- Contents of the standard library
- Contents of the CRAN library

base | The R Base Package |

compiler | The R Compiler Package |

datasets | The R Datasets Package |

grDevices | The R Graphics Devices and Support for Colours and Fonts |

graphics | The R Graphics Package |

grid | The Grid Graphics Package |

methods | Formal Methods and Classes |

parallel | Support for Parallel computation in R |

splines | Regression Spline Functions and Classes |

stats | The R Stats Package |

stats4 | Statistical Functions using S4 Classes |

tcltk | Tcl/Tk Interface |

tools | Tools for Package Development |

utils | The R Utils Package |

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A3 | Accurate, Adaptable, and Accessible Error Metrics for Predictive Models |

AATtools | Reliability and Scoring Routines for the Approach-Avoidance Task |

ABACUS | Apps Based Activities for Communicating and Understanding Statistics |

ABC.RAP | Array Based CpG Region Analysis Pipeline |

ABCanalysis | Computed ABC Analysis |

ABCoptim | Implementation of Artificial Bee Colony (ABC) Optimization |

ABCp2 | Approximate Bayesian Computational Model for Estimating P2 |

ABHgenotypeR | Easy Visualization of ABH Genotypes |

ABPS | The Abnormal Blood Profile Score to Detect Blood Doping |

ABSurvTDC | Survival Analysis using Time Dependent Covariate for Animal Breeding |

ACA | Abrupt Change-Point or Aberration Detection in Point Series |

ACDC | Analysis of Congruent Diversification Classes |

ACDm | Tools for Autoregressive Conditional Duration Models |

ACEP | Analisis Computacional de Eventos de Protesta |

ACEsearch | 'ACE' Search Engine API |

ACEsimFit | ACE Kin Pair Data Simulations and Model Fitting |

ACEt | Estimating Dynamic Heritability and Twin Model Comparison |

ACNE | Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization |

ACSWR | A Companion Package for the Book "A Course in Statistics with R" |

ACTCD | Asymptotic Classification Theory for Cognitive Diagnosis |

ACV | Optimal Out-of-Sample Forecast Evaluation and Testing under Stationarity |

ACWR | Acute Chronic Workload Ratio Calculation |

ADAPTS | Automated Deconvolution Augmentation of Profiles for Tissue Specific Cells |

ADCT | Adaptive Design in Clinical Trials |

ADDT | Analysis of Accelerated Destructive Degradation Test Data |

ADER | Data Analysis in Ecology |

ADGofTest | Anderson-Darling GoF test |

ADMM | Algorithms using Alternating Direction Method of Multipliers |

ADMMnet | Regularized Model with Selecting the Number of Non-Zeros |

ADMMsigma | Penalized Precision Matrix Estimation via ADMM |

ADMUR | Ancient Demographic Modelling Using Radiocarbon |

ADP | Adoption Probability, Triers and Users Rate of a New Product |

ADPF | Use Least Squares Polynomial Regression and Statistical Testing to Improve Savitzky-Golay |

ADPclust | Fast Clustering Using Adaptive Density Peak Detection |

ADVICE | Automatic Direct Variable Selection via Interrupted Coefficient Estimation |

AEDForecasting | Change Point Analysis in ARIMA Forecasting |

AEP | Statistical Modelling for Asymmetric Exponential Power Distribution |

AER | Applied Econometrics with R |

AEenrich | Adverse Event Enrichment Tests |

AF | Model-Based Estimation of Confounder-Adjusted Attributable Fractions |

AFM | Atomic Force Microscope Image Analysis |

AFR | Toolkit for Regression Analysis of Kazakhstan Banking Sector Data |

AFheritability | The Attributable Fraction (AF) Described as a Function of Disease Heritability, Prevalence and Intervention Specific Factors |

AGD | Analysis of Growth Data |

AGHmatrix | Relationship Matrices for Diploid and Autopolyploid Species |

AGPRIS | AGricultural PRoductivity in Space |

AGSDest | Estimation in Adaptive Group Sequential Trials |

AHM | Additive Heredity Model: Method for the Mixture-of-Mixtures Experiments |

AHMbook | Functions and Data for the Book 'Applied Hierarchical Modeling in Ecology' Vols 1 and 2 |

AHPWR | Compute Analytic Hierarchy Process |

AHPhybrid | AHP Hybrid Method |

AHSurv | Flexible Parametric Accelerated Hazards Models |

AICcmodavg | Model Selection and Multimodel Inference Based on (Q)AIC(c) |

AID | Box-Cox Power Transformation |

AIG | Automatic Item Generator |

AIPW | Augmented Inverse Probability Weighting |

ALDqr | Quantile Regression Using Asymmetric Laplace Distribution |

ALEPlot | Accumulated Local Effects (ALE) Plots and Partial Dependence (PD) Plots |

ALS | Multivariate Curve Resolution Alternating Least Squares (MCR-ALS) |

ALSCPC | Accelerated line search algorithm for simultaneous orthogonal transformation of several positive definite symmetric matrices to nearly diagonal form. |

ALSM | Companion to Applied Linear Statistical Models |

ALTopt | Optimal Experimental Designs for Accelerated Life Testing |

ALUES | Agricultural Land Use Evaluation System |

ALassoSurvIC | Adaptive Lasso for the Cox Regression with Interval Censored and Possibly Left Truncated Data |

AMAPVox | LiDAR Data Voxelisation |

AMCP | A Model Comparison Perspective |

AMCTestmakeR | Generate LaTeX Code for Auto-Multiple-Choice (AMC) |

AMModels | Adaptive Management Model Manager |

AMPLE | Shiny Apps to Support Capacity Building on Harvest Control Rules |

AMR | Antimicrobial Resistance Data Analysis |

ANN2 | Artificial Neural Networks for Anomaly Detection |

ANOM | Analysis of Means |

ANOVAIREVA | Interactive Document for Working with Analysis of Variance |

ANOVAShiny | Interactive Document for Working with Analysis of Variance |

ANOVAShiny2 | Interactive Document for Working with Analysis of Variance |

ANOVAreplication | Test ANOVA Replications by Means of the Prior Predictive p-Value |

ANTs | Animal Network Toolkit Software |

AOV1R | Inference in the Balanced One-Way ANOVA Model with Random Factor |

APCI | A New Age-Period-Cohort Model for Describing and Investigating Inter-Cohort Differences and Life Course Dynamics |

APCanalysis | Analysis of Unreplicated Orthogonal Experiments using All Possible Comparisons |

APCtools | Routines for Descriptive and Model-Based APC Analysis |

APFr | Multiple Testing Approach using Average Power Function (APF) and Bayes FDR Robust Estimation |

APIS | Auto-Adaptive Parentage Inference Software Tolerant to Missing Parents |

APML0 | Augmented and Penalized Minimization Method L0 |

APPEstimation | Adjusted Prediction Model Performance Estimation |

APfun | Geo-Processing Helper Functions |

APtools | Average Positive Predictive Values (AP) for Binary Outcomes and Censored Event Times |

AQEval | Air Quality Evaluation |

AQLSchemes | Retrieving Acceptance Sampling Schemes |

AQuadtree | Confidentiality of Spatial Point Data |

AR | Another Look at the Acceptance-Rejection Method |

ARCensReg | Fitting Univariate Censored Linear Regression Model with Autoregressive Errors |

ARCokrig | Autoregressive Cokriging Models for Multifidelity Codes |

ARDL | ARDL, ECM and Bounds-Test for Cointegration |

ARHT | Adaptable Regularized Hotelling's T^2 Test for High-Dimensional Data |

ARIMAANN | Time Series Forecasting using ARIMA-ANN Hybrid Model |

ARIbrain | All-Resolution Inference |

AROC | Covariate-Adjusted Receiver Operating Characteristic Curve Inference |

ARPALData | Retrieving, Managing and Analysing Air Quality and Weather Data for Lombardy (Italy) using ARPA Lombardia Open Database |

ARPobservation | Tools for Simulating Direct Behavioral Observation Recording Procedures Based on Alternating Renewal Processes |

ART | Aligned Rank Transform for Nonparametric Factorial Analysis |

ARTP2 | Pathway and Gene-Level Association Test |

ARTofR | To Insert Title, Divider, and Block of Comments |

ARTool | Aligned Rank Transform |

ARpLMEC | Censored Mixed-Effects Models with Different Correlation Structures |

ASGS.foyer | Interface to the Australian Statistical Geography Standard |

ASIP | Automated Satellite Image Processing |

ASRgenomics | 'ASReml-R' Genomics Tools |

ASSA | Applied Singular Spectrum Analysis (ASSA) |

ASSISTant | Adaptive Subgroup Selection in Group Sequential Trials |

AST | Age-Spatial-Temporal Model |

ASV | Stochastic Volatility Models with or without Leverage |

ATAforecasting | Automatic Time Series Analysis and Forecasting using the Ata Method |

ATNr | Run Allometric Trophic Networks Models |

ATR | Alternative Tree Representation |

ATbounds | Bounding Treatment Effects by Limited Information Pooling |

AUC | Threshold Independent Performance Measures for Probabilistic Classifiers |

AUtests | Approximate Unconditional and Permutation Tests |

AWR | 'AWS' Java 'SDK' for R |

AWR.Athena | 'AWS' Athena 'DBI' Wrapper |

AWR.KMS | A Simple Client to the 'AWS' Key Management Service |

AWR.Kinesis | Amazon 'Kinesis' Consumer Application for Stream Processing |

AZIAD | Analyzing Zero-Inflated and Zero-Altered Data |

Ac3net | Inferring Directional Conservative Causal Core Gene Networks |

AcceptanceSampling | Creation and Evaluation of Acceptance Sampling Plans |

AcousticNDLCodeR | Coding Sound Files for Use with NDL |

AcrossTic | A Cost-Minimal Regular Spanning Subgraph with TreeClust |

ActCR | Extract Circadian Rhythms Metrics from Actigraphy Data |

ActFrag | Activity Fragmentation Metrics Extracted from Minute Level Activity Data |

ActiSleep | Sleep Duration Estimate Algorithm |

ActiveDriver | Finding Cancer Driver Proteins with Enriched Mutations in Post-Translational Modification Sites |

ActiveDriverWGS | A Driver Discovery Tool for Cancer Whole Genomes |

ActivePathways | Integrative Pathway Enrichment Analysis of Multivariate Omics Data |

ActivityIndex | Activity Index Calculation using Raw 'Accelerometry' Data |

AcuityView | A Package for Displaying Visual Scenes as They May Appear to an Animal with Lower Acuity |

AdMit | Adaptive Mixture of Student-t Distributions |

AdaSampling | Adaptive Sampling for Positive Unlabeled and Label Noise Learning |

AdapSamp | Adaptive Sampling Algorithms |

AdaptGauss | Gaussian Mixture Models (GMM) |

AdaptiveSparsity | Adaptive Sparsity Models |

AdequacyModel | Adequacy of Probabilistic Models and General Purpose Optimization |

AdhereR | Adherence to Medications |

AdhereRViz | Adherence to Medications |

AdvBinomApps | Upper Clopper-Pearson Confidence Limits for Burn-in Studies under Additional Available Information |

AdvDif4 | Solving 1D Advection Bi-Flux Diffusion Equation |

AdvancedBasketballStats | Advanced Basketball Statistics |

AeRobiology | A Computational Tool for Aerobiological Data |

AeroSampleR | Estimate Aerosol Particle Collection Through Sample Lines |

AggregateR | Aggregate Numeric, Date and Categorical Variables |

AgreementInterval | Agreement Interval of Two Measurement Methods |

AgroR | Experimental Statistics and Graphics for Agricultural Sciences |

AgroReg | Regression Analysis Linear and Nonlinear for Agriculture |

AgroTech | Data Analysis of Pesticide Application Technology |

AhoCorasickTrie | Fast Searching for Multiple Keywords in Multiple Texts |

AirMonitor | Air Quality Data Analysis |

Ake | Associated Kernel Estimations |

AlgDesign | Algorithmic Experimental Design |

AlgebraicHaploPackage | Haplotype Two Snips Out of a Paired Group of Patients |

AlleleRetain | Allele Retention, Inbreeding, and Demography |

AlleleShift | Predict and Visualize Population-Level Changes in Allele Frequencies in Response to Climate Change |

AllelicSeries | Allelic Series Test |

Allspice | RNA-Seq Profile Classifier |

AlphaHull3D | Alpha Hull Computation |

AlphaPart | Partition/Decomposition of Breeding Values by Paths of Information |

AlphaSimR | Breeding Program Simulations |

Amelia | A Program for Missing Data |

AmericanCallOpt | This package includes pricing function for selected American call options with underlying assets that generate payouts. |

AmesHousing | The Ames Iowa Housing Data |

AmigaFFH | Commodore Amiga File Format Handler |

AmmoniaConcentration | Un-Ionized Ammonia Concentration |

AmoudSurv | Tractable Parametric Odds-Based Regression Models |

AmpGram | Prediction of Antimicrobial Peptides |

AmpliconDuo | Statistical Analysis of Amplicon Data of the Same Sample to Identify Artefacts |

AmyloGram | Prediction of Amyloid Proteins |

AnaCoDa | Analysis of Codon Data under Stationarity using a Bayesian Framework |

Anaconda | Targeted Differential and Global Enrichment Analysis of Taxonomic Rank by Shared Asvs |

AncestryMapper | Assigning Ancestry Based on Population References |

AnchorRegression | Perform AnchorRegression |

Andromeda | Asynchronous Disk-Based Representation of Massive Data |

AnglerCreelSurveySimulation | Simulate a Bus Route Creel Survey of Anglers |

AnimalHabitatNetwork | Networks Characterising the Physical Configurations of Animal Habitats |

