeibullDiscrete Weibull Distributions (Type 1 and 3)
DisimForMixedCalculate Dissimilarity Matrix for Dataset with Mixed Attributes
DistPlotterA Graphical User Interface for Plotting Common Univariate Distributions
DistanceDistance Sampling Detection Function and Abundance Estimation
DistatisRDiSTATIS Three Way Metric Multidimensional Scaling
DistributacalculProbability Distribution Functions
DistributionOptimizationDistribution Optimization
DistributionTestPowerful Goodness-of-Fit Tests Based on the Likelihood Ratio
DistributionUtilsDistribution Utilities
DivEDiversity Estimator
DiversificationREconometric Tools to Measure Portfolio Diversification
DoE.MIParrayCreation of Arrays by Mixed Integer Programming
DoE.baseFull Factorials, Orthogonal Arrays and Base Utilities for DoE Packages
DoE.wrapperWrapper Package for Design of Experiments Functionality
DoEstRareRare Variant Association Test Based on Position Density Estimation
DockerParallelUsing the Docker Container to Create R Workers on Local or Cloud Platform
DodgeAcceptance Sampling Ideas Originated by H.F. Dodge
DominoDataR'Domino Data R SDK'
DoseFindingPlanning and Analyzing Dose Finding Experiments
DoubleConeTest Against Parametric Regression Function
DoubleExpSeqDifferential Exon Usage Test for RNA-Seq Data via Empirical Bayes Shrinkage of the Dispersion Parameter
DoubleMLDouble Machine Learning in R
DowdFunctions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's Book Measuring Market Risk
DpitDistribution Pitting
DrBatsData Representation: Bayesian Approach That's Sparse
DrDimontDrug Response Prediction from Differential Multi-Omics Networks
DrImputeImputing Dropout Events in Single-Cell RNA-Sequencing Data
DramaAnalysisAnalysis of Dramatic Texts
DriftBurstHypothesisCalculates the Test-Statistic for the Drift Burst Hypothesis
DrillRR Driver for Apache Drill
DrugExposureDiagnosticsDiagnostics for OMOP Common Data Model Drug Records
DrugSim2DRPredict Drug Functional Similarity to Drug Repurposing
DrugUtilisationSummarise Patient-Level Drug Utilisation in Data Mapped to the OMOP Common Data Model
DstarMAnalyze Two Choice Reaction Time Data with the D*M Method
DtDDistance to Default
DtableoneTabular Comparison of Paired Diagnostic Tests
DurgaEffect Size Estimation and Visualisation
DyMEPDynamic Multi Environment Phenology-Model
DySSDynamic Screening Systems
DykstraQuadratic Programming using Cyclic Projections
DynClustDenoising and Clustering for Dynamical Image Sequence (2D or 3D)+t
DynForestRandom Forest with Multivariate Longitudinal Predictors
DynTxRegimeMethods for Estimating Optimal Dynamic Treatment Regimes
DynaRankRInferring Longitudinal Dominance Hierarchies
DynamicGPModelling and Analysis of Dynamic Computer Experiments
DynareRBringing the Power of 'Dynare' to 'R', 'R Markdown', and 'Quarto'
DysPIADysregulated Pathway Identification Analysis
DysPIADataBackground and Pathway Data Used in 'DysPIA'
d3NetworkTools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R
d3TreeCreate Interactive Collapsible Trees with the JavaScript 'D3' Library
d3plusSeamless 'D3Plus' Integration
d3poFast and Beautiful Interactive Visualization for 'Markdown' and 'Shiny'
d3r'd3.js' Utilities for R
d4storagehub4RInterface to 'D4Science' 'StorageHub' API
dBlockmodelingDeterministic Blockmodeling of Signed, One-Mode and Two-Mode Networks
dCURDimension Reduction with Dynamic CUR
dChipIOMethods for Reading dChip Files
dCovTSDistance Covariance and Correlation for Time Series Analysis
dGAselIDGenetic Algorithm with Incomplete Dominance for Feature Selection
dHSICIndependence Testing via Hilbert Schmidt Independence Criterion
dLagMTime Series Regression Models with Distributed Lag Models
dModDynamic Modeling and Parameter Estimation in ODE Models
dPCPAutomated Analysis of Multiplex Digital PCR Data
dQTG.seqA BSA Software for Detecting All Types of QTLs in BC, DH, RIL and F2
dSTEMMultiple Testing of Local Extrema for Detection of Change Points
dSVADirect Surrogate Variable Analysis
dTBMMulti-Way Spherical Clustering via Degree-Corrected Tensor Block Models
daaremDamped Anderson Acceleration with Epsilon Monotonicity for Accelerating EM-Like Monotone Algorithms
dabestrData Analysis using Bootstrap-Coupled Estimation
dabrDatabase Management with R
daccDetection and Attribution Analysis of Climate Change
dadThree-Way / Multigroup Data Analysis Through Densities
dadjokeDisplays a Dad Joke
dadjokeapiReturn a Random Dad Joke
dadosTranslate Datasets to Portuguese
daeFunctions Useful in the Design and ANOVA of Experiments
daewrDesign and Analysis of Experiments with R
daffDiff, Patch and Merge for Data.frames
dafishrDownload, Wrangle, and Analyse Vessel Monitoring System Data
dafsData Analysis for Forensic Scientists
dagRDirected Acyclic Graphs: Analysis and Data Simulation
dagirliteSpatial Vector Data for Danmarks Administrative Geografiske Inddeling DAGI
dagittyGraphical Analysis of Structural Causal Models
dagwoodDAGs with Omitted Objects Displayed (DAGWOOD)
daiRInterface with Google Cloud Document AI API
dailData from Access to Information Law
daiquiriData Quality Reporting for Temporal Datasets
daltoolboxLeveraging Experiment Lines to Data Analytics
daltoolboxdpData Pre-Processing Extensions
damData Analysis Metabolomics
damAOICreate an 'Area of Interest' Around a Constructed Dam for Comparative Impact Evaluations
damrInterface to Drosophila Activity Monitor System Result Files
damsDams in the United States from the National Inventory of Dams (NID)
dang'Dang' Associated New Goodies
daniDesign and Analysis of Non-Inferiority Trials
dannDiscriminant Adaptive Nearest Neighbor Classification
danstatR Client for the Statistics Denmark Databank API
daqapoData Quality Assessment for Process-Oriented Data
darkskyTools to Work with the 'Dark Sky' 'API'