AnnoProbe | Annotate the Gene Symbols for Probes in Expression Array |

AnnotationBustR | Extract Subsequences from GenBank Annotations |

AnnuityRIR | Annuity Random Interest Rates |

AntAngioCOOL | Anti-Angiogenic Peptide Prediction |

AntMAN | Anthology of Mixture Analysis Tools |

AnthropMMD | An R Package for Smith's Mean Measure of Divergence (MMD) |

Anthropometry | Statistical Methods for Anthropometric Data |

AntibodyTiters | Antibody Titer Analysis of Vaccinated Patients |

AnxietySleep | Sleep Quality and Anxiety in Confinement |

Aoptbdtvc | A-Optimal Block Designs for Comparing Test Treatments with Controls |

AovBay | Classic, Nonparametric and Bayesian One-Way Analysis of Variance Panel |

ApacheLogProcessor | Process the Apache Web Server Log Files |

AppliedPredictiveModeling | Functions and Data Sets for 'Applied Predictive Modeling' |

AquaBPsim | Aquaculture Breeding Program Simulation |

AquaEnv | Integrated Development Toolbox for Aquatic Chemical Model Generation |

ArArRedux | Rigorous Data Reduction and Error Propagation of Ar40 / Ar39 Data |

ArCo | Artificial Counterfactual Package |

ArDec | Time Series Autoregressive-Based Decomposition |

ArchaeoChron | Bayesian Modeling of Archaeological Chronologies |

ArchaeoPhases | Post-Processing of the Markov Chain Simulated by 'ChronoModel', 'Oxcal' or 'BCal' |

ArchaeoPhases.dataset | Data Sets for 'ArchaeoPhases' Vignettes |

Arothron | Geometric Morphometric Methods and Virtual Anthropology Tools |

AsioHeaders | 'Asio' C++ Header Files |

AssetAllocation | Backtesting Simple Asset Allocation Strategies |

AssetCorr | Estimating Asset Correlations from Default Data |

AssetPricing | Optimal Pricing of Assets with Fixed Expiry Date |

AssocAFC | Allele Frequency Comparison |

AssocTests | Genetic Association Studies |

AsthmaNHANES | Asthma Data Sets from NHANES |

AsyK | Kernel Density Estimation |

AsymmetricSORDs | Asymmetric Second Order Rotatable Designs (AsymmetricSORDs) |

AsynchLong | Regression Analysis of Sparse Asynchronous Longitudinal Data |

AtmChile | Download Air Quality and Meteorological Information of Chile |

AugmenterR | Data Augmentation for Machine Learning on Tabular Data |

AurieLSHGaussian | Creates a Neighbourhood Using Locality Sensitive Hashing for Gaussian Projections |

AustralianPoliticians | Provides Datasets About Australian Politicians |

AutoDeskR | An Interface to the 'AutoDesk' 'API' Platform |

AutoPipe | Automated Transcriptome Classifier Pipeline: Comprehensive Transcriptome Analysis |

AutoScore | An Interpretable Machine Learning-Based Automatic Clinical Score Generator |

AutoStepwiseGLM | Builds Stepwise GLMs via Train and Test Approach |

AutoWeatherIndices | Calculating Weather Indices |

Autoplotprotein | Development of Visualization Tools for Protein Sequence |

AutoregressionMDE | Minimum Distance Estimation in Autoregressive Model |

Autoseed | Retrieve Disease-Related Genes from Public Sources |

AvInertia | Calculate the Inertial Properties of a Flying Bird |

AzureAppInsights | Include Azure Application Insights in Shiny Apps |

AzureAuth | Authentication Services for Azure Active Directory |

AzureCognitive | Interface to Azure Cognitive Services |

AzureContainers | Interface to 'Container Instances', 'Docker Registry' and 'Kubernetes' in 'Azure' |

AzureCosmosR | Interface to the 'Azure Cosmos DB' 'NoSQL' Database Service |

AzureGraph | Simple Interface to 'Microsoft Graph' |

AzureKeyVault | Key and Secret Management in 'Azure' |

AzureKusto | Interface to 'Kusto'/'Azure Data Explorer' |

AzureQstor | Interface to 'Azure Queue Storage' |

AzureRMR | Interface to 'Azure Resource Manager' |

AzureStor | Storage Management in 'Azure' |

AzureTableStor | Interface to the Table Storage Service in 'Azure' |

AzureVM | Virtual Machines in 'Azure' |

AzureVMmetadata | Interface to Azure Virtual Machine Instance Metadata |

AzureVision | Interface to Azure Computer Vision Services |

aIc | Testing for Compositional Pathologies in Datasets |

aLFQ | Estimating Absolute Protein Quantities from Label-Free LC-MS/MS Proteomics Data |

aMNLFA | Automated Moderated Nonlinear Factor Analysis Using 'M-plus' |

aPCoA | Covariate Adjusted PCoA Plot |

aRchi | Quantitative Structural Model ('QSM') Treatment for Tree Architecture |

aRpsDCA | Arps Decline Curve Analysis in R |

aRtsy | Generative Art with 'ggplot2' |

aRxiv | Interface to the arXiv API |

aSPC | An Adaptive Sum of Powered Correlation Test (aSPC) for Global Association Between Two Random Vectors |

aSPU | Adaptive Sum of Powered Score Test |

aTSA | Alternative Time Series Analysis |

aVirtualTwins | Adaptation of Virtual Twins Method from Jared Foster |

abbreviate | Readable String Abbreviation |

abbyyR | Access to Abbyy Optical Character Recognition (OCR) API |

abc | Tools for Approximate Bayesian Computation (ABC) |

abc.data | Data Only: Tools for Approximate Bayesian Computation (ABC) |

abcADM | Fit Accumulated Damage Models and Estimate Reliability using ABC |

abclass | Angle-Based Large-Margin Classifiers |

abcrf | Approximate Bayesian Computation via Random Forests |

abcrlda | Asymptotically Bias-Corrected Regularized Linear Discriminant Analysis |

abctools | Tools for ABC Analyses |

abd | The Analysis of Biological Data |

abdiv | Alpha and Beta Diversity Measures |

abe | Augmented Backward Elimination |

abess | Fast Best Subset Selection |

abglasso | Adaptive Bayesian Graphical Lasso |

abind | Combine Multidimensional Arrays |

abjData | Databases Used Routinely by the Brazilian Jurimetrics Association |

abjutils | Useful Tools for Jurimetrical Analysis Used by the Brazilian Jurimetrics Association |

abmR | Agent-Based Models in R |

abn | Modelling Multivariate Data with Additive Bayesian Networks |

abnormality | Measure a Subject's Abnormality with Respect to a Reference Population |

abodOutlier | Angle-Based Outlier Detection |

abstr | R Interface to the A/B Street Transport System Simulation Software |

abstractr | An R-Shiny Application for Creating Visual Abstracts |

abtest | Bayesian A/B Testing |

abundant | High-Dimensional Principal Fitted Components and Abundant Regression |

academictwitteR | Access the Twitter Academic Research Product Track V2 API Endpoint |

acc | Exploring Accelerometer Data |

accSDA | Accelerated Sparse Discriminant Analysis |

acca | A Canonical Correlation Analysis with Inferential Guaranties |

accelerometry | Functions for Processing Accelerometer Data |

accelmissing | Missing Value Imputation for Accelerometer Data |

accept | The Acute COPD Exacerbation Prediction Tool (ACCEPT) |

accessibility | Transport Accessibility Measures |

accessrmd | Improving the Accessibility of 'rmarkdown' Documents |

accrual | Bayesian Accrual Prediction |

accrualPlot | Accrual Plots and Predictions for Clinical Trials |

accucor | Natural Abundance Correction of Mass Spectrometer Data |

accumulate | Split-Apply-Combine with Dynamic Groups |

acdcR | Agro-Climatic Data by County |

ace2fastq | ACE File to FASTQ Converter |

aceEditor | The 'Ace' Editor as a HTML Widget |

acebayes | Optimal Bayesian Experimental Design using the ACE Algorithm |

acepack | ACE and AVAS for Selecting Multiple Regression Transformations |

acfMPeriod | Robust Estimation of the ACF from the M-Periodogram |

acid | Analysing Conditional Income Distributions |

acled.api | Automated Retrieval of ACLED Conflict Event Data |

acnr | Annotated Copy-Number Regions |

acopula | Modelling Dependence with Multivariate Archimax (or any User-Defined Continuous) Copulas |

acp | Autoregressive Conditional Poisson |

acroname | Engine for Acronyms and Initialisms |

acrt | Autocorrelation Robust Testing |

acs | Download, Manipulate, and Present American Community Survey and Decennial Data from the US Census |

acss | Algorithmic Complexity for Short Strings |

acss.data | Data Only: Algorithmic Complexity of Short Strings (Computed via Coding Theorem Method) |

act | Aligned Corpus Toolkit |

actel | Acoustic Telemetry Data Analysis |

actilifecounts | Generate Activity Counts from Raw Accelerometer Data |

activAnalyzer | A 'Shiny' App to Analyze Accelerometer-Measured Daily Physical Behavior Data |

activPAL | Advanced Processing and Chart Generation from activPAL Events Files |

activatr | Utilities for Parsing and Plotting Activities |

activegp | Gaussian Process Based Design and Analysis for the Active Subspace Method |

activity | Animal Activity Statistics |

activityGCMM | Circular Mixed Effect Mixture Models of Animal Activity Patterns |

actogrammr | Read in Activity Data and Plot Actograms |

actuar | Actuarial Functions and Heavy Tailed Distributions |

actuaryr | Develop Actuarial Models |

actxps | Create Actuarial Experience Studies: Prepare Data, Summarize Results, and Create Reports |

acumos | 'Acumos' R Interface |

ada | The R Package Ada for Stochastic Boosting |

adaHuber | Adaptive Huber Estimation and Regression |

adabag | Applies Multiclass AdaBoost.M1, SAMME and Bagging |

adace | Estimator of the Adherer Average Causal Effect |

adagio | Discrete and Global Optimization Routines |

adamethods | Archetypoid Algorithms and Anomaly Detection |

adana | Adaptive Nature-Inspired Algorithms for Hybrid Genetic Optimization |

adapt4pv | Adaptive Approaches for Signal Detection in Pharmacovigilance |

adaptDiag | Bayesian Adaptive Designs for Diagnostic Trials |

adaptIVPT | Adaptive Bioequivalence Design for In-Vitro Permeation Tests |

adaptMCMC | Implementation of a Generic Adaptive Monte Carlo Markov Chain Sampler |

adaptMT | Adaptive P-Value Thresholding for Multiple Hypothesis Testing with Side Information |

adaptTest | Adaptive Two-Stage Tests |

adaptalint | Check Code Style Painlessly |

adaptiveGPCA | Adaptive Generalized PCA |

adaptivetau | Tau-Leaping Stochastic Simulation |

adaptr | Adaptive Trial Simulator |

adaptsmoFMRI | Adaptive Smoothing of FMRI Data |

add2ggplot | Add to 'ggplot2' |

addScales | Adds Labeled Center Line and Scale Lines/Regions to Trellis Plots |

addhaz | Binomial and Multinomial Additive Hazard Models |

addhazard | Fit Additive Hazards Models for Survival Analysis |

addinsJoaoMelo | Addins Made of Joao Melo |

addinsOutline | 'RStudio' Addins for Show Outline of a R Markdown/'LaTeX' Project |

addinslist | Discover and Install Useful RStudio Addins |

additive | Bindings for Additive TidyModels |

additiveDEA | Additive Data Envelopment Analysis Models |

additivityTests | Additivity Tests in the Two Way Anova with Single Sub-Class Numbers |

addreg | Additive Regression for Discrete Data |

ade4 | Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences |

ade4TkGUI | 'ade4' Tcl/Tk Graphical User Interface |

adea | Alternate DEA Package |

adegenet | Exploratory Analysis of Genetic and Genomic Data |

adegraphics | An S4 Lattice-Based Package for the Representation of Multivariate Data |

adehabitatHR | Home Range Estimation |

adehabitatHS | Analysis of Habitat Selection by Animals |

adehabitatLT | Analysis of Animal Movements |

adehabitatMA | Tools to Deal with Raster Maps |

adephylo | Exploratory Analyses for the Phylogenetic Comparative Method |

adepro | A 'shiny' Application for the (Audio-)Visualization of Adverse Event Profiles |

adept | Adaptive Empirical Pattern Transformation |

adeptdata | Accelerometry Data Sets |

adespatial | Multivariate Multiscale Spatial Analysis |

adfExplorer | Import from and Export to Amiga Disk Files |

adformR | Get Adform Ads Data via the 'Windsor.ai' API |

adheRenceRX | Assess Medication Adherence from Pharmaceutical Claims Data |

adimpro | Adaptive Smoothing of Digital Images |

adiv | Analysis of Diversity |

adjROC | Computing Sensitivity at a Fix Value of Specificity and Vice Versa as Well as Bootstrap Metrics for ROC Curves |

adjSURVCI | Parameter and Adjusted Probability Estimation for Right-Censored Data |

adjclust | Adjacency-Constrained Clustering of a Block-Diagonal Similarity Matrix |

adjustedCurves | Confounder-Adjusted Survival Curves and Cumulative Incidence Functions |

adjustedcranlogs | Remove Automated and Repeated Downloads from 'RStudio' 'CRAN' Download Logs |

adklakedata | Adirondack Long-Term Lake Data |

adlift | An Adaptive Lifting Scheme Algorithm |

admiral | ADaM in R Asset Library |

admiral.test | Test Data for the 'admiral' Package |

admiraldev | Development Tools for the Admiral Package Family |

admiralonco | Oncology Extension Package for ADaM in 'R' Asset Library |

admisc | Adrian Dusa's Miscellaneous |

admix | Package Admix for Admixture (aka Contamination) Models |

admixr | An Interface for Running 'ADMIXTOOLS' Analyses |

admmDensestSubmatrix | Alternating Direction Method of Multipliers to Solve Dense Dubmatrix Problem |