dartRImporting and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis
dartR.baseAnalysing 'SNP' and 'Silicodart' Data - Basic Functions
dartR.captiveAnalysing 'SNP' Data to Support Captive Breeding
dartR.dataAuxiliary Data Package for Our Main Package 'dartR'
dartR.popgenAnalysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis
dartR.simComputer Simulations of 'SNP' Data
dartR.spatialApplying Landscape Genomic Methods on 'SNP' and 'Silicodart' Data
dartRverseInstall and Load the 'dartRverse' Suits of Packages
dashboardthemesCustomise the Appearance of 'shinydashboard' Applications using Themes
datTools for Data Manipulation
data.tableExtension of `data.frame`
data.treeGeneral Purpose Hierarchical Data Structure
data.validatorAutomatic Data Validation and Reporting
data360rWrapper for 'TCdata360' and 'Govdata360' API
dataCompareRCompare Two Data Frames and Summarise the Difference
dataMaidA Suite of Checks for Identification of Potential Errors in a Data Frame as Part of the Data Screening Process
dataMetaCreate and Append a Data Dictionary for an R Dataset
dataMojoReshape Data Table
dataPreparationAutomated Data Preparation
dataReporterReproducible Data Screening Checks and Report of Possible Errors
dataRetrievalRetrieval Functions for USGS and EPA Hydrology and Water Quality Data
dataSDAData Sets for Symbolic Data Analysis
databraryrInteract with the 'Databrary.org' API
dataclassEasily Create Structured Lists or Data Frames with Input Validation
datacleanrInteractive and Reproducible Data Cleaning
datacutrSDTM Datacut
datadictionaryCreate a Data Dictionary
datadogrR Client for 'Datadog' API
dataframeexplorerFamiliarity with Dataframes Before Data Manipulation
datafsmEstimating Finite State Machine Models from Data
datagovsgRCall Real Time APIs from Data Gov Singapore
datamodsModules to Import and Manipulate Data in 'Shiny'
datanaData and Functions to Accompany Analisis De Datos Con R
datanuggetCreate, and Refine Data Nuggets
dataonderivativesEasily Source Publicly Available Data on Derivatives
dataoneR Interface to the DataONE REST API
datapackA Flexible Container to Transport and Manipulate Data and Associated Resources
datapastaR Tools for Data Copy-Pasta
dataprepEfficient and Flexible Data Preprocessing Tools
dataquieRData Quality in Epidemiological Research
datardisData from the Doctor Who Series
dataresqcC3S Quality Control Tools for Historical Climate Data
datariumData Bank for Statistical Analysis and Visualization
datarobot'DataRobot' Predictive Modeling API
datasailrRow by Row Data Processing Tool, Using 'DataSailr' Script
datasauRusDatasets from the Datasaurus Dozen
dataseriesSwitzerland's Data Series in One Place
datasetjsonRead and Write CDISC Dataset JSON Files
datasets.loadGraphical Interface for Loading Datasets
datasetsICRDatasets from the Book "An Introduction to Clustering with R"
dataspiceCreate Lightweight Schema.org Descriptions of Data
datasteprAn Implementation of a SAS-Style Data Step
dataverifyrA Lightweight, Flexible, and Fast Data Validation Package that Can Handle All Sizes of Data
dataverseClient for Dataverse 4+ Repositories
datawizardEasy Data Wrangling and Statistical Transformations
datazoom.amazoniaSimplify Access to Data from the Amazon Region
dateFunctions for Handling Dates
datebackCollect and Install R Packages on a Specified Date with Dependencies
datefixRStandardize Dates in Different Formats or with Missing Data
datelifeScientific Data on Time of Lineage Divergence for Your Taxa
daterangepickerCreate a Shiny Date-Range Input
datetimeNominal Dates, Times, and Durations
datetimeoffsetDatetimes with Optional UTC Offsets and/or Heterogeneous Time Zones
datetimeutilsUtilities for Dates and Times
datetoisoModify Dates to ISO Standard ("International Organization for Standardization")
dateutilsDate Utils
datoramarInterface to the 'Datorama' API
datosTraduce al Español Varios Conjuntos de Datos de Práctica
datplotPreparation of Object Dating Ranges for Density Plots (Aoristic Analysis)
datr'Dat' Protocol Interface
datrProfileColumn Profile for Tables and Datasets
dauphinCompact Standard for Australian Phone Numbers
dawaiDiscriminant Analysis with Additional Information
daySupplyCalculating Days' Supply and Daily Dose of Prescriptions
daymetrInterface to the 'Daymet' Web Services
dbGaPCheckupdbGaP Checkup
dbMCConfidence Interval for Matrix Completion via De-Biased Estimator
dbWebFormsProduce R Functions to Create HTML Forms Based on SQL Meta Data
dbacfAutocovariance Estimation via Difference-Based Methods
dbartsDiscrete Bayesian Additive Regression Trees Sampler
dbcspDistance-Based Common Spatial Patterns
dbdDiscretised Beta Distribution
dbflobrRead and Write Files to SQLite Databases
dbglmGeneralised Linear Models by Subsampling and One-Step Polishing
dbhydroR'DBHYDRO' Hydrologic and Water Quality Data
dblcensCompute the NPMLE of Distribution Function from Doubly Censored Data, Plus the Empirical Likelihood Ratio for F(T)
dblrDiscrete Boosting Logistic Regression
dbmssDistance-Based Measures of Spatial Structures
dbnRDynamic Bayesian Network Learning and Inference
dbnlearnDynamic Bayesian Network Structure Learning, Parameter Learning and Forecasting
dbparserDrugs Databases Parser
dbplotSimplifies Plotting Data Inside Databases
dbplyrA 'dplyr' Back End for Databases
dbscanDensity-Based Spatial Clustering of Applications with Noise (DBSCAN) and Related Algorithms
dbstatsDistance-Based Statistics
dbxA Fast, Easy-to-Use Database Interface
dc3netInferring Condition-Specific Networks via Differential Network Inference
dcTensorDiscrete Matrix/Tensor Decomposition
dccmidasDCC Models with GARCH and GARCH-MIDAS Specifications in the Univariate Step, RiskMetrics, Moving Covariance and Scalar and Diagonal BEKK Models
dccppFast Computation of Distance Correlations
dciferGenetic Relatedness Between Polyclonal Infections