adnuts | No-U-Turn MCMC Sampling for 'ADMB' Models |

adobeanalyticsr | R Client for 'Adobe Analytics' API 2.0 |

adoptr | Adaptive Optimal Two-Stage Designs in R |

adpss | Design and Analysis of Locally or Globally Efficient Adaptive Designs |

ads | Spatial Point Patterns Analysis |

adsDataHubR | Google Ads Data Hub API Client |

adventr | Interactive R Tutorials to Accompany Field (2016), "An Adventure in Statistics" |

adw | Angular Distance Weighting Interpolation |

adwave | Wavelet Analysis of Genomic Data from Admixed Populations |

adwordsR | Access the 'Google Adwords' API |

afc | Generalized Discrimination Score |

afdx | Diagnosis Performance Using Attributable Fraction |

afex | Analysis of Factorial Experiments |

affinity | Raster Georeferencing, Grid Affine Transforms, Cell Abstraction |

affinitymatrix | Estimation of Affinity Matrix |

affluenceIndex | Affluence (Richness) Indices |

afmToolkit | Functions for Atomic Force Microscope Force-Distance Curves Analysis |

afpt | Tools for Modelling of Animal Flight Performance |

africamonitor | Africa Macroeconomic Monitor Database API |

aftgee | Accelerated Failure Time Model with Generalized Estimating Equations |

afthd | Accelerated Failure Time for High Dimensional Data with MCMC |

afttest | Model Diagnostics for Accelerated Failure Time Models |

ag5Tools | Toolbox for Downloading and Extracting Copernicus AgERA5 Data |

agRee | Various Methods for Measuring Agreement |

ageg | Age Grouping Functions |

ageutils | Collection of Functions for Working with Age Intervals |

aggregation | p-Value Aggregation Methods |

aghq | Adaptive Gauss Hermite Quadrature for Bayesian Inference |

aglm | Accurate Generalized Linear Model |

agop | Aggregation Operators and Preordered Sets |

agriTutorial | Tutorial Analysis of Some Agricultural Experiments |

agricolae | Statistical Procedures for Agricultural Research |

agricolaeplotr | Visualization of Design of Experiments from the 'agricolae' Package |

agridat | Agricultural Datasets |

agrifeature | Agriculture Image Feature |

agriwater | Evapotranspiration and Energy Fluxes Spatial Analysis |

agrmt | Calculate Concentration and Dispersion in Ordered Rating Scales |

agroclim | Climatic Indices for Agriculture |

agrostab | Stability Analysis for Agricultural Research |

agtboost | Adaptive and Automatic Gradient Boosting Computations |

agua | 'tidymodels' Integration with 'h2o' |

agvgd | An R Implementation of the 'Align-GVGD' Method |

ahMLE | Methods for the Additive Hazard Model |

ahaz | Regularization for Semiparametric Additive Hazards Regression |

ahnr | An Implementation of the Artificial Hydrocarbon Networks |

ahpsurvey | Analytic Hierarchy Process for Survey Data |

ahptopsis2n | Hybrid Method for Multiple Criteria Decision-Making (MCDM) |

ahw | Calculates Continuous Time Likelihood Ratio Weights Assuming Multiplicative Intensity Models and Additive Hazard Models |

aiRly | R Wrapper for 'Airly' API |

aiRthermo | Atmospheric Thermodynamics and Visualization |

aibd | Attraction Indian Buffet Distribution |

aidar | Tools for Reading AIDA Files |

aif360 | Help Detect and Mitigate Bias in Machine Learning Models |

aimPlot | Create Pie Like Plot for Completeness |

aimsir17 | Irish Weather Observing Stations Hourly Records for 2017 |

airGR | Suite of GR Hydrological Models for Precipitation-Runoff Modelling |

airGRdatasets | Hydro-Meteorological Catchments Datasets for the 'airGR' Packages |

airGRdatassim | Ensemble-Based Data Assimilation with GR Hydrological Models |

airGRiwrm | 'airGR' Integrated Water Resource Management |

airGRteaching | Teaching Hydrological Modelling with the GR Rainfall-Runoff Models ('Shiny' Interface Included) |

aire.zmvm | Download Mexico City Pollution, Wind, and Temperature Data |

airnow | Retrieve 'AirNow' Air Quality Observations and Forecasts |

airportr | Convenience Tools for Working with Airport Data |

airports | Data on Airports |

airqualityES | Air Quality Measurements in Spain from 2011 to 2018 |

airr | AIRR Data Representation Reference Library |

airt | Evaluation of Algorithm Collections Using Item Response Theory |

aisoph | Additive Isotonic Proportional Hazards Model |

ajv | Another JSON Schema Validator |

akc | Automatic Knowledge Classification |

akiFlagger | Flags Acute Kidney Injury (AKI) |

akima | Interpolation of Irregularly and Regularly Spaced Data |

akmbiclust | Alternating K-Means Biclustering |

akmedoids | Anchored Kmedoids for Longitudinal Data Clustering |

alabama | Constrained Nonlinear Optimization |

alakazam | Immunoglobulin Clonal Lineage and Diversity Analysis |

albatross | PARAFAC Analysis of Fluorescence Excitation-Emission Matrices |

albopictus | Age-Structured Population Dynamics Model |

ald | The Asymmetric Laplace Distribution |

aldvmm | Adjusted Limited Dependent Variable Mixture Models |

alfr | Connectivity to 'Alfresco' Content Management Repositories |

alfred | Downloading Time Series from ALFRED Database for Various Vintages |

algaeClassify | Determine Phytoplankton Functional Groups Based on Functional Traits |

algo | Implement an Address Search Auto Completion Menu on 'Shiny' Text Inputs Using the 'Algolia Places' 'Javascript' Library |

algorithmia | Allows you to Easily Interact with the Algorithmia Platform |

aliases2entrez | Converts Human gene symbols to entrez IDs |

alkahest | Pre-Processing XY Data from Experimental Methods |

allcontributors | Acknowledge all Contributors to a Project |

alleHap | Allele Imputation and Haplotype Reconstruction from Pedigree Databases |

allelematch | Identifying Unique Multilocus Genotypes where Genotyping Error and Missing Data may be Present |

allestimates | Effect Estimates from All Models |

allomr | Removing Allometric Effects of Body Size in Morphological Analysis |

alluvial | Alluvial Diagrams |

almanac | Tools for Working with Recurrence Rules |

alone | Datasets from the Survival TV Series Alone |

alookr | Model Classifier for Binary Classification |

alpaca | Fit GLM's with High-Dimensional k-Way Fixed Effects |

alphaN | Set Alpha Based on Sample Size Using Bayes Factors |

alphaOutlier | Obtain Alpha-Outlier Regions for Well-Known Probability Distributions |

alphabetr | Algorithms for High-Throughput Sequencing of Antigen-Specific T Cells |

alphaci | Confidence Intervals for Coefficient Alpha and Standardized Alpha |

alphahull | Generalization of the Convex Hull of a Sample of Points in the Plane |

alphashape3d | Implementation of the 3D Alpha-Shape for the Reconstruction of 3D Sets from a Point Cloud |

alphastable | Inference for Stable Distribution |

alphavantager | Lightweight R Interface to the Alpha Vantage API |

alqrfe | Adaptive Lasso Quantile Regression with Fixed Effects |

alr4 | Data to Accompany Applied Linear Regression 4th Edition |

altR2 | Alternative Estimators to Adjusted R-Squared |

altadata | API Wrapper for Altadata.io |

altair | Interface to 'Altair' |

altdoc | Use 'Docsify.js', 'Docute', or 'Mkdocs' to Generate a Package Documentation |

altfuelr | Provides an Interface to the NREL Alternate Fuels Locator |

altmeta | Alternative Meta-Analysis Methods |

amanida | Meta-Analysis for Non-Integral Data |

amanpg | Alternating Manifold Proximal Gradient Method for Sparse PCA |

amap | Another Multidimensional Analysis Package |

amapGeocode | An Interface to the 'AutoNavi Maps' API Geocoding Services |

amapro | Thin Wrapper for Mapping Library 'AMap' by 'AutoNavi' |

amazonadsR | Get Amazon Ads Data via the 'Windsor.ai' API |

amazons3R | Get Amazon S3 Data via the 'Windsor.ai' API |

ambhasGW | Ground Water Modelling |

ambient | A Generator of Multidimensional Noise |

ambit | Simulation and Estimation of Ambit Processes |

amelie | Anomaly Detection with Normal Probability Functions |

amen | Additive and Multiplicative Effects Models for Networks and Relational Data |

amerifluxr | Interface to 'AmeriFlux' Data Services |

amerika | American Politics-Inspired Color Palette Generator |

ammiBayes | Bayesian Ammi Model for Continuous Data |

amp | Statistical Test for the Multivariate Point Null Hypotheses |

ampd | An Algorithm for Automatic Peak Detection in Noisy Periodic and Quasi-Periodic Signals |

ampir | Predict Antimicrobial Peptides |

amt | Animal Movement Tools |

anMC | Compute High Dimensional Orthant Probabilities |

anacor | Simple and Canonical Correspondence Analysis |

analogsea | Interface to 'Digital Ocean' |

analogue | Analogue and Weighted Averaging Methods for Palaeoecology |

analogueExtra | Additional Functions for Use with the Analogue Package |

analyzer | Data Analysis and Automated R Notebook Generation |

anapuce | Tools for Microarray Data Analysis |

and | Construct Natural-Language Lists with Internationalization |

andrews | Various Andrews Curves |

andurinha | Make Spectroscopic Data Processing Easier |

anesrake | ANES Raking Implementation |

angstroms | Tools for 'ROMS' the Regional Ocean Modeling System |

aniDom | Inferring Dominance Hierarchies and Estimating Uncertainty |

anim.plots | Simple Animated Plots for R |

animalEKF | Extended Kalman Filters for Animal Movement |

animalTrack | Animal track reconstruction for high frequency 2-dimensional (2D) or 3-dimensional (3D) movement data. |

animaltracker | Animal Tracker |

animation | A Gallery of Animations in Statistics and Utilities to Create Animations |

animint2 | Animated Interactive Grammar of Graphics |

animl | A Collection of ML Tools for Conservation Research |

anipaths | Animation of Multiple Trajectories with Uncertainty |

aniview | Animate Shiny and R Markdown Content when it Comes into View |

anndata | 'anndata' for R |

annotater | Annotate Package Load Calls |

annotator | Image Annotation and Polygon Outlining using Free Drawing |

anocva | A Non-Parametric Statistical Test to Compare Clustering Structures |

anomalize | Tidy Anomaly Detection |

anomaly | Detecting Anomalies in Data |

anovir | Analysis of Virulence |

anscombiser | Create Datasets with Identical Summary Statistics |

antaresEditObject | Edit an 'Antares' Simulation |

antaresProcessing | 'Antares' Results Processing |

antaresRead | Import, Manipulate and Explore the Results of an 'Antares' Simulation |

antaresViz | Antares Visualizations |

anthro | Computation of the WHO Child Growth Standards |

anthroplus | Computation of the WHO 2007 References for School-Age Children and Adolescents (5 to 19 Years) |

anticlust | Subset Partitioning via Anticlustering |

antitrust | Tools for Antitrust Practitioners |

antiword | Extract Text from Microsoft Word Documents |

anyLib | Install and Load Any Package from CRAN, Bioconductor or Github |

anybadger | Create Custom Pipeline Badges |

anyflights | Query 'nycflights13'-Like Air Travel Data for Given Years and Airports |

anytime | Anything to 'POSIXct' or 'Date' Converter |

ao | Alternating Optimization |

aod | Analysis of Overdispersed Data |

aods3 | Analysis of Overdispersed Data using S3 Methods |

aoos | Another Object Orientation System |

aopdata | Data from the 'Access to Opportunities Project (AOP)' |

aoristic | Generates Aoristic Probability Distributions |

aorsf | Accelerated Oblique Random Survival Forests |

aos | Animate on Scroll Library for 'shiny' |

apTreeshape | Analyses of Phylogenetic Treeshape |

apa | Format Outputs of Statistical Tests According to APA Guidelines |

apaTables | Create American Psychological Association (APA) Style Tables |

apaText | Create R Markdown Text for Results in the Style of the American Psychological Association (APA) |

apache.sedona | R Interface for Apache Sedona |

apc | Age-Period-Cohort Analysis |

apcf | Adapted Pair Correlation Function |

apcluster | Affinity Propagation Clustering |

apdesign | An Implementation of the Additive Polynomial Design Matrix |

ape | Analyses of Phylogenetics and Evolution |

apercu | Quick Look at your Data |

apex | Phylogenetic Methods for Multiple Gene Data |

apexcharter | Create Interactive Chart with the JavaScript 'ApexCharts' Library |

aphid | Analysis with Profile Hidden Markov Models |

aphylo | Statistical Inference and Prediction of Annotations in Phylogenetic Trees |

api2lm | Functions and Data Sets for the Book "A Progressive Introduction to Linear Models" |

apisensr | Interface to 'episensr' for Sensitivity Analysis of Epidemiological Results |

aplore3 | Datasets from Hosmer, Lemeshow and Sturdivant, "Applied Logistic Regression" (3rd Ed., 2013) |

aplot | Decorate a 'ggplot' with Associated Information |

aplpack | Another Plot Package: 'Bagplots', 'Iconplots', 'Summaryplots', Slider Functions and Others |

apng | Convert Png Files into Animated Png |

apollo | Tools for Choice Model Estimation and Application |

appleadsR | Get Apple Search Ads Data via the 'Windsor.ai' API |

appler | 'Apple App Store' and 'iTunes' Data Extraction |

applicable | A Compilation of Applicability Domain Methods |

appnn | Amyloid Propensity Prediction Neural Network |

approxOT | Approximate and Exact Optimal Transport Methods |

approximator | Bayesian Prediction of Complex Computer Codes |

approxmatch | Approximately Optimal Fine Balance Matching with Multiple Groups |

appsflyeR | Get Data from 'Appsflyer' via the 'Windsor.ai' API |

aprean3 | Datasets from Draper and Smith "Applied Regression Analysis" (3rd Ed., 1998) |

aprof | Amdahl's Profiler, Directed Optimization Made Easy |

apsimx | Inspect, Read, Edit and Run 'APSIM' "Next Generation" and 'APSIM' Classic |

apt | Asymmetric Price Transmission |

apyramid | Visualize Population Pyramids Aggregated by Age |

aqp | Algorithms for Quantitative Pedology |

aquodom | Access to Aquo domaintables from R (Dutch) |

ar.matrix | Simulate Auto Regressive Data from Precision Matricies |

arabic2kansuji | Convert Arabic Numerals to Kansuji |

arabicStemR | Arabic Stemmer for Text Analysis |

arakno | ARAchnid KNowledge Online |

arc | Association Rule Classification |

archdata | Example Datasets from Archaeological Research |

archeoViz | Visualisation, Exploration, and Web Communication of Archaeological Excavation Data |

archeofrag | Refitting and Spatial Analysis in Archaeology |

archetypal | Finds the Archetypal Analysis of a Data Frame |

archetyper | An Archetype for Data Mining and Data Science Projects |

archetypes | Archetypal Analysis |

archiDART | Plant Root System Architecture Analysis Using DART and RSML Files |

archive | Multi-Format Archive and Compression Support |

archiveRetriever | Retrieve Archived Web Pages from the 'Internet Archive' |

archivist | Tools for Storing, Restoring and Searching for R Objects |

archivist.github | Tools for Archiving, Managing and Sharing R Objects via GitHub |

arcpullr | Pull Data from an 'ArcGIS REST' API |

arctools | Processing and Physical Activity Summaries of Minute Level Activity Data |

ardl.nardl | Linear and Nonlinear Autoregressive Distributed Lag Models: General-to-Specific Approach |

areabiplot | Area Biplot |

areal | Areal Weighted Interpolation |

areaplot | Plot Stacked Areas and Confidence Bands as Filled Polygons |

arena2r | Plots, Summary Statistics and Tools for Arena Simulation Users |

arenar | Arena for the Exploration and Comparison of any ML Models |

arf | Adversarial Random Forests |

arfima | Fractional ARIMA (and Other Long Memory) Time Series Modeling |

argo | Accurate Estimation of Influenza Epidemics using Google Search Data |

argoFloats | Analysis of Oceanographic Argo Floats |

argon2 | Secure Password Hashing |

argonDash | Argon Shiny Dashboard Template |

argonR | R Interface to Argon HTML Design |

argosfilter | Argos Locations Filter |

argparse | Command Line Optional and Positional Argument Parser |

argparser | Command-Line Argument Parser |

argus | Random Variate Generator for the Argus Distribution |

ari | Automated R Instructor |

aricode | Efficient Computations of Standard Clustering Comparison Measures |

arkdb | Archive and Unarchive Databases Using Flat Files |

arkhe | Tools for Cleaning Rectangular Data |

arm | Data Analysis Using Regression and Multilevel/Hierarchical Models |

armada | A Statistical Methodology to Select Covariates in High-Dimensional Data under Dependence |

armspp | Adaptive Rejection Metropolis Sampling (ARMS) via 'Rcpp' |

arnie | "Arnie" box office records 1982-2014 |

aroma.affymetrix | Analysis of Large Affymetrix Microarray Data Sets |

aroma.apd | A Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated] |

aroma.cn | Copy-Number Analysis of Large Microarray Data Sets |

aroma.core | Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework |

arpr | Advanced R Pipes |

arrApply | Apply a Function to a Margin of an Array |

arrangements | Fast Generators and Iterators for Permutations, Combinations, Integer Partitions and Compositions |

arrayhelpers | Convenience Functions for Arrays |

arrow | Integration to 'Apache' 'Arrow' |

ars | Adaptive Rejection Sampling |

arse | Area of Resilience to Stress Event |

arsenal | An Arsenal of 'R' Functions for Large-Scale Statistical Summaries |

artfima | ARTFIMA Model Estimation |

arthistory | Art History Textbook Data |

arules | Mining Association Rules and Frequent Itemsets |

arulesCBA | Classification Based on Association Rules |

arulesNBMiner | Mining NB-Frequent Itemsets and NB-Precise Rules |

arulesSequences | Mining Frequent Sequences |

arulesViz | Visualizing Association Rules and Frequent Itemsets |

asaur | Data Sets for "Applied Survival Analysis Using R"" |

asbio | A Collection of Statistical Tools for Biologists |

ascentTraining | Ascent Training Datasets |

ascii | Export R Objects to Several Markup Languages |

asciiSetupReader | Reads Fixed-Width ASCII Data Files (.txt or .dat) that Have Accompanying Setup Files (.sps or .sas) |

asciicast | Create 'Ascii' Screen Casts from R Scripts |

asciichartr | Lightweight ASCII Line Graphs |

asciiruler | Render an ASCII Ruler |

ascotraceR | Simulate the Spread of Ascochyta Blight in Chickpea |

asd | Simulations for Adaptive Seamless Designs |

asdreader | Reading ASD Binary Files in R |

ash | David Scott's ASH Routines |

ashr | Methods for Adaptive Shrinkage, using Empirical Bayes |

asht | Applied Statistical Hypothesis Tests |

askpass | Safe Password Entry for R, Git, and SSH |

aslib | Interface to the Algorithm Selection Benchmark Library |

asnipe | Animal Social Network Inference and Permutations for Ecologists |

aspect | A General Framework for Multivariate Analysis with Optimal Scaling |

aspi | Analysis of Symmetry of Parasitic Infections |

aspline | Spline Regression with Adaptive Knot Selection |

asremlPlus | Augments 'ASReml-R' in Fitting Mixed Models and Packages Generally in Exploring Prediction Differences |

assert | Validate Function Arguments |

assertable | Verbose Assertions for Tabular Data (Data.frames and Data.tables) |

assertive | Readable Check Functions to Ensure Code Integrity |

assertive.base | A Lightweight Core of the 'assertive' Package |

assertive.code | Assertions to Check Properties of Code |

assertive.data | Assertions to Check Properties of Data |

assertive.data.uk | Assertions to Check Properties of Strings |

assertive.data.us | Assertions to Check Properties of Strings |

assertive.datetimes | Assertions to Check Properties of Dates and Times |

assertive.files | Assertions to Check Properties of Files |

assertive.matrices | Assertions to Check Properties of Matrices |

assertive.models | Assertions to Check Properties of Models |

assertive.numbers | Assertions to Check Properties of Numbers |

assertive.properties | Assertions to Check Properties of Variables |

assertive.reflection | Assertions for Checking the State of R |

assertive.sets | Assertions to Check Properties of Sets |

assertive.strings | Assertions to Check Properties of Strings |

assertive.types | Assertions to Check Types of Variables |

assertr | Assertive Programming for R Analysis Pipelines |

assertthat | Easy Pre and Post Assertions |

assignPOP | Population Assignment using Genetic, Non-Genetic or Integrated Data in a Machine Learning Framework |

assignR | Infer Geographic Origin from Isotopic Data |

assist | A Suite of R Functions Implementing Spline Smoothing Techniques |

assocInd | Implements New and Existing Association Indices for Constructing Animal Social Networks |

assortnet | Calculate the Assortativity Coefficient of Weighted and Binary Networks |

ast2ast | Translates an R Function to a C++ Function |

asteRisk | Computation of Satellite Position |

aster | Aster Models |

aster2 | Aster Models |

astroFns | Astronomy: Time and Position Functions, Misc. Utilities |

astrochron | A Computational Tool for Astrochronology |

astrodatR | Astronomical Data |

astsa | Applied Statistical Time Series Analysis |

asylum | Data on Asylum and Resettlement for the UK |

asymLD | Asymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic Data |

asymmetry | Multidimensional Scaling of Asymmetric Proximities |

asymmetry.measures | Asymmetry Measures for Probability Density Functions |

asympTest | A Simple R Package for Classical Parametric Statistical Tests and Confidence Intervals in Large Samples |

asymptor | Estimate Asymptomatic Cases via Capture/Recapture Methods |

async | Asynchronous Code Constructs: Generators, Yield, Async, Await |

ata | Automated Test Assembly |

atable | Create Tables for Reporting Clinical Trials |

atakrig | Area-to-Area Kriging |

atime | Asymptotic Timing |

atlas | Stanford 'ATLAS' Search Engine API |

atmopt | Analysis-of-Marginal-Tail-Means |

atom4R | Tools to Handle and Publish Metadata as 'Atom' XML Format |

atpolR | ATPOL Grid Implementation |

atsd | Support Querying Axibase Time-Series Database |

attachment | Deal with Dependencies |

attempt | Tools for Defensive Programming |

attention | Self-Attention Algorithm |

attenuation | Correcting for Attenuation Due to Measurement Error |

attrib | Attributable Burden of Disease |

auRoc | Various Methods to Estimate the AUC |

auctestr | Statistical Testing for AUC Data |

auctionr | Estimate First-Price Auction Model |

audio | Audio Interface for R |

audiometry | Standard Conform Pure Tone Audiometry (PTA) Plots |

audit | Bounds for Accounting Populations |

auditor | Model Audit - Verification, Validation, and Error Analysis |

audrex | Automatic Dynamic Regression using Extreme Gradient Boosting |

audubon | Japanese Text Processing Tools |

augSIMEX | Analysis of Data with Mixed Measurement Error and Misclassification in Covariates |

augmentedRCBD | Analysis of Augmented Randomised Complete Block Designs |

auk | eBird Data Extraction and Processing in R |

aum | Area Under Minimum of False Positives and Negatives |

ausplotsR | TERN AusPlots Analysis Package |

auth0 | Secure Authentication in Shiny with Auth0 |

auto.pca | Automatic Variable Reduction Using Principal Component Analysis |

autoBagging | Learning to Rank Bagging Workflows with Metalearning |

autoCovariateSelection | Automated Covariate Selection Using HDPS Algorithm |

autoFC | Automatic Construction of Forced-Choice Tests |

autoFRK | Automatic Fixed Rank Kriging |

autoGO | Auto-GO: Reproducible, Robust and High Quality Ontology Enrichment Visualizations |

autoMFA | Algorithms for Automatically Fitting MFA Models |

autoMrP | Improving MrP with Ensemble Learning |

autoRasch | Semi-Automated Rasch Analysis |

autoReg | Automatic Linear and Logistic Regression and Survival Analysis |

autoTS | Automatic Model Selection and Prediction for Univariate Time Series |

autocart | Autocorrelation Regression Trees |

autocogs | Automatic Cognostic Summaries |

autoencoder | Sparse Autoencoder for Automatic Learning of Representative Features from Unlabeled Data |

autoharp | Semi-Automatic Grading of R and Rmd Scripts |

autohrf | Automated Generation of Data-Informed GLM Models in Task-Based fMRI Data Analysis |

autoimage | Multiple Heat Maps for Projected Coordinates |

autokeras | R Interface to 'AutoKeras' |

automagic | Automagically Document and Install Packages Necessary to Run R Code |

automap | Automatic Interpolation Package |

automl | Deep Learning with Metaheuristic |

autonewsmd | Auto-Generate Changelog using Conventional Commits |

autoplotly | Automatic Generation of Interactive Visualizations for Statistical Results |

autoshiny | Automatic Transformation of an 'R' Function into a 'shiny' App |

autostats | Auto Stats |

autostsm | Automatic Structural Time Series Models |

autothresholdr | An R Port of the 'ImageJ' Plugin 'Auto Threshold' |

av | Working with Audio and Video in R |

available | Check if the Title of a Package is Available, Appropriate and Interesting |

avar | Allan Variance |

averisk | Calculation of Average Population Attributable Fractions and Confidence Intervals |

avfintools | Financial Analysis Tools Using Data from 'Alpha Vantager' |

avidaR | A Computational Biologistâ€™s Toolkit To Get Data From 'avidaDB' |

avocado | Weekly Hass Avocado Sales Summary |

aweSOM | Interactive Self-Organizing Maps |

aweek | Convert Dates to Arbitrary Week Definitions |

awinR | Get Data from 'Awin' via the 'Windsor.ai' API |

aws | Adaptive Weights Smoothing |

aws.alexa | Client for the Amazon Alexa Web Information Services API |

aws.comprehend | Client for 'AWS Comprehend' |

aws.ec2metadata | Get EC2 Instance Metadata |

aws.ecx | Communicating with AWS EC2 and ECS using AWS REST APIs |

aws.iam | AWS IAM Client Package |

aws.kms | 'AWS Key Management Service' Client Package |

aws.lambda | AWS Lambda Client Package |

aws.polly | Client for AWS Polly |

aws.s3 | 'AWS S3' Client Package |

aws.signature | Amazon Web Services Request Signatures |

aws.transcribe | Client for 'AWS Transcribe' |

aws.translate | Client for 'AWS Translate' |

awsMethods | Class and Methods Definitions for Packages 'aws', 'adimpro', 'fmri', 'dwi' |

aziztest | Novel Statistical Test for Aberration Enrichment |

azlogr | Logging in 'R' and Post to 'Azure Log Analytics' Workspace |

azuremlsdk | Interface to the 'Azure Machine Learning' 'SDK' |

BACCO | Bayesian Analysis of Computer Code Output (BACCO) |

BACCT | Bayesian Augmented Control for Clinical Trials |

BACprior | Choice of Omega in the BAC Algorithm |

BAGofT | A Binary Regression Adaptive Goodness-of-Fit Test (BAGofT) |

BALCONY | Better ALignment CONsensus analYsis |

BALLI | Expression RNA-Seq Data Analysis Based on Linear Mixed Model |

BAMBI | Bivariate Angular Mixture Models |

BAMMtools | Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees |

BANOVA | Hierarchical Bayesian ANOVA Models |

BAR | Bayesian Adaptive Randomization |

BARIS | Access and Import Data from the French Open Data Portal |

BART | Bayesian Additive Regression Trees |

BAS | Bayesian Variable Selection and Model Averaging using Bayesian Adaptive Sampling |