dcloneData Cloning and MCMC Tools for Maximum Likelihood Methods
dclustDivisive Hierarchical Clustering
dcm2Calculating the M2 Model Fit Statistic for Diagnostic Classification Models
dcmleHierarchical Models Made Easy with Data Cloning
dcmodifyModify Data Using Externally Defined Modification Rules
dcorVSVariable Selection Algorithms Using the Distance Correlation
dcortoolsProviding Fast and Flexible Functions for Distance Correlation Analysis
dcovA Fast Implementation of Distance Covariance
dcurverUtility Functions for Davidian Curves
dcurvesDecision Curve Analysis for Model Evaluation
ddalphaDepth-Based Classification and Calculation of Data Depth
ddcDistance Density Clustering Algorithm
ddeSolve Delay Differential Equations
ddecomposeDetailed Distributional Decomposition
ddiThe Data Defect Index for Samples that May not be IID
ddivData Driven I-v Feature Extraction
ddmlDouble/Debiased Machine Learning
ddpDesirable Dietary Pattern
ddpcaDiagonally Dominant Principal Component Analysis
ddpcrAnalysis and Visualization of Droplet Digital PCR in R and on the Web
ddplotCreate D3 Based SVG Graphics
ddsPLSData-Driven Sparse Partial Least Squares
ddstData Driven Smooth Tests
ddtlcmLatent Class Analysis with Dirichlet Diffusion Tree Process Prior
deBInferBayesian Inference for Differential Equations
deBifBifurcation Analysis of Ordinary Differential Equation Systems
deFitFitting Differential Equations to Time Series Data
deSolveSolvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE')
deTSTissue-Specific Enrichment Analysis
deaRConventional and Fuzzy Data Envelopment Analysis
deadbandStatistical Deadband Algorithms Comparison
dealLearning Bayesian Networks with Mixed Variables
debarA Post-Clustering Denoiser for COI-5P Barcode Data
debestDuration Estimation for Biomarker Enrichment Studies and Trials
debkeeprAnalysis of Non-Decimal Currencies and Double-Entry Bookkeeping
debugmeDebug R Packages
debugrDebug Tool to Watch Objects/Expressions While Running an R Script
decidoBindings for 'Mapbox' Ear Cutting Triangulation Library
decisionStatistical Decision Analysis
decisionSupportQuantitative Support of Decision Making under Uncertainty
deckglAn R Interface to 'deck.gl'
declaredFunctions for Declared Missing Values
decodeDifferential Co-Expression and Differential Expression Analysis
decoderDecode Coded Variables to Plain Text and the Other Way Around
decompDLDecomposition Based Deep Learning Models for Time Series Forecasting
decomposedPSFTime Series Prediction with PSF and Decomposition Methods (EMD and EEMD)
decomprGlobal Value Chain Decomposition
deconDeconvolution Estimation in Measurement Error Models
deconvolveREmpirical Bayes Estimation Strategies
decorRetrieve Code Decorations
decoratorsExtend the Behaviour of a Function without Explicitly Modifying it
deducorrectDeductive Correction, Deductive Imputation, and Deterministic Correction
deductiveData Correction and Imputation Using Deductive Methods
dedupedMaking "Deduplicated" Functions
dedupewiderDeduplication Across Multiple Columns
deepA Neural Networks Framework
deepMOUClustering of Short Texts by Mixture of Unigrams and Its Deep Extensions
deepNNDeep Learning
deepRstudioSeamless Language Translation in 'RStudio' using 'DeepL' API and 'Rstudioapi'
deepdepVisualise and Explore the Deep Dependencies of R Packages
deepdiveDeep Learning for General Purpose
deepgmmDeep Gaussian Mixture Models
deepgpBayesian Deep Gaussian Processes using MCMC
deeplrInterface to the 'DeepL' Translation API
deepnetDeep Learning Toolkit in R
deepredeffDeep Learning Prediction of Effectors
deepregressionFitting Deep Distributional Regression
deeptimePlotting Tools for Anyone Working in Deep Time
deeptrafoFitting Deep Conditional Transformation Models
defaultChange the Default Arguments in R Functions
defineOptionsDefine and Parse Command Line Options
defineRCreates Define XML Documents
deflateBRDeflate Nominal Brazilian Reais
deflistDeferred List - A Read-Only List-Like Object with Deferred Access
deforestableClassify RGB Images into Forest or Non-Forest
deformSpatial Deformation and Dimension Expansion Gaussian Processes
deformulaIntegration of One-Dimensional Functions with Double Exponential Formulas
degdayCompute Degree Days
degreenetModels for Skewed Count Distributions Relevant to Networks
degrossDensity Estimation from GROuped Summary Statistics
dejaVuMultiple Imputation for Recurrent Events
delayedA Framework for Parallelizing Dependent Tasks
deldirDelaunay Triangulation and Dirichlet (Voronoi) Tessellation
deltaPlotRIdentification of Dichotomous Differential Item Functioning (DIF) using Angoff's Delta Plot Method
deltaccdQuantify Rhythmic Gene Co-Expression Relative to a Reference
dematelDecision Making Trial and Evaluation Laboratory Technique in R
demicDynamic Estimator of Microbial Communities
demingDeming, Theil-Sen, Passing-Bablock and Total Least Squares Regression
demoGraphicProviding Demographic Table with the P-Value, Standardized Mean Difference Value
demoKdeKernel Density Estimation for Demonstration Purposes
demoShinyRuns a 'Shiny' App as Demo or Lists All Demo 'Shiny' Apps
demodelrSimulating Differential Equations with Data
demogRAnalysis of Age-Structured Demographic Models
demographyForecasting Mortality, Fertility, Migration and Population Data
demuOptimal Design Emulators via Point Processes
dendRoAnalystA Tool for Processing and Analyzing Dendrometer Data
dendextendExtending 'dendrogram' Functionality in R
dendroNetworkCreate Networks of Dendrochronological Series using Pairwise Similarity
dendroToolsLinear and Nonlinear Methods for Analyzing Daily and Monthly Dendroclimatological Data
dendroextrasExtra Functions to Cut, Label and Colour Dendrogram Clusters
dendrometryForest Estimations and Dendrometric Computations
dendsortModular Leaf Ordering Methods for Dendrogram Nodes
denguedatahubA Tidy Format Datasets of Dengue by Country
denoiSeqDifferential Expression Analysis Using a Bottom-Up Model
denoiseRRegularized Low Rank Matrix Estimation
denovolyzeRStatistical Analyses of De Novo Genetic Variants
densEstBayesDensity Estimation via Bayesian Inference Engines
denseFLMMFunctional Linear Mixed Models for Densely Sampled Data
densitrAnalysing Density Profiles from Resistance Drilling of Trees
densityClustClustering by Fast Search and Find of Density Peaks
densityareaPolygons of Bivariate Density Distributions
densratioDensity Ratio Estimation
denstripDensity Strips and Other Methods for Compactly Illustrating Distributions
denvaxSimple Dengue Test and Vaccinate Cost Thresholds
depcacheCache R Expressions, Taking Their Dependencies into Account
depcoeffDependency Coefficients
depend.truncationStatistical Methods for the Analysis of Dependently Truncated Data
depignerA Utility Package to Help you Deal with "Pignas"
depmixDependent Mixture Models
depmixS4Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4
depsDependency Management with 'roxygen'-Style Comments
depth.plotMultivariate Analogy of Quantiles
depthToolsDepth Tools Package
derivmktsFunctions and R Code to Accompany Derivatives Markets
descManipulate DESCRIPTION Files
descomponerSeasonal Adjustment by Frequency Analysis
descrDescriptive Statistics
describedataMiscellaneous Descriptive Functions
describerDescribe Data in R Using Common Descriptive Statistics
descriptioDescriptive Statistical Analysis
descriptrGenerate Descriptive Statistics
descstatTools for Descriptive Statistics
descstatsrDescriptive Univariate Statistics
desctableProduce Descriptive and Comparative Tables Easily
deseatsData-Driven Locally Weighted Regression for Trend and Seasonality in TS
desiRDesirability Functions for Ranking, Selecting, and Integrating Data
designer'Shiny' UI Prototype Builder
designitBlocking and Randomization for Experimental Design
designmatchMatched Samples that are Balanced and Representative by Design
designrBalanced Factorial Designs
designsizeSample Size Calculation of Various Study Designs
desirabilityFunction Optimization and Ranking via Desirability Functions
desirability2Desirability Functions for Multiparameter Optimization
deskDidactic Econometrics Starter Kit
deslaDesparsified Lasso Inference for Time Series
desplotPlotting Field Plans for Agricultural Experiments
detailsCreate Details HTML Tag for Markdown and Package Documentation
detectAnalyzing Wildlife Data with Detection Error
detectRChange Point Detection
detectRUNSDetect Runs of Homozygosity and Runs of Heterozygosity in Diploid Genomes
detectnormDetect Nonnormality in Meta-Analysis without Raw Data
detectorDetect Data Containing Personally Identifiable Information
detectorsPrediction Data from GPT Detectors
detectseparationDetect and Check for Separation and Infinite Maximum Likelihood Estimates
detourrPortable and Performant Tour Animations
detpackDensity Estimation and Random Number Generation with Distribution Element Trees
detrendeRA Graphical User Interface (GUI) to Visualize and Analyze Dendrochronological Data
detrendrDetrend Images
detzrcrCompare Detrital Zircon Suites
devEMFEMF Graphics Output Device
devFuncClear and Condense Argument Check for User-Defined Functions
devRateQuantify the Relationship Between Development Rate and Temperature in Ectotherms
devoidA Graphic Device that Does Nothing
devtoolsTools to Make Developing R Packages Easier
dexterData Management and Analysis of Tests
dexterMSTCML and Bayesian Calibration of Multistage Tests
dexterguiA Graphical User Interface for Dexter
df2yamlConvert Dataframe to 'YAML'
dfCompareCompare Two Dataframes and Return Adds, Changes, and Deletes
dfadjustDegrees of Freedom Adjustment for Robust Standard Errors
dfcombPhase I/II Adaptive Dose-Finding Design for Combination Studies
dfcrmDose-Finding by the Continual Reassessment Method
dfdrAutomatic Differentiation of Simple Functions
dfexpandAutomatically Expand Delimited Column Values into Multiple Binary Columns with 'dfexpand'
dfidxIndexed Data Frames
dfmetaMeta-Analysis of Phase I Dose-Finding Early Clinical Trials
dfmirroRSimulate a Data Frame Mirroring an Input and Produce Shareable Simulation Code
dfmsDynamic Factor Models
dfmtaPhase I/II Adaptive Dose-Finding Design for MTA
dfoliatRDetection and Analysis of Insect Defoliation Signals in Tree Rings
dfoptimDerivative-Free Optimization
dformulaData Manipulation using Formula
dfpedExtrapolation and Bridging of Adult Information in Early Phase Dose-Finding Paediatrics Studies
dfphase1Phase I Control Charts (with Emphasis on Distribution-Free Methods)
dfrrDichotomized Functional Response Regression
dfsaneaccAccelerated Derivative-Free Method for Large-Scale Nonlinear Systems of Equations
dfvadDiewert and Fox's Method of Value Added Growth Decomposition
dgaCapture-Recapture Estimation using Bayesian Model Averaging
dggridRDiscrete Global Grids
dglarsDifferential Geometric Least Angle Regression
dglmDouble Generalized Linear Models
dgofDiscrete Goodness-of-Fit Tests
dgpsiInterface to 'dgpsi' for Deep and Linked Gaussian Process Emulations
dgumbelThe Gumbel Distribution Functions and Gradients
dhgaDifferential Hub Gene Analysis
dhglmDouble Hierarchical Generalized Linear Models
dhhA Heavy-Headed Distribution
dhis2rClient for the 'DHIS2' Web API
dhlabRNational Library of Norway Quantitative Text Data API Tools
dhsageReproductive Age Female Data of Various Demographic Health Surveys
diDeficit Index (DI)
diagL1Routines for Fit, Inference and Diagnostics in Linear L1 and LAD Models
diagisDiagnostic Plot and Multivariate Summary Statistics of Weighted Samples from Importance Sampling
diagmetaMeta-Analysis of Diagnostic Accuracy Studies with Several Cutpoints
diagonalsBlock Diagonal Extraction or Replacement