BASS | Bayesian Adaptive Spline Surfaces |

BASiNET | Classification of RNA Sequences using Complex Network Theory |

BASiNETEntropy | Classification of RNA Sequences using Complex Network and Information Theory |

BAT | Biodiversity Assessment Tools |

BAYSTAR | On Bayesian Analysis of Threshold Autoregressive Models |

BAwiR | Analysis of Basketball Data |

BB | Solving and Optimizing Large-Scale Nonlinear Systems |

BBEST | Bayesian Estimation of Incoherent Neutron Scattering Backgrounds |

BBI | Benthic Biotic Indices Calculation from Composition Data |

BBSSL | Bayesian Bootstrap Spike-and-Slab LASSO |

BBcor | Bayesian Bootstrapping Correlations |

BBmisc | Miscellaneous Helper Functions for B. Bischl |

BCA1SG | Block Coordinate Ascent with One-Step Generalized Rosen Algorithm |

BCBCSF | Bias-Corrected Bayesian Classification with Selected Features |

BCC1997 | Calculation of Option Prices Based on a Universal Solution |

BCClong | Bayesian Consensus Clustering for Multiple Longitudinal Features |

BCDAG | Bayesian Structure and Causal Learning of Gaussian Directed Graphs |

BCDating | Business Cycle Dating and Plotting Tools |

BCE | Bayesian Composition Estimator: Estimating Sample (Taxonomic) Composition from Biomarker Data |

BCEA | Bayesian Cost Effectiveness Analysis |

BCEE | The Bayesian Causal Effect Estimation Algorithm |

BCHM | Clinical Trial Calculation Based on BCHM Design |

BCRA | Breast Cancer Risk Assessment |

BCSub | A Bayesian Semiparametric Factor Analysis Model for Subtype Identification (Clustering) |

BCT | Bayesian Context Trees for Discrete Time Series |

BCgee | Bias-Corrected Estimates for Generalized Linear Models for Dependent Data |

BClustLonG | A Dirichlet Process Mixture Model for Clustering Longitudinal Gene Expression Data |

BDEsize | Efficient Determination of Sample Size in Balanced Design of Experiments |

BDP2 | Bayesian Adaptive Designs for Phase II Trials with Binary Endpoint |

BDWreg | Bayesian Inference for Discrete Weibull Regression |

BDgraph | Bayesian Structure Learning in Graphical Models using Birth-Death MCMC |

BE | Bioequivalence Study Data Analysis |

BEACH | Biometric Exploratory Analysis Creation House |

BED | Biological Entity Dictionary (BED) |

BEDASSLE | Quantifies Effects of Geo/Eco Distance on Genetic Differentiation |

BEDMatrix | Extract Genotypes from a PLINK .bed File |

BEKKs | Multivariate Conditional Volatility Modelling and Forecasting |

BENMMI | Benthic Multi-Metric Index |

BEST | Bayesian Estimation Supersedes the t-Test |

BESTree | Branch-Exclusive Splits Trees |

BET | Binary Expansion Testing |

BETS | Brazilian Economic Time Series |

BFF | Bayes Factor Functions |

BFS | Get Data from the Swiss Statistical Office |

BFpack | Flexible Bayes Factor Testing of Scientific Expectations |

BGData | A Suite of Packages for Analysis of Big Genomic Data |

BGGE | Bayesian Genomic Linear Models Applied to GE Genome Selection |

BGGM | Bayesian Gaussian Graphical Models |

BGLR | Bayesian Generalized Linear Regression |

BGVAR | Bayesian Global Vector Autoregressions |

BGmisc | Behavior Genetic Modeling Functions |

BH | Boost C++ Header Files |

BHAI | Estimate the Burden of Healthcare-Associated Infections |

BHH2 | Useful Functions for Box, Hunter and Hunter II |

BHMSMAfMRI | Bayesian Hierarchical Multi-Subject Multiscale Analysis of Functional MRI (fMRI) Data |

BHSBVAR | Structural Bayesian Vector Autoregression Models |

BHTSpack | Bayesian Multi-Plate High-Throughput Screening of Compounds |

BI | Blinding Assessment Indexes for Randomized, Controlled, Clinical Trials |

BICORN | Integrative Inference of De Novo Cis-Regulatory Modules |

BIEN | Tools for Accessing the Botanical Information and Ecology Network Database |

BIFIEsurvey | Tools for Survey Statistics in Educational Assessment |

BIGDAWG | Case-Control Analysis of Multi-Allelic Loci |

BIGL | Biochemically Intuitive Generalized Loewe Model |

BINCOR | Estimate the Correlation Between Two Irregular Time Series |

BINtools | Bayesian BIN (Bias, Information, Noise) Model of Forecasting |

BIOMASS | Estimating Aboveground Biomass and Its Uncertainty in Tropical Forests |

BIOdry | Multilevel Modeling of Dendroclimatical Fluctuations |

BIS | Programmatic Access to Bank for International Settlements Data |

BISdata | Download Data from the Bank for International Settlements (BIS) |

BLCOP | Black-Litterman and Copula Opinion Pooling Frameworks |

BLModel | Black-Litterman Posterior Distribution |

BLOQ | Impute and Analyze Data with BLOQ Observations |

BLPestimatoR | Performs a BLP Demand Estimation |

BLR | Bayesian Linear Regression |

BLRPM | Stochastic Rainfall Generator Bartlett-Lewis Rectangular Pulse Model |

BLRShiny | Interactive Document for Working with Binary Logistic Regression Analysis |

BLRShiny2 | Interactive Document for Working with Binary Logistic Regression Analysis |

BLSM | Bayesian Latent Space Model |

BMA | Bayesian Model Averaging |

BMAmevt | Multivariate Extremes: Bayesian Estimation of the Spectral Measure |

BMRBr | 'BMRB' File Downloader |

BMRMM | An Implementation of the Bayesian Markov (Renewal) Mixed Models |

BMRSr | Wrapper Functions to the 'BMRS API' |

BMRV | Bayesian Models for Rare Variant Association Analysis |

BMS | Bayesian Model Averaging Library |

BMT | The BMT Distribution |

BMTAR | Bayesian Approach for MTAR Models with Missing Data |

BMTME | Bayesian Multi-Trait Multi-Environment for Genomic Selection Analysis |

BMisc | Miscellaneous Functions for Panel Data, Quantiles, and Printing Results |

BNPTSclust | A Bayesian Nonparametric Algorithm for Time Series Clustering |

BNPdensity | Ferguson-Klass Type Algorithm for Posterior Normalized Random Measures |

BNPmix | Bayesian Nonparametric Mixture Models |

BNSL | Bayesian Network Structure Learning |

BNSP | Bayesian Non- And Semi-Parametric Model Fitting |

BNrich | Pathway Enrichment Analysis Based on Bayesian Network |

BOIN | Bayesian Optimal INterval (BOIN) Design for Single-Agent and Drug- Combination Phase I Clinical Trials |

BOJ | Interface to Bank of Japan Statistics |

BOSO | Bilevel Optimization Selector Operator |

BOSSreg | Best Orthogonalized Subset Selection (BOSS) |

BPM | Bayesian Purity Model to Estimate Tumor Purity |

BRACoD.R | BRACoD: Bayesian Regression Analysis of Compositional Data |

BRDT | Binomial Reliability Demonstration Tests |

BRETIGEA | Brain Cell Type Specific Gene Expression Analysis |

BRINDA | Computation of BRINDA Adjusted Micronutrient Biomarkers for Inflammation |

BRISC | Fast Inference for Large Spatial Datasets using BRISC |

BRL | Beta Record Linkage |

BRugs | Interface to the 'OpenBUGS' MCMC Software |

BSBT | The Bayesian Spatial Bradley--Terry Model |

BSDA | Basic Statistics and Data Analysis |

BSGW | Bayesian Survival Model with Lasso Shrinkage Using Generalized Weibull Regression |

BSL | Bayesian Synthetic Likelihood |

BSPADATA | Bayesian Proposal to Fit Spatial Econometric Models |

BSPBSS | Bayesian Spatial Blind Source Separation |

BSS | Brownian Semistationary Processes |

BSSasymp | Asymptotic Covariance Matrices of Some BSS Mixing and Unmixing Matrix Estimates |

BSSoverSpace | Blind Source Separation for Multivariate Spatial Data using Eigen Analysis |

BSSprep | Whitening Data as Preparation for Blind Source Separation |

BSW | Fitting a Log-Binomial Model using the Bekhit-SchÃ¶pe-Wagenpfeil (BSW) Algorithm |

BSagri | Safety Assessment in Agricultural Field Trials |

BTLLasso | Modelling Heterogeneity in Paired Comparison Data |

BTM | Biterm Topic Models for Short Text |

BTSPAS | Bayesian Time-Stratified Population Analysis |

BTSR | Bounded Time Series Regression |

BTYD | Implementing BTYD Models with the Log Sum Exp Patch |

BTYDplus | Probabilistic Models for Assessing and Predicting your Customer Base |

BTdecayLasso | Bradley-Terry Model with Exponential Time Decayed Log-Likelihood and Adaptive Lasso |

BUCSS | Bias and Uncertainty Corrected Sample Size |

BVAR | Hierarchical Bayesian Vector Autoregression |

BVARverse | Tidy Bayesian Vector Autoregression |

BVSNLP | Bayesian Variable Selection in High Dimensional Settings using Nonlocal Priors |

BWGS | BreedWheat Genomic Selection Pipeline |

BWStest | Baumgartner Weiss Schindler Test of Equal Distributions |

BaM | Functions and Datasets for "Bayesian Methods: A Social and Behavioral Sciences Approach" |

BaSTA | Age-Specific Survival Analysis from Incomplete Capture-Recapture/Recovery Data |

BaSkePro | Bayesian Model to Archaeological Faunal Skeletal Profiles |

BalanceCheck | Balance Check for Multiple Covariates in Matched Observational Studies |

BalancedSampling | Balanced and Spatially Balanced Sampling |

Ball | Statistical Inference and Sure Independence Screening via Ball Statistics |

BallMapper | The Ball Mapper Algorithm |

BarBorGradient | Function Minimum Approximator |

BarcodingR | Species Identification using DNA Barcodes |

Barnard | Barnard's Unconditional Test |

BartMixVs | Variable Selection Using Bayesian Additive Regression Trees |

Barycenter | Regularized Wasserstein Distances and Barycenters |

BaseSet | Working with Sets the Tidy Way |

BasketballAnalyzeR | Analysis and Visualization of Basketball Data |

BatchExperiments | Statistical Experiments on Batch Computing Clusters |

BatchGetSymbols | Downloads and Organizes Financial Data for Multiple Tickers |

BatchJobs | Batch Computing with R |

BayLum | Chronological Bayesian Models Integrating Optically Stimulated Luminescence and Radiocarbon Age Dating |

BayesARIMAX | Bayesian Estimation of ARIMAX Model |

BayesBEKK | Bayesian Estimation of Bivariate Volatility Model |

BayesBP | Bayesian Estimation using Bernstein Polynomial Fits Rate Matrix |

BayesBinMix | Bayesian Estimation of Mixtures of Multivariate Bernoulli Distributions |

BayesCACE | Bayesian Model for CACE Analysis |

BayesCR | Bayesian Analysis of Censored Regression Models Under Scale Mixture of Skew Normal Distributions |

BayesCTDesign | Two Arm Bayesian Clinical Trial Design with and Without Historical Control Data |

BayesCombo | Bayesian Evidence Combination |

BayesComm | Bayesian Community Ecology Analysis |

BayesDA | Functions and Datasets for the book "Bayesian Data Analysis" |

BayesDesign | Bayesian Single-Arm Design with Survival Endpoints |

BayesDissolution | Bayesian Models for Dissolution Testing |

BayesESS | Determining Effective Sample Size |

BayesFM | Bayesian Inference for Factor Modeling |

BayesFactor | Computation of Bayes Factors for Common Designs |

BayesGOF | Bayesian Modeling via Frequentist Goodness-of-Fit |

BayesGPfit | Fast Bayesian Gaussian Process Regression Fitting |

BayesGWQS | Bayesian Grouped Weighted Quantile Sum Regression |

BayesLCA | Bayesian Latent Class Analysis |

BayesLN | Bayesian Inference for Log-Normal Data |

BayesLogit | PolyaGamma Sampling |

BayesMFSurv | Bayesian Misclassified-Failure Survival Model |

BayesMRA | Bayesian Multi-Resolution Gaussian Process Approximations |

BayesMallows | Bayesian Preference Learning with the Mallows Rank Model |

BayesMassBal | Bayesian Data Reconciliation of Separation Processes |

BayesMixSurv | Bayesian Mixture Survival Models using Additive Mixture-of-Weibull Hazards, with Lasso Shrinkage and Stratification |

BayesMultMeta | Bayesian Multivariate Meta-Analysis |

BayesMultiMode | Testing and Detecting Multimodality using Bayesian Methods |

BayesNSGP | Bayesian Analysis of Non-Stationary Gaussian Process Models |

BayesNetBP | Bayesian Network Belief Propagation |

BayesOrdDesign | Bayesian Group Sequential Design for Ordinal Data |

BayesPPD | Bayesian Power Prior Design |

BayesPieceHazSelect | Variable Selection in a Hierarchical Bayesian Model for a Hazard Function |

BayesPiecewiseICAR | Hierarchical Bayesian Model for a Hazard Function |

BayesPostEst | Generate Postestimation Quantities for Bayesian MCMC Estimation |

BayesProject | Fast Projection Direction for Multivariate Changepoint Detection |

BayesRGMM | Bayesian Robust Generalized Mixed Models for Longitudinal Data |

BayesRS | Bayes Factors for Hierarchical Linear Models with Continuous Predictors |