diagramFunctions for Visualising Simple Graphs (Networks), Plotting Flow Diagrams
dialrParse, Format, and Validate International Phone Numbers
dialrjarsRequired 'libphonenumber' jars for the 'dialr' Package
dialsTools for Creating Tuning Parameter Values
diapltBeads Summary Plot of Ranges
diathorCalculate Ecological Information and Diatom Based Indices
dibbleDimensional Data Frames
diceCalculate probabilities of various dice-rolling events
diceRDiverse Cluster Ensemble in R
dichromatColor Schemes for Dichromats
dictionaRyRetrieve the Dictionary Definitions of English Words
dictionar6R6 Dictionary Interface
didTreatment Effects with Multiple Periods and Groups
did2sTwo-Stage Difference-in-Differences Following Gardner (2021)
didimputationImputation Estimator from Borusyak, Jaravel, and Spiess (2021)
didrooRFMCompute Recency Frequency Monetary Scores for your Customer Data
diemrDiagnostic Index Expectation Maximisation in R
dietrDiet Estimated Trophic Levels
diezeitR Interface to the ZEIT ONLINE Content API
difNLRDIF and DDF Detection by Non-Linear Regression Models
difRCollection of Methods to Detect Dichotomous Differential Item Functioning (DIF)
difconetDifferential Coexpressed Networks
diffEnrichGiven a List of Gene Symbols, Performs Differential Enrichment Analysis
diffIRTDiffusion IRT Models for Response and Response Time Data
diffcorFisher's z-Tests Concerning Differences Between Correlations
diffdfDataframe Difference Tool
diffdfsCompute the Difference Between Data Frames
diffeRMetrics of Difference for Comparing Pairs of Maps or Pairs of Variables
diffeRenTESComputation of TES-Based Cell Differentiation Trees
diffeeFast and Scalable Learning of Sparse Changes in High-Dimensional Gaussian Graphical Model Structure
diffeqrSolving Differential Equations (ODEs, SDEs, DDEs, DAEs)
diffmatchpatchString Diff, Match, and Patch Utilities
diffobjDiffs for R Objects
diffprivEasy Differential Privacy
diffrDisplay Differences Between Two Files using Codediff Library
diffudistDiffusion Distance for Complex Networks
diffusionForecast the Diffusion of New Products
diffusionMapDiffusion Map
diffvalVegetation Patterns
diffviewerHTML Widget to Show File Differences
digestCreate Compact Hash Digests of R Objects
digiRhythmAnalyzing Animal's Rhythmicity
digitTestsTests for Detecting Irregular Digit Patterns
digitalDLSorteRDeconvolution of Bulk RNA-Seq Data Based on Deep Learning
digitalPCREstimate Copy Number for Digital PCR
digitizeUse Data from Published Plots in R
dilpReconstruct Paleoclimate and Paleoecology with Leaf Physiognomy
dimRedA Framework for Dimensionality Reduction
dimensioMultivariate Data Analysis
dimensionsRGathering Bibliographic Records from 'Digital Science Dimensions' Using 'DSL' API
dinaBayesian Estimation of DINA Model
dinamicA Method to Analyze Recurrent DNA Copy Number Aberrations in Tumors
dineRDifferential Network Estimation in R
dineqDecomposition of (Income) Inequality
dintA Toolkit for Year-Quarter, Year-Month and Year-Isoweek Dates
dipmDepth Importance in Precision Medicine (DIPM) Method
dipropermConduct Direction-Projection-Permutation Tests and Display Plots
dipsausA Dipping Sauce for Data Analysis and Visualizations
diptestHartigan's Dip Test Statistic for Unimodality - Corrected
dipwDebiased Inverse Propensity Score Weighting
directPADirection Analysis for Pathways and Kinases
directlabelsDirect Labels for Multicolor Plots
directotreeCreates an Interactive Tree Structure of a Directory
dirichletprocessBuild Dirichlet Process Objects for Bayesian Modelling
dirmcmcDirectional Metropolis Hastings Algorithm
dirmultEstimation in Dirichlet-Multinomial Distribution
dirtteeDistributional Regression for Time to Event Data
disaggRTwo-Steps Benchmarks for Time Series Disaggregation
disaggregationDisaggregation Modelling
disastr.apiWrapper for the UN OCHA ReliefWeb Disaster Events API
disbayesBayesian Multi-State Modelling of Chronic Disease Burden Data
discAUCLinear and Non-Linear AUC for Discounting Data
discFADiscrete Factor Analysis
discSurvDiscrete Time Survival Analysis
discfrailCox Models for Time-to-Event Data with Nonparametric Discrete Group-Specific Frailties
dischargeFourier Analysis of Discharge Data
disclapDiscrete Laplace Exponential Family
disclapmixDiscrete Laplace Mixture Inference using the EM Algorithm
disclapmix2Mixtures of Discrete Laplace Distributions using Numerical Optimisation
disclosuRText Conversion from Nexis Uni PDFs to R Data Frames
discnormTest for Discretized Normality in Ordinal Data
discordFunctions for Discordant Kinship Modeling
discourseGTAnalyze Group Patterns using Graph Theory in Educational Settings
discoveRExploratory Data Analysis System
discoverableresearchChecks Title, Abstract and Keywords to Optimise Discoverability
discretefitSimulated Goodness-of-Fit Tests for Discrete Distributions
discretizationData Preprocessing, Discretization for Classification
discrimModel Wrappers for Discriminant Analysis
discrtrA Companion Package for the Book "Discrete Choice Analysis with 'R'"
discursiveMeasuring Discursive Sophistication in Open-Ended Survey Responses
disdatData for Comparing Species Distribution Modeling Methods
diseasemappingModelling Spatial Variation in Disease Risk for Areal Data
diseasystoreFeature Stores for the 'diseasy' Framework
disk.frameLarger-than-RAM Disk-Based Data Manipulation Framework
dismoSpecies Distribution Modeling
disordRNon-Ordered Vectors
dispRityMeasuring Disparity
disparityfilterDisparity Filter Algorithm for Weighted Networks
dispeRseSimulation of Demic Diffusion with Environmental Constraints
dispmodModelling Dispersion in GLM
disposablesCreate Disposable R Packages for Testing
dispositionEffectAnalysis of Disposition Effect on Financial Portfolios
disprofasNon-Parametric Dissolution Profile Analysis