BayesReversePLLH | Fits the Bayesian Piecewise Linear Log-Hazard Model |

BayesS5 | Bayesian Variable Selection Using Simplified Shotgun Stochastic Search with Screening (S5) |

BayesSAE | Bayesian Analysis of Small Area Estimation |

BayesSPsurv | Bayesian Spatial Split Population Survival Model |

BayesSUR | Bayesian Seemingly Unrelated Regression |

BayesSampling | Bayes Linear Estimators for Finite Population |

BayesSenMC | Different Models of Posterior Distributions of Adjusted Odds Ratio |

BayesSpec | Bayesian Spectral Analysis Techniques |

BayesSurvival | Bayesian Survival Analysis for Right Censored Data |

BayesTools | Tools for Bayesian Analyses |

BayesTree | Bayesian Additive Regression Trees |

BayesTreePrior | Bayesian Tree Prior Simulation |

BayesTwin | Bayesian Analysis of Item-Level Twin Data |

BayesVarSel | Bayes Factors, Model Choice and Variable Selection in Linear Models |

BayesX | R Utilities Accompanying the Software Package BayesX |

BayesXsrc | R Package Distribution of the BayesX C++ Sources |

BayesianGLasso | Bayesian Graphical Lasso |

BayesianLaterality | Predict Brain Asymmetry Based on Handedness and Dichotic Listening |

BayesianMediationA | Bayesian Mediation Analysis |

BayesianNetwork | Bayesian Network Modeling and Analysis |

BayesianPower | Sample Size and Power for Comparing Inequality Constrained Hypotheses |

BayesianReasoning | Plot Positive and Negative Predictive Values for Medical Tests |

Bayesiangammareg | Bayesian Gamma Regression: Joint Mean and Shape Modeling |

Bayesiantreg | Bayesian t Regression for Modeling Mean and Scale Parameters |

Bayesrel | Bayesian Reliability Estimation |

BcDiag | Diagnostics Plots for Bicluster Data |

Bchron | Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate Estimation, and Non-Parametric Phase Modelling |

BeSS | Best Subset Selection in Linear, Logistic and CoxPH Models |

BeastJar | JAR Dependency for MCMC Using 'BEAST' |

BeeGUTS | General Unified Threshold Model of Survival for Bees using Bayesian Inference |

Benchmarking | Benchmark and Frontier Analysis Using DEA and SFA |

BenfordTests | Statistical Tests for Evaluating Conformity to Benford's Law |

Bergm | Bayesian Exponential Random Graph Models |

Bessel | Computations and Approximations for Bessel Functions |

Bestie | Bayesian Estimation of Intervention Effects |

BetaBit | Mini Games from Adventures of Beta and Bit |

BetaPASS | Calculate Power and Sample Size with Beta Regression |

BetterReg | Better Statistics for OLS and Binomial Logistic Regression |

BeviMed | Bayesian Evaluation of Variant Involvement in Mendelian Disease |

BeyondBenford | Compare the Goodness of Fit of Benford's and Blondeau Da Silva's Digit Distributions to a Given Dataset |

Bhat | General Likelihood Exploration |

BiBitR | R Wrapper for Java Implementation of BiBit |

BiCausality | Binary Causality Inference Framework |

BiDAG | Bayesian Inference for Directed Acyclic Graphs |

BiDimRegression | Calculates the Bidimensional Regression Between Two 2D Configurations |

BiProbitPartial | Bivariate Probit with Partial Observability |

BiSEp | Toolkit to Identify Candidate Synthetic Lethality |

BiTrinA | Binarization and Trinarization of One-Dimensional Data |

BiasCorrector | A GUI to Correct Measurement Bias in DNA Methylation Analyses |

BiasedUrn | Biased Urn Model Distributions |

BibPlots | Plot Functions for Use in Bibliometrics |

BifactorIndicesCalculator | Bifactor Indices Calculator |

BigQuic | Big Quadratic Inverse Covariance Estimation |

BigVAR | Dimension Reduction Methods for Multivariate Time Series |

BimodalIndex | The Bimodality Index |

BinGSD | Calculation for Single Arm Group Sequential Test with Binary Endpoint |

BinMat | Processes Binary Data Obtained from Fragment Analysis (Such as AFLPs, ISSRs, and RFLPs) |

BinNonNor | Data Generation with Binary and Continuous Non-Normal Components |

BinNor | Simultaneous Generation of Multivariate Binary and Normal Variates |

BinOrdNonNor | Concurrent Generation of Binary, Ordinal and Continuous Data |

BinSegBstrap | Piecewise Smooth Regression by Bootstrapped Binary Segmentation |

Binarize | Binarization of One-Dimensional Data |

BinaryDosage | Creates, Merges, and Reads Binary Dosage Files |

BinaryEMVS | Variable Selection for Binary Data Using the EM Algorithm |

BinaryEPPM | Mean and Variance Modeling of Binary Data |

BinarybalancedCut | Threshold Cut Point of Probability for a Binary Classifier Model |

BioCircos | Interactive Circular Visualization of Genomic Data using 'htmlwidgets' and 'BioCircos.js' |

BioInsight | Filter and Plot RNA Biotypes |

BioMark | Find Biomarkers in Two-Class Discrimination Problems |

BioPET | Biomarker Prognostic Enrichment Tool |

BioPETsurv | Biomarker Prognostic Enrichment Tool for Time-to-Event Trial |

BioProbability | Probability in Biostatistics |

BioRssay | Analyze Bioassays and Probit Graphs |

BioStatR | Initiation Ã La Statistique Avec R |

BioVenn | Create Area-Proportional Venn Diagrams from Biological Lists |

BiocManager | Access the Bioconductor Project Package Repository |

Biocomb | Feature Selection and Classification with the Embedded Validation Procedures for Biomedical Data Analysis |

Biodem | Biodemography Functions |

BiodiversityR | Package for Community Ecology and Suitability Analysis |

Bioi | Biological Image Analysis |

Bios2cor | From Biological Sequences and Simulations to Correlation Analysis |

Biostatistics | Statistics Tutorials for Biologists |

BipartiteModularityMaximization | Partition Bipartite Network into Non-Overlapping Biclusters by Optimizing Bipartite Modularity |

BiplotML | Biplots Estimation with Algorithms ML |

BisRNA | Analysis of RNA Cytosine-5 Methylation |

BisqueRNA | Decomposition of Bulk Expression with Single-Cell Sequencing |

BivGeo | Basu-Dhar Bivariate Geometric Distribution |

BivRec | Bivariate Alternating Recurrent Event Data Analysis |

BivRegBLS | Tolerance Interval and EIV Regression - Method Comparison Studies |

BivUnifBin | Generation of Bivariate Uniform Data and Its Relation to Bivariate Binary Data |

Bivariate.Pareto | Bivariate Pareto Models |

BlackCarbon | Processing Raw Black Carbon Concentration |

BlakerCI | Blaker's Binomial and Poisson Confidence Limits |

BlandAltmanLeh | Plots (Slightly Extended) Bland-Altman Plots |

BlanketStatsments | Build and Compare Statistical Models |

Blaunet | Calculate and Analyze Blau Statuses for Measuring Social Distance |

Blendstat | Joint Analysis of Experiments with Mixtures and Random Effects |

BlockCov | Estimation of Large Block Covariance Matrices |

BlockmodelingGUI | GUI for the Generalised Blockmodeling of Valued Networks |

BlythStillCasellaCI | Blyth-Still-Casella Exact Binomial Confidence Intervals |

BoSSA | A Bunch of Structure and Sequence Analysis |

BoardGames | Board Games and Tools for Building Board Games |

Bodi | Boosting Diversity in Regression Ensembles |

Bolstad | Functions for Elementary Bayesian Inference |

Bolstad2 | Bolstad Functions |

BoltzMM | Boltzmann Machines with MM Algorithms |

BonEV | An Improved Multiple Testing Procedure for Controlling False Discovery Rates |

BondValuation | Fixed Coupon Bond Valuation Allowing for Odd Coupon Periods and Various Day Count Conventions |

BoneProfileR | Tools to Study Bone Compactness |

BoolFilter | Optimal Estimation of Partially Observed Boolean Dynamical Systems |

BoolNet | Construction, Simulation and Analysis of Boolean Networks |

Boom | Bayesian Object Oriented Modeling |

BoomSpikeSlab | MCMC for Spike and Slab Regression |

BoostMLR | Boosting for Multivariate Longitudinal Responses |

BootMRMR | Bootstrap-MRMR Technique for Informative Gene Selection |

BootPR | Bootstrap Prediction Intervals and Bias-Corrected Forecasting |

BootWPTOS | Test Stationarity using Bootstrap Wavelet Packet Tests |

BootstrapQTL | Bootstrap cis-QTL Method that Corrects for the Winner's Curse |

Boov | Boolean Operations on Volumes |

Boptbd | Bayesian Optimal Block Designs |

Boruta | Wrapper Algorithm for All Relevant Feature Selection |

BosonSampling | Classical Boson Sampling |

BoundEdgeworth | Bound on the Error of the First-Order Edgeworth Expansion |

BoutrosLab.plotting.general | Functions to Create Publication-Quality Plots |

BradleyTerry2 | Bradley-Terry Models |

BrailleR | Improved Access for Blind Users |

BrainCon | Inference the Partial Correlations Based on Time Series Data |

BranchGLM | Efficient Branch and Bound Variable Selection for GLMs using 'RcppArmadillo' |

Branching | Simulation and Estimation for Branching Processes |

BrazilMet | Download and Processing of Automatic Weather Stations (AWS) Data of INMET-Brazil |

BreakPoints | Identify Breakpoints in Series of Data |

Brobdingnag | Very Large Numbers in R |

BrownDog | Brown Dog R Interface |

Brq | Bayesian Analysis of Quantile Regression Models |

Brundle | Normalisation Tools for Inter-Condition Variability of ChIP-Seq Data |

BsMD | Bayes Screening and Model Discrimination |

Buddle | A Deep Learning for Statistical Classification and Regression Analysis with Random Effects |

BuildSys | System for Building and Debugging C/C++ Dynamic Libraries |

BurStFin | Burns Statistics Financial |

BurStMisc | Burns Statistics Miscellaneous |

BusinessDuration | Calculates Business Duration Between Two Dates |

BuyseTest | Generalized Pairwise Comparisons |

Bvalue | B-Value and Empirical Equivalence Bound |

BwQuant | Bandwidth Selectors for Local Linear Quantile Regression |

bRacatus | A Method to Estimate the Accuracy and Biogeographical Status of Georeferenced Biological Data |

bReeze | Functions for Wind Resource Assessment |

bSims | Bird Point Count Simulator |

bWGR | Bayesian Whole-Genome Regression |

baRcodeR | Label Creation for Tracking and Collecting Data from Biological Samples |

baRulho | Quantifying Habitat-Induced Acoustic Signal Degradation |

babel | Ribosome Profiling Data Analysis |

babelgene | Gene Orthologs for Model Organisms in a Tidy Data Format |

babelmixr2 | Use 'nlmixr2' to Interact with Open Source and Commercial Software |

babelwhale | Talking to 'Docker' and 'Singularity' Containers |

babette | Control 'BEAST2' |

babsim.hospital | Bartz & Bartz Simulation Hospital |

babynames | US Baby Names 1880-2017 |

babynamesIL | Israel Baby Names 1948-2021 |

bacistool | Bayesian Classification and Information Sharing (BaCIS) Tool for the Design of Multi-Group Phase II Clinical Trials |

backShift | Learning Causal Cyclic Graphs from Unknown Shift Interventions |

backbone | Extracts the Backbone from Graphs |

backpipe | Backward Pipe (Right-to-Left) Operator |

backports | Reimplementations of Functions Introduced Since R-3.0.0 |

backtest | Exploring Portfolio-Based Conjectures About Financial Instruments |

bacondecomp | Goodman-Bacon Decomposition |

bacr | Bayesian Adjustment for Confounding |

badger | Badge for R Package |

baffle | Make Waffle Plots with Base Graphics |

bagged.outliertrees | Robust Explainable Outlier Detection Based on OutlierTree |

baggr | Bayesian Aggregate Treatment Effects |

baguette | Efficient Model Functions for Bagging |

bahc | Filter Covariance and Correlation Matrices with Bootstrapped-Averaged Hierarchical Ansatz |

bain | Bayes Factors for Informative Hypotheses |

baizer | Useful Functions for Data Processing |

bakR | Analyze and Compare Nucleotide Recoding RNA Sequencing Datasets |

bakeoff | Data from "The Great British Bake Off" |

bama | High Dimensional Bayesian Mediation Analysis |

bamboo | Protein Secondary Structure Prediction Using the Bamboo Method |

bambooHR | A Wrapper to the 'BambooHR' API |

bamdit | Bayesian Meta-Analysis of Diagnostic Test Data |

bamlss | Bayesian Additive Models for Location, Scale, and Shape (and Beyond) |

bamm | Species Distribution Models as a Function of Biotic, Abiotic and Movement Factors (BAM) |

bamp | Bayesian Age-Period-Cohort Modeling and Prediction |

bandit | Functions for Simple a/B Split Test and Multi-Armed Bandit Analysis |

bang | Bayesian Analysis, No Gibbs |

bangladesh | Provides Ready to Use Shapefiles for Geographical Map of Bangladesh |

bannerCommenter | Make Banner Comments with a Consistent Format |

banter | BioAcoustic eveNT classifiER |

banxicoR | Download Data from the Bank of Mexico |

bapred | Batch Effect Removal and Addon Normalization (in Phenotype Prediction using Gene Data) |