disproseDiscriminating Probes Selection
dissCqNMultiple Assemblage Dissimilarity for Orders q = 0-N
disseverSpatial Downscaling using the Dissever Algorithm
distTailsA Collection of Full Defined Distribution Tails
distancesTools for Distance Metrics
distancetoCalculate Distance to Features
distantiaAssessing Dissimilarity Between Multivariate Time Series
distcompComputations over Distributed Data without Aggregation
distcreteDiscrete Distribution Approximations
distdichoRDistributional Method for the Dichotomisation of Continuous Outcomes
distfree.crDistribution-Free Confidence Region
distill'R Markdown' Format for Scientific and Technical Writing
distillMLModel Distillation and Interpretability Methods for Machine Learning Models
distilleryMethod Functions for Confidence Intervals and to Distill Information from an Object
distinctivenessDistinctiveness Centrality
distoUnified Interface to Distance, Dissimilarity, Similarity Matrices
distopsUsual Operations for Distance Matrices in R
distoryDistance Between Phylogenetic Histories
distrObject Oriented Implementation of Distributions
distrDocDocumentation for 'distr' Family of R Packages
distrEllipseS4 Classes for Elliptically Contoured Distributions
distrExExtensions of Package 'distr'
distrModObject Oriented Implementation of Probability Models
distrRmetricsDistribution Classes for Distributions from Rmetrics
distrSimSimulation Classes Based on Package 'distr'
distrTEstEstimation and Testing Classes Based on Package 'distr'
distrTeachExtensions of Package 'distr' for Teaching Stochastics/Statistics in Secondary School
distreg.visFramework for the Visualization of Distributional Regression Models
distributionalVectorised Probability Distributions
distributions3Probability Distributions as S3 Objects
distributionsrdDistribution Fitting and Evaluation
distroLinux Distribution Properties
distromDistributed Multinomial Regression
distrrEstimate and Manage Empirical Distributions
disttoolsDistance Object Manipulation Tools
dittoVizUser Friendly Data Visualization
dittodbA Test Environment for Database Requests
divReport on Diversity and Inclusion in a Corporate Setting
divDynDiversity Dynamics using Fossil Sampling Data
diveMoveDive Analysis and Calibration
diveREasily Install and Load Interactive Data Visualization Tools
divergeEvolutionary Trait Divergence Between Sister Species and Other Paired Lineages
diverseDiversity Measures for Complex Systems
diversitreeComparative 'Phylogenetic' Analyses of Diversification
diversityForestInnovative Complex Split Procedures in Random Forests Through Candidate Split Sampling
divestGet Images Out of DICOM Format Quickly
divoTools for Analysis of Diversity and Similarity in Biological Systems
divrasterDiversity Metrics Calculations for Rasterized Data
divsegCalculate Diversity and Segregation Indices
divvySpatial Subsampling of Biodiversity Occurrence Data
dixonNearest Neighbour Contingency Table Analysis
dixonTestDixon's Ratio Test for Outlier Detection
diyarRecord Linkage and Epidemiological Case Definitions in 'R'
dkanrClient for the 'DKAN' API
dlbayesUse Dirichlet Laplace Prior to Solve Linear Regression Problem and Do Variable Selection
dlibAllow Access to the 'Dlib' C++ Library
dlimDistributed Lag Interaction Model
dlmBayesian and Likelihood Analysis of Dynamic Linear Models
dlnmDistributed Lag Non-Linear Models
dlookrTools for Data Diagnosis, Exploration, Transformation
dlrDownload and Cache Files Safely
dlsemDistributed-Lag Linear Structural Equation Models
dlstatsDownload Stats of R Packages
dmRelational Data Models
dmaDynamic Model Averaging
dmaiDivisia Monetary Aggregates Index
dmbcModel Based Clustering of Binary Dissimilarity Measurements
dmetatoolsComputational Tools for Meta-Analysis of Diagnostic Accuracy Test
dmlDistance Metric Learning in R
dmlalgDouble Machine Learning Algorithms
dmmDyadic Mixed Model for Pedigree Data
dmri.trackingDiST - Diffusion Direction Smoothing and Tracking
dmtoolsTools for Clinical Data Management
dmutateMutate Data Frames with Random Variates
dndRDungeons & Dragons Functions for Players and Dungeon Masters
dngDistributions and Gradients
dnnDeep Neural Network Tools for Probability and Statistic Models
dnrSimulate Dynamic Networks using Exponential Random Graph Models (ERGM) Family
doData Operator
doByGroupwise Statistics, LSmeans, Linear Estimates, Utilities
doFutureUse Foreach to Parallelize via the Future Framework
doMCForeach Parallel Adaptor for 'parallel'
doMPIForeach Parallel Adaptor for the Rmpi Package
doParallelForeach Parallel Adaptor for the 'parallel' Package
doRNGGeneric Reproducible Parallel Backend for 'foreach' Loops
doRedis'Foreach' Parallel Adapter Using the 'Redis' Database
doSNOWForeach Parallel Adaptor for the 'snow' Package
dobinDimension Reduction for Outlier Detection
dobsonData from the GLM Book by Dobson and Barnett
doc2concreteMeasuring Concreteness in Natural Language
doc2vecDistributed Representations of Sentences, Documents and Topics
dockerfilerEasy Dockerfile Creation from R
docknitrUse Docker Images to Process Rmarkdown Blocks
doconvDocument Conversion to 'PDF' or 'PNG'
docoptCommand-Line Interface Specification Language
docopulaeOptimal Designs for Copula Models
docoreUtility Functions for Scientific Coding
docstringProvides Docstring Capabilities to R Functions
doctestGenerate Tests from Examples Using 'roxygen' and 'testthat'
docuSignrConnect to 'DocuSign' API
documentRun 'roxygen2' on (Chunks of) Single Code Files
documenterDocuments Files
docxtractrExtract Data Tables and Comments from 'Microsoft' 'Word' Documents
dodgrDistances on Directed Graphs
doebioresearchAnalysis of Design of Experiments for Biological Research
doexThe One-Way Heteroscedastic ANOVA Tests
dogesrWork with the Doges/Dogaresse Dataset
dominanceanalysisDominance Analysis