barcode | Render Barcode Distribution Plots |

bardr | Complete Works of William Shakespeare in Tidy Format |

barplot3d | Create 3D Barplots |

bartBMA | Bayesian Additive Regression Trees using Bayesian Model Averaging |

bartCause | Causal Inference using Bayesian Additive Regression Trees |

bartMachine | Bayesian Additive Regression Trees |

bartMachineJARs | bartMachine JARs |

bartcs | Bayesian Additive Regression Trees for Confounder Selection |

basad | Bayesian Variable Selection with Shrinking and Diffusing Priors |

base.rms | Convert Regression Between Base Function and 'rms' Package |

base64 | Base64 Encoder and Decoder |

base64enc | Tools for base64 encoding |

base64url | Fast and URL-Safe Base64 Encoder and Decoder |

baseballDBR | Sabermetrics and Advanced Baseball Statistics |

baseballr | Acquiring and Analyzing Baseball Data |

basecamb | Utilities for Streamlined Data Import, Imputation and Modelling |

basedosdados | 'Base Dos Dados' R Client |

basefun | Infrastructure for Computing with Basis Functions |

baseline | Baseline Correction of Spectra |

basemaps | Accessing Spatial Basemaps in R |

basetheme | Themes for Base Graphics Plots |

basf | Plot Simple Features with 'base' Sensibilities |

basicMCMCplots | Trace Plots, Density Plots and Chain Comparisons for MCMC Samples |

basicspace | Recovering a Basic Space from Issue Scales |

basictabler | Construct Rich Tables for Output to 'HTML'/'Excel' |

basifoR | Retrieval and Processing of the Spanish National Forest Inventory |

basket | Basket Trial Analysis |

baskexact | Exact Calculation of Basket Trial Operating Characteristics |

bastah | Big Data Statistical Analysis for High-Dimensional Models |

batata | Managing Packages Removal and Installation |

batch | Batching Routines in Parallel and Passing Command-Line Arguments to R |

batchmeans | Consistent Batch Means Estimation of Monte Carlo Standard Errors |

batchmix | Semi-Supervised Bayesian Mixture Models Incorporating Batch Correction |

batchscr | Batch Script Helpers |

batchtma | Batch Effect Adjustments |

batchtools | Tools for Computation on Batch Systems |

bate | Computes Bias-Adjusted Treatment Effect |

batman | Convert Categorical Representations of Logicals to Actual Logicals |

batteryreduction | An R Package for Data Reduction by Battery Reduction |

bayMDS | Bayesian Multidimensional Scaling and Choice of Dimension |

baycn | Bayesian Inference for Causal Networks |

bayefdr | Bayesian Estimation and Optimisation of Expected False Discovery Rate |

bayes4psy | User Friendly Bayesian Data Analysis for Psychology |

bayesAB | Fast Bayesian Methods for AB Testing |

bayesCT | Simulation and Analysis of Adaptive Bayesian Clinical Trials |

bayesDP | Implementation of the Bayesian Discount Prior Approach for Clinical Trials |

bayesDccGarch | Methods and Tools for Bayesian Dynamic Conditional Correlation GARCH(1,1) Model |

bayesGAM | Fit Multivariate Response Generalized Additive Models using Hamiltonian Monte Carlo |

bayesGARCH | Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations |

bayesImageS | Bayesian Methods for Image Segmentation using a Potts Model |

bayesLife | Bayesian Projection of Life Expectancy |

bayesMRM | Bayesian Multivariate Receptor Modeling |

bayesPO | Bayesian Inference for Presence-Only Data |

bayesPop | Probabilistic Population Projection |

bayesQR | Bayesian Quantile Regression |

bayesSurv | Bayesian Survival Regression with Flexible Error and Random Effects Distributions |

bayesTFR | Bayesian Fertility Projection |

bayesZIB | Bayesian Zero-Inflated Bernoulli Regression Model |

bayesammi | Bayesian Estimation of the Additive Main Effects and Multiplicative Interaction Model |

bayesanova | Bayesian Inference in the Analysis of Variance via Markov Chain Monte Carlo in Gaussian Mixture Models |

bayesassurance | Bayesian Assurance Computation |

bayesbio | Miscellaneous Functions for Bioinformatics and Bayesian Statistics |

bayesboot | An Implementation of Rubin's (1981) Bayesian Bootstrap |

bayesbr | Beta Regression on a Bayesian Model |

bayescopulareg | Bayesian Copula Regression |

bayescount | Power Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC |

bayesdfa | Bayesian Dynamic Factor Analysis (DFA) with 'Stan' |

bayesdistreg | Bayesian Distribution Regression |

bayesforecast | Bayesian Time Series Modeling with Stan |

bayesian | Bindings for Bayesian TidyModels |

bayesianETAS | Bayesian Estimation of the ETAS Model for Earthquake Occurrences |

bayeslincom | Linear Combinations of Bayesian Posterior Samples |

bayeslm | Efficient Sampling for Gaussian Linear Regression with Arbitrary Priors |

bayesloglin | Bayesian Analysis of Contingency Table Data |

bayeslongitudinal | Adjust Longitudinal Regression Models Using Bayesian Methodology |

bayesm | Bayesian Inference for Marketing/Micro-Econometrics |

bayesmeta | Bayesian Random-Effects Meta-Analysis and Meta-Regression |

bayesmix | Bayesian Mixture Models with JAGS |

bayesmove | Non-Parametric Bayesian Analyses of Animal Movement |

bayesnec | A Bayesian No-Effect- Concentration (NEC) Algorithm |

bayesplay | The Bayes Factor Playground |

bayesplot | Plotting for Bayesian Models |

bayesreg | Bayesian Regression Models with Global-Local Shrinkage Priors |

bayesrules | Datasets and Supplemental Functions from Bayes Rules! Book |

bayess | Bayesian Essentials with R |

bayest | Effect Size Targeted Bayesian Two-Sample t-Tests via Markov Chain Monte Carlo in Gaussian Mixture Models |

bayestestR | Understand and Describe Bayesian Models and Posterior Distributions |

bayesvl | Visually Learning the Graphical Structure of Bayesian Networks and Performing MCMC with 'Stan' |

bayfoxr | Global Bayesian Foraminifera Core Top Calibration |

baymedr | Computation of Bayes Factors for Common Biomedical Designs |

baystability | Bayesian Stability Analysis of Genotype by Environment Interaction (GEI) |

baytrends | Long Term Water Quality Trend Analysis |

bazar | Miscellaneous Basic Functions |

bbdetection | Identification of Bull and Bear States of the Market |

bbknnR | Perform Batch Balanced KNN in R |

bbl | Boltzmann Bayes Learner |

bbmle | Tools for General Maximum Likelihood Estimation |

bbotk | Black-Box Optimization Toolkit |

bbreg | Bessel and Beta Regressions via Expectation-Maximization Algorithm for Continuous Bounded Data |

bbricks | Bayesian Methods and Graphical Model Structures for Statistical Modeling |

bbsBayes | Hierarchical Bayesian Analysis of North American BBS Data |

bbw | Blocked Weighted Bootstrap |

bc3net | Gene Regulatory Network Inference with Bc3net |

bcROCsurface | Bias-Corrected Methods for Estimating the ROC Surface of Continuous Diagnostic Tests |

bcTSNE | Projected t-SNE for Batch Correction |

bcaboot | Bias Corrected Bootstrap Confidence Intervals |

bccp | Bias Correction under Censoring Plan |

bcdata | Search and Retrieve Data from the BC Data Catalogue |

bcf | Causal Inference for a Binary Treatment and Continuous Outcome using Bayesian Causal Forests |

bcfrailph | Semiparametric Bivariate Correlated Frailty Models Fit |

bcfrailphdv | Bivariate Correlated Frailty Models with Varied Variances |

bcgam | Bayesian Constrained Generalised Linear Models |

bcmaps | Map Layers and Spatial Utilities for British Columbia |

bcmixed | Mixed Effect Model with the Box-Cox Transformation |

bcp | Bayesian Analysis of Change Point Problems |

bcpa | Behavioral Change Point Analysis of Animal Movement |

bcputility | Wrapper for SQL Server bcp Utility |

bcrm | Bayesian Continual Reassessment Method for Phase I Dose-Escalation Trials |

bcrypt | 'Blowfish' Password Hashing Algorithm |

bdDwC | Darwinizer: Darwin Core (DwC) Field Names Standardization |

bda | Binned Data Analysis |

bdc | Biodiversity Data Cleaning |

bdchecks | Biodiversity Data Checks |

bdclean | A User-Friendly Biodiversity Data Cleaning App for the Inexperienced R User |

bde | Bounded Density Estimation |

bdl | Interface and Tools for 'BDL' API |

bdlp | Transparent and Reproducible Artificial Data Generation |

bdots | Bootstrapped Differences of Time Series |

bdpar | Big Data Preprocessing Architecture |

bdpopt | Optimisation of Bayesian Decision Problems |

bdpv | Inference and Design for Predictive Values in Diagnostic Tests |

bdrc | Bayesian Discharge Rating Curves |

bdribs | Bayesian Detection of Potential Risk Using Inference on Blinded Safety Data |

bdscale | Remove Weekends and Holidays from ggplot2 Axes |

bdsmatrix | Routines for Block Diagonal Symmetric Matrices |

bdvis | Biodiversity Data Visualizations |

bea.R | Bureau of Economic Analysis API |

beadplexr | Analysis of Multiplex Cytometric Bead Assays |

beakr | A Minimalist Web Framework for R |

beam | Fast Bayesian Inference in Large Gaussian Graphical Models |

beanplot | Visualization via Beanplots (Like Boxplot/Stripchart/Violin Plot) |

beans | Data on Dried Beans |

beanz | Bayesian Analysis of Heterogeneous Treatment Effect |

bearishTrader | Trading Strategies for Bearish Outlook |

beast | Bayesian Estimation of Change-Points in the Slope of Multivariate Time-Series |

beastier | Call 'BEAST2' |

beautier | 'BEAUti' from R |

bedr | Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix' |

beepr | Easily Play Notification Sounds on any Platform |

beeswarm | The Bee Swarm Plot, an Alternative to Stripchart |

beezdemand | Behavioral Economic Easy Demand |

befproj | Makes a Local Population Projection |

beginr | Functions for R Beginners |

behaviorchange | Tools for Behavior Change Researchers and Professionals |

behavr | Canonical Data Structure for Behavioural Data |

belex | Download Historical Data from the Belgrade Stock Exchange |

belg | Boltzmann Entropy of a Landscape Gradient |

bellreg | Count Regression Models Based on the Bell Distribution |

bench | High Precision Timing of R Expressions |

benchmarkme | Crowd Sourced System Benchmarks |

benchmarkmeData | Data Set for the 'benchmarkme' Package |

benchr | High Precise Measurement of R Expressions Execution Time |

bender | Bender Client |

benford | Benford's Analysis on Large Data Sets |

benford.analysis | Benford Analysis for Data Validation and Forensic Analytics |

bentcableAR | Bent-Cable Regression for Independent Data or Autoregressive Time Series |

benthos | Marine Benthic Ecosystem Analysis |

berryFunctions | Function Collection Related to Plotting and Hydrology |

bestNormalize | Normalizing Transformation Functions |

bestSDP | Burden Estimate of Common Communicable Diseases in Settlements of Displaced Populations |

bestglm | Best Subset GLM and Regression Utilities |

besthr | Generating Bootstrap Estimation Distributions of HR Data |

bestridge | A Comprehensive R Package for Best Subset Selection |

betaBayes | Bayesian Beta Regression |

betaDelta | Confidence Intervals for Standardized Regression Coefficients |

betaMC | Monte Carlo Confidence Intervals for Standardized Regression Coefficients |

betaSandwich | Robust Confidence Intervals for Standardized Regression Coefficients |

betacal | Beta Calibration |

betaclust | A Family of Beta Mixture Models for Clustering Beta-Valued DNA Methylation Data |

betafunctions | Functions for Working with Two- And Four-Parameter Beta Probability Distributions and Psychometric Analysis of Classifications |

betapart | Partitioning Beta Diversity into Turnover and Nestedness Components |

betaper | Taxonomic Uncertainty on Multivariate Analyses of Ecological Data |

betareg | Beta Regression |

betategarch | Simulation, Estimation and Forecasting of Beta-Skew-t-EGARCH Models |

bethel | Bethel's algorithm. |

bets.covid19 | The BETS Model for Early Epidemic Data |

bettermc | Enhanced Fork-Based Parallelization |

beyondWhittle | Bayesian Spectral Inference for Stationary Time Series |

bezier | Toolkit for Bezier Curves and Splines |

bfast | Breaks for Additive Season and Trend |

bfp | Bayesian Fractional Polynomials |

bfsMaps | Plot Maps from Switzerland by Swiss Federal Statistical Office |

bfsl | Best-Fit Straight Line |

bfw | Bayesian Framework for Computational Modeling |

bgeva | Binary Generalized Extreme Value Additive Models |

bggAnalytics | BoardGameGeek's Board Game Data Analysis Tools |

bggum | Bayesian Estimation of Generalized Graded Unfolding Model Parameters |

bgmfiles | Example BGM Files for the Atlantis Ecosystem Model |

bgmm | Gaussian Mixture Modeling Algorithms and the Belief-Based Mixture Modeling |

bgsmtr | Bayesian Group Sparse Multi-Task Regression |

bgumbel | Bimodal Gumbel Distribution |

bgw | Bunch-Gay-Welsch Statistical Estimation |

bhm | Biomarker Threshold Models |

bhmbasket | Bayesian Hierarchical Models for Basket Trials |

bhpm | Bayesian Hierarchical Poisson Models for Multiple Grouped Outcomes with Clustering |

biClassify | Binary Classification Using Extensions of Discriminant Analysis |

bib2df | Parse a BibTeX File to a Data Frame |

biblio | Interacting with BibTeX Databases |

bibliometrix | Comprehensive Science Mapping Analysis |

bibliometrixData | Bibliometrix Example Datasets |

biblionetwork | Create Different Types of Bibliometric Networks |

bibs | Bayesian Inference for the Birnbaum-Saunders Distribution |

bibtex | Bibtex Parser |

biclust | BiCluster Algorithms |

biclustermd | Biclustering with Missing Data |

bidask | Efficient Estimation of Bid-Ask Spreads from Open, High, Low, and Close Prices |