dominoR Console Bindings for the 'Domino Command-Line Client'
domirTools to Support Relative Importance Analysis
donutNearest Neighbour Search with Variables on a Torus
donutskConstruct Advanced Donut Charts
doofaDesigns for Order-of-Addition Experiments
doolkitExploration of Dental Surface Topography
doremiDynamics of Return to Equilibrium During Multiple Inputs
doseSensConduct Sensitivity Analysis with Continuous Exposures and Binary Outcomes
dosearchCausal Effect Identification from Multiple Incomplete Data Sources
dosedesignRInteractive Designing of Dose Finding Studies
doseminerExtract Drug Dosages from Free-Text Prescriptions
dosresmetaMultivariate Dose-Response Meta-Analysis
dostatsCompute Statistics Helper Functions
dotCall64Enhanced Foreign Function Interface Supporting Long Vectors
dotenvLoad Environment Variables from '.env'
dotgenGene-Set Analysis via Decorrelation by Orthogonal Transformation
dotprofileCreate and Manage Configuration Profiles
dotsDot Density Maps
dotsViolinDot Plots Mimicking Violin Plots
doubcensSurvivor Function Estimation for Doubly Interval-Censored Failure Time Data
doublInEstimate Incubation or Latency Time using Doubly Interval Censored Observations
double.truncationAnalysis of Doubly-Truncated Data
doubtEnable Operators Containing the '?' Symbol
doudpackageCreate Elegant Table 1 in HTML for Bio-Statistics
downlitSyntax Highlighting and Automatic Linking
downloaderDownload Files over HTTP and HTTPS
downloadthisImplement Download Buttons in 'rmarkdown'
downscaleDownscaling Species Occupancy
downsizeA Tool to Downsize Large Analysis Projects for Testing
dowserB Cell Receptor Phylogenetics Toolkit
dparserPort of 'Dparser' Package
dpccDynamic Programming for Convex Clustering
dplRDendrochronology Program Library in R
dplyrA Grammar of Data Manipulation
dplyrAssistRStudio Addin for Teaching and Learning Data Manipulation Using 'dplyr'
dpmDynamic Panel Models Fit with Maximum Likelihood
dpmrData Package Manager for R
dppmixDeterminantal Point Process Mixture Models
dpropComputation of Some Important Distributional Properties
dpsegPiecewise Linear Segmentation by Dynamic Programming
dqrngFast Pseudo Random Number Generators
drMethods for Dimension Reduction for Regression
dr4plDose Response Data Analysis using the 4 Parameter Logistic (4pl) Model
dracorDecode Draco Format 3D Mesh Data
dragonkingStatistical Tools to Identify Dragon Kings
dragracerData Sets for RuPaul's Drag Race
dragulaRDrag and Drop Elements in 'Shiny' using 'Dragula Javascript Library'
drakeA Pipeline Toolkit for Reproducible Computation at Scale
drapeDoubly Robust Average Partial Effects
drat'Drat' R Archive Template
drawWrapper Functions for Producing Graphics
drawerAn Interactive HTML Image Editing Tool
drawsampleDraw Samples with the Desired Properties from a Data Set
drcAnalysis of Dose-Response Curves
drcSeedGermUtilities for Data Analyses in Seed Germination/Emergence Assays
drcarlateImproving Estimation Efficiency in CAR with Imperfect Compliance
drclustSimultaneous Clustering and (or) Dimensionality Reduction
drcteStatistical Approaches for Time-to-Event Data in Agriculture
drdaDose-Response Data Analysis
dreamerDose Response Models for Bayesian Model Averaging
dreamerrError Handling Made Easy
drfDistributional Random Forests
drgeeDoubly Robust Generalized Estimating Equations
drhurLearning R with Dr. Hu
drifterConcept Drift and Concept Shift Detection for Predictive Models
drimmREstimation, Simulation and Reliability of Drifting Markov Models
driveRPrioritizing Cancer Driver Genes Using Genomics Data
drollAnalyze Roll Distributions
dropoutHandling Incomplete Responses in Survey Data Analysis
droptestSimulates LOX Drop Testing
drordDoubly-Robust Estimators for Ordinal Outcomes
droughtStatistical Modeling and Assessment of Drought
drpopEfficient and Doubly Robust Population Size Estimation
drtmleDoubly-Robust Nonparametric Estimation and Inference
drugDemandDrug Demand Forecasting
drugdevelopRUtility-Based Optimal Phase II/III Drug Development Planning
drugpreprPrepare Electronic Prescription Record Data to Estimate Drug Exposure
drumrTurn R into a Drum Machine
dsDescriptive Statistics
ds4psyData Science for Psychologists
dsaSeasonal Adjustment of Daily Time Series
dsampleDiscretization-Based Direct Random Sample Generation
dsbNormalize & Denoise Droplet Single Cell Protein Data (CITE-Seq)
dscoreD-Score for Child Development
dsdpDensity Estimation with Semidefinite Programming
dsemFit Dynamic Structural Equation Models
dsimsDistance Sampling Simulations
dslabsData Science Labs
dsliceDynamic Slicing
dsmDensity Surface Modelling of Distance Sampling Data
dsmSearchDSM and LiDAR downloader
dsmiscData Science Box of Pandora Miscellaneous
dsmmREstimation and Simulation of Drifting Semi-Markov Models
dsosDataset Shift with Outlier Scores
dsrTestTests and Confidence Intervals on Directly Standardized Rates for Several Methods
dssdDistance Sampling Survey Design
dstUsing the Theory of Belief Functions
dstabledistThe Discrete Stable Distribution Functions
dstatConditional Sensitivity Analysis for Matched Observational Studies
dstat2x2xkDemonstrated Insensitivity to Bias in 2x2xK Contingency Tables
dtCombStatistical Combination of Diagnostic Tests
dtangleCell Type Deconvolution from Gene Expressions
dtgiwDiscrete Transmuted Generalized Inverse Weibull Distribution
dtiAnalysis of Diffusion Weighted Imaging (DWI) Data
dtpDynamic Panel Threshold Model
dtpcrmDose Transition Pathways for Continual Reassessment Method
dtplyrData Table Back-End for 'dplyr'
dtrSurvDynamic Treatment Regimes for Survival Analysis
dtrackrTrack your Data Pipelines
dttDiscrete Trigonometric Transforms
dttr2Manipulate Date, POSIXct and hms Vectors
dtts'data.table' Time-Series
dtwDynamic Time Warping Algorithms
dtwclustTime Series Clustering Along with Optimizations for the Dynamic Time Warping Distance