bife | Binary Choice Models with Fixed Effects |

bifurcatingr | Bifurcating Autoregressive Models |

bigD | Flexibly Format Dates and Times to a Given Locale |

bigDM | Scalable Bayesian Disease Mapping Models for High-Dimensional Data |

bigGP | Distributed Gaussian Process Calculations |

bigMap | Big Data Mapping |

bigQF | Quadratic Forms in Large Matrices |

bigQueryR | Interface with Google BigQuery with Shiny Compatibility |

bigReg | Generalized Linear Models (GLM) for Large Data Sets |

bigSurvSGD | Big Survival Analysis Using Stochastic Gradient Descent |

bigalgebra | 'BLAS' and 'LAPACK' Routines for Native R Matrices and 'big.matrix' Objects |

biganalytics | Utilities for 'big.matrix' Objects from Package 'bigmemory' |

bigassertr | Assertion and Message Functions |

bigchess | Read, Write, Manipulate, Explore Chess PGN Files and R API to UCI Chess Engines |

bigdatadist | Distances for Machine Learning and Statistics in the Context of Big Data |

bigdist | Store Distance Matrices on Disk |

biglasso | Extending Lasso Model Fitting to Big Data |

bigleaf | Physical and Physiological Ecosystem Properties from Eddy Covariance Data |

biglm | Bounded Memory Linear and Generalized Linear Models |

biglmm | Bounded Memory Linear and Generalized Linear Models |

bigmatch | Making Optimal Matching Size-Scalable Using Optimal Calipers |

bigmds | Multidimensional Scaling for Big Data |

bigmemory | Manage Massive Matrices with Shared Memory and Memory-Mapped Files |

bigmemory.sri | A Shared Resource Interface for Bigmemory Project Packages |

bignum | Arbitrary-Precision Integer and Floating-Point Mathematics |

bigparallelr | Easy Parallel Tools |

bigreadr | Read Large Text Files |

bigrquery | An Interface to Google's 'BigQuery' 'API' |

bigsimr | Fast Generation of High-Dimensional Random Vectors |

bigsnpr | Analysis of Massive SNP Arrays |

bigsparser | Sparse Matrix Format with Data on Disk |

bigsplines | Smoothing Splines for Large Samples |

bigstatsr | Statistical Tools for Filebacked Big Matrices |

bigstep | Stepwise Selection for Large Data Sets |

bigtabulate | Table, Apply, and Split Functionality for Matrix and 'big.matrix' Objects |

bigtcr | Nonparametric Analysis of Bivariate Gap Time with Competing Risks |

bigtime | Sparse Estimation of Large Time Series Models |

bigutilsr | Utility Functions for Large-scale Data |

bikeshare14 | Bay Area Bike Share Trips in 2014 |

bikm1 | Co-Clustering Adjusted Rand Index and Bikm1 Procedure for Contingency and Binary Data-Sets |

bild | A Package for BInary Longitudinal Data |

billboard | Contains Data of Billboard Hot 100 Songs |

billboarder | Create Interactive Chart with the JavaScript 'Billboard' Library |

bimets | Time Series and Econometric Modeling |

binGroup | Evaluation and Experimental Design for Binomial Group Testing |

binGroup2 | Identification and Estimation using Group Testing |

binMto | Many-to-One Comparisons of Proportions |

binancer | API Client to 'Binance' |

binaryGP | Fit and Predict a Gaussian Process Model with (Time-Series) Binary Response |

binaryMM | Flexible Marginalized Models for Binary Correlated Outcomes |

binaryTimeSeries | Analyzes a Binary Variable During a Time Series |

binb | 'binb' is not 'Beamer' |

binda | Multi-Class Discriminant Analysis using Binary Predictors |

bindata | Generation of Artificial Binary Data |

bindr | Parametrized Active Bindings |

bindrcpp | An 'Rcpp' Interface to Active Bindings |

binequality | Methods for Analyzing Binned Income Data |

binford | Binford's Hunter-Gatherer Data |

binfunest | Estimates Parameters of Functions Driving Binomial Random Variables |

bingadsR | Get Bing Ads Data via the 'Windsor.ai' API |

bingat | Binary Graph Analysis Tools |

binhf | Haar-Fisz Functions for Binomial Data |

binman | A Binary Download Manager |

binom | Binomial Confidence Intervals for Several Parameterizations |

binomSamSize | Confidence Intervals and Sample Size Determination for a Binomial Proportion under Simple Random Sampling and Pooled Sampling |

binomialRF | Binomial Random Forest Feature Selection |

binomialtrend | Calculates the Statistical Significance of a Trend in a Set of Measurements |

binovisualfields | Depth-Dependent Binocular Visual Fields Simulation |

binr | Cut Numeric Values into Evenly Distributed Groups |

binsegRcpp | Efficient Implementation of Binary Segmentation |

binseqtest | Exact Binary Sequential Designs and Analysis |

binsmooth | Generate PDFs and CDFs from Binned Data |

binspp | Bayesian Inference for Neyman-Scott Point Processes |

binsreg | Binscatter Estimation and Inference |

binst | Data Preprocessing, Binning for Classification and Regression |

bio.infer | Predict Environmental Conditions from Biological Observations |

bio3d | Biological Structure Analysis |

bioC.logs | BioConductor Package Downloads Stats |

bioOED | Sensitivity Analysis and Optimum Experiment Design for Microbial Inactivation |

bioPN | Simulation of deterministic and stochastic biochemical reaction networks using Petri Nets |

bioRad | Biological Analysis and Visualization of Weather Radar Data |

bioacoustics | Analyse Audio Recordings and Automatically Extract Animal Vocalizations |

bioassays | Summarising Multi Well Plate Cellular Assay |

bioclim | Bioclimatic Analysis and Classification |

biocompute | Create and Manipulate BioCompute Objects |

biodosetools | An R Shiny Application for Biological Dosimetry |

biogas | Process Biogas Data and Predict Biogas Production |

biogeo | Point Data Quality Assessment and Coordinate Conversion |

biogeom | Biological Geometries |

biogram | N-Gram Analysis of Biological Sequences |

biogrowth | Modelling of Population Growth |

bioimagetools | Tools for Microscopy Imaging |

bioinactivation | Mathematical Modelling of (Dynamic) Microbial Inactivation |

biokNN | Bi-Objective k-Nearest Neighbors Imputation for Multilevel Data |

biolink | Create Hyperlinks to Biological Databases and Resources |

biomartr | Genomic Data Retrieval |

biometryassist | Functions to Assist Design and Analysis of Agronomic Experiments |

biomod2 | Ensemble Platform for Species Distribution Modeling |

bionetdata | Biological and Chemical Data Networks |

bios2mds | From Biological Sequences to Multidimensional Scaling |

biosensors.usc | Distributional Data Analysis Techniques for Biosensor Data |

bioseq | A Toolbox for Manipulating Biological Sequences |

biosignalEMG | Tools for Electromyogram Signals (EMG) Analysis |

biospear | Biomarker Selection in Penalized Regression Models |

biostat3 | Utility Functions, Datasets and Extended Examples for Survival Analysis |

biosurvey | Tools for Biological Survey Planning |

biotic | Calculation of Freshwater Biotic Indices |

biotools | Tools for Biometry and Applied Statistics in Agricultural Science |

bipartite | Visualising Bipartite Networks and Calculating Some (Ecological) Indices |

bipartiteD3 | Interactive Bipartite Graphs |

bipd | Bayesian Individual Patient Data Meta-Analysis using 'JAGS' |

biplotbootGUI | Bootstrap on Classical Biplots and Clustering Disjoint Biplot |

birankr | Ranking Nodes in Bipartite and Weighted Networks |

birdring | Methods to Analyse Ring Re-Encounter Data |

birk | MA Birk's Functions |

birtr | The R Package for "The Basics of Item Response Theory Using R" |

biscale | Tools and Palettes for Bivariate Thematic Mapping |

bisectr | Tools to find bad commits with git bisect |

bisque | Approximate Bayesian Inference via Sparse Grid Quadrature Evaluation (BISQuE) for Hierarchical Models |

bistablehistory | Cumulative History Analysis for Bistable Perception Time Series |

bit | Classes and Methods for Fast Memory-Efficient Boolean Selections |

bit64 | A S3 Class for Vectors of 64bit Integers |

bite | Bayesian Integrative Models of Trait Evolution |

bitmexr | R Client for BitMEX |

bitops | Bitwise Operations |

bitsqueezr | Quantize Floating-Point Numbers for Improved Compressibility |

bittermelon | Monochrome Bitmap Font Tools |

bivariatemaps | Creates Bivariate Maps |

bivgeom | Roy's Bivariate Geometric Distribution |

bivrp | Bivariate Residual Plots with Simulation Polygons |

biwavelet | Conduct Univariate and Bivariate Wavelet Analyses |

biwt | Compute the Biweight Mean Vector and Covariance & Correlation Matrice |

bizdays | Business Days Calculations and Utilities |

bizicount | Bivariate Zero-Inflated Count Models Using Copulas |

bjscrapeR | An API Wrapper for the Bureau of Justice Statistics (BJS) |

bkmr | Bayesian Kernel Machine Regression |

bkmrhat | Parallel Chain Tools for Bayesian Kernel Machine Regression |

blackbox | Black Box Optimization and Exploration of Parameter Space |

blaise | Read and Write FWF Files in the 'Blaise' Format |

blandr | Bland-Altman Method Comparison |

blapsr | Bayesian Inference with Laplace Approximations and P-Splines |

blastula | Easily Send HTML Email Messages |

blatent | Bayesian Latent Variable Models |

blavaan | Bayesian Latent Variable Analysis |

blendedLink | A New Link Function that Blends Two Specified Link Functions |

blender | Analyze biotic homogenization of landscapes |

blindrecalc | Blinded Sample Size Recalculation |

blindreview | Blind Review Using Forward Search Procedures |

blink | Record Linkage for Empirically Motivated Priors |

bliss | Bayesian Functional Linear Regression with Sparse Step Functions |

blm | Binomial Linear Regression |

blme | Bayesian Linear Mixed-Effects Models |

blmeco | Data Files and Functions Accompanying the Book "Bayesian Data Analysis in Ecology using R, BUGS and Stan" |

blob | A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS') |

blockCV | Spatial and Environmental Blocking for K-Fold Cross-Validation |

blockForest | Block Forests: Random Forests for Blocks of Clinical and Omics Covariate Data |

blockcluster | Co-Clustering Package for Binary, Categorical, Contingency and Continuous Data-Sets |

blocklength | Select an Optimal Block-Length to Bootstrap Dependent Data (Block Bootstrap) |

blockmatrix | blockmatrix: Tools to solve algebraic systems with partitioned matrices |

blockmodeling | Generalized and Classical Blockmodeling of Valued Networks |

blockmodels | Latent and Stochastic Block Model Estimation by a 'V-EM' Algorithm |

blockrand | Randomization for Block Random Clinical Trials |

blocksdesign | Nested and Crossed Block Designs for Factorial and Unstructured Treatment Sets |

blocs | Estimate and Visualize Voting Blocs' Partisan Contributions |

blogdown | Create Blogs and Websites with R Markdown |

blorr | Tools for Developing Binary Logistic Regression Models |

blrm | Dose Escalation Design in Phase I Oncology Trial Using Bayesian Logistic Regression Modeling |

blsR | Make Requests from the Bureau of Labor Statistics API |

blscrapeR | An API Wrapper for the Bureau of Labor Statistics (BLS) |

bltm | Bayesian Latent Threshold Modeling |

bluebike | Blue Bike Comprehensive Data |

bmabasket | Bayesian Model Averaging for Basket Trials |

bmass | Bayesian Multivariate Analysis of Summary Statistics |

bmem | Mediation Analysis with Missing Data Using Bootstrap |

bmemLavaan | Mediation Analysis with Missing Data and Non-Normal Data |

bmgarch | Bayesian Multivariate GARCH Models |

bmggum | Bayesian Multidimensional Generalized Graded Unfolding Model |

bmixture | Bayesian Estimation for Finite Mixture of Distributions |

bmlm | Bayesian Multilevel Mediation |

bmp | Read Windows Bitmap (BMP) Images |

bmrm | Bundle Methods for Regularized Risk Minimization Package |

bmscstan | Bayesian Multilevel Single Case Models using 'Stan' |

bmstdr | Bayesian Modeling of Spatio-Temporal Data with R |

bnClustOmics | Bayesian Network-Based Clustering of Multi-Omics Data |

bnclassify | Learning Discrete Bayesian Network Classifiers from Data |

bndovb | Bounding Omitted Variable Bias Using Auxiliary Data |

bnlearn | Bayesian Network Structure Learning, Parameter Learning and Inference |

bnma | Bayesian Network Meta-Analysis using 'JAGS' |

bnmonitor | An Implementation of Sensitivity Analysis in Bayesian Networks |

bnnSurvival | Bagged k-Nearest Neighbors Survival Prediction |

bnpa | Bayesian Networks & Path Analysis |

bnpsd | Simulate Genotypes from the BN-PSD Admixture Model |

bnspatial | Spatial Implementation of Bayesian Networks and Mapping |

bnstruct | Bayesian Network Structure Learning from Data with Missing Values |

bnviewer | Bayesian Networks Interactive Visualization and Explainable Artificial Intelligence |

boa | Bayesian Output Analysis Program (BOA) for MCMC |

bodenmiller | Profiling of Peripheral Blood Mononuclear Cells using CyTOF |

bodycomp | Percent Body Fat Values Using Anthropometric Prediction Equations |

boilerpipeR | Interface to the Boilerpipe Java Library |

bolasso | Model Consistent Lasso Estimation Through the Bootstrap |

bold | Interface to Bold Systems