dualAutomatic Differentiation with Dual Numbers
dualScaleDual Scaling Analysis of Data
dualtreesDecimated and Undecimated 2D Complex Dual-Tree Wavelet Transform
duawranglrSecurely Wrangle Dataset According to Data Usage Agreement
dubUnpacking Assignment for Lists via Pattern Matching
duckdbDBI Package for the DuckDB Database Management System
duckdbfsHigh Performance Remote File System, Database and 'Geospatial' Access Using 'duckdb'
duckduckrSimple Client for the DuckDuckGo Instant Answer API
duckplyrA 'DuckDB'-Backed Version of 'dplyr'
dukeCreating a Color-Blind Friendly Duke Color Package
dumbbellDisplaying Changes Between Two Points Using Dumbbell Plots
dummyAutomatic Creation of Dummies with Support for Predictive Modeling
dundermifflinThe Office Quotes on-Demand
dunlinPreprocessing Tools for Clinical Trial Data
dunn.testDunn's Test of Multiple Comparisons Using Rank Sums
dupNodesComputes DNSLbetweenness, a Betweenness Measure that Includes Self-Loops
dupiRBayesian Inference from Count Data using Discrete Uniform Priors
dupreeIdentify Duplicated R Code in a Project
dvirDisaster Victim Identification
dvmiscConvenience Functions, Moving Window Statistics, and Graphics
dvqccDynamic VAR - Based Control Charts for Batch Process Monitoring
dwctaxonEdit and Validate Darwin Core Taxon Data
dwdradarRead Binary Radar Files from 'DWD' (German Weather Service)
dwlmDoubly Weighted Linear Model
dwpDensity-Weighted Proportion
dySEMDyadic Structural Equation Modeling
dyadsDyadic Network Analysis
dydeaDetection of Chaotic and Regular Intervals in the Data
dygraphsInterface to 'Dygraphs' Interactive Time Series Charting Library
dymoDynamic Mode Decomposition for Multivariate Time Feature Prediction
dynTime Series Regression
dyn.logDynamic Logging for R Inspired by Configuration Driven Development
dynBiplotGUIFull Interactive GUI for Dynamic Biplot in R
dynConfiRDynamic Models for Confidence and Response Time Distributions
dynCorrDynamic Correlation Package
dynRBDynamic Range Boxes
dynaSpecDynamic Spectrogram Visualizations
dynaTreeDynamic Trees for Learning and Design
dynamAedesA Unified Mechanistic Model for the Population Dynamics of Invasive Aedes Mosquitoes
dynamacDynamic Simulation and Testing for Single-Equation ARDL Models
dynamicDFI Cutoffs for Latent Variable Models
dynamicSDMSpecies Distribution and Abundance Modelling at High Spatio-Temporal Resolution
dynamicTreeCutMethods for Detection of Clusters in Hierarchical Clustering Dendrograms
dynamiteBayesian Modeling and Causal Inference for Multivariate Longitudinal Data
dynatopAn Implementation of Dynamic TOPMODEL Hydrological Model in R
dynatopGISAlgorithms for Helping Build Dynamic TOPMODEL Implementations from Spatial Data
dyncompComplexity of Short and Coarse-Grained Time Series
dyndimredDimensionality Reduction Methods in a Common Format
dynetNLAResistanceResisting Neighbor Label Attack in a Dynamic Network
dyngenA Multi-Modal Simulator for Spearheading Single-Cell Omics Analyses
dynlmDynamic Linear Regression
dynmixEstimation of Dynamic Finite Mixtures
dynpanelDynamic Panel Data Models
dynparamCreating Meta-Information for Parameters
dynpredCompanion Package to "Dynamic Prediction in Clinical Survival Analysis"
dynprogDynamic Programming Domain-Specific Language
dynrDynamic Models with Regime-Switching
dynsimDynamic Simulations of Autoregressive Relationships
dynsurvDynamic Models for Survival Data
dyntaperDynamic Stem Profile Models, AKA Tree Taper Equations
dynutilsCommon Functionality for the 'dynverse' Packages
dynwrapRepresenting and Inferring Single-Cell Trajectories
E4toolsManagement and Processing Tools for Data Produced by the Empatica E4
EATMEExponentially Weighted Moving Average with Adjustments to Measurement Error
EAinferenceEstimator Augmentation and Simulation-Based Inference
EBASEEstuarine Bayesian Single-Station Estimation Method for Ecosystem Metabolism
EBCHSAn Empirical Bayes Method for Chi-Squared Data
EBENEmpirical Bayesian Elastic Net
EBMAforecastEstimate Ensemble Bayesian Model Averaging Forecasts using Gibbs Sampling or EM-Algorithms
EBPRSDerive Polygenic Risk Score Based on Emprical Bayes Theory
EBglmnetEmpirical Bayesian Lasso and Elastic Net Methods for Generalized Linear Models
EBrankEmpirical Bayes Ranking
ECGofTestDxA Goodness-of-Fit Test for Elliptical Distributions with Diagnostic Capabilities
ECLRMCEnsemble Correlation-Based Low-Rank Matrix Completion
ECOSolveREmbedded Conic Solver in R
ECOTOXrDownload and Extract Data from US EPA's ECOTOX Database
ECTSVRCointegration Based Support Vector Regression Model
ECTTDNNCointegration Based Timedelay Neural Network Model
ECharts2ShinyEmbedding Interactive Charts Generated with ECharts Library into Shiny Applications
ECoLComplexity Measures for Supervised Problems
EDAEnergy Decomposition Analysis
EDCimportImport Data from EDC Software
EDFtestGoodness of Fit Based on Empirical Distribution Function
EDISONNetwork Reconstruction and Changepoint Detection
EDIutilsAn API Client for the Environmental Data Initiative Repository
EDMeasureEnergy-Based Dependence Measures
EDNE.EQImplements the EDNE-Test for Equivalence
EDOIFEmpirical Distribution Ordering Inference Framework (EDOIF)
EDOtransEuclidean Distance-Optimized Data Transformation
EEAaqHandle Air Quality Data from the European Environment Agency Data Portal
EEMRead and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data
EEMDSVREnsemble Empirical Mode Decomposition and Its Variant Based Support Vector Regression Model
EEMDelmEnsemble Empirical Mode Decomposition and Its Variant Based ELM Model
EEMDlstmEEMD Based LSTM Model for Time Series Forecasting
EESPCAEigenvectors from Eigenvalues Sparse Principal Component Analysis (EESPCA)
EFA.MRFADimensionality Assessment Using Minimum Rank Factor Analysis
EFA.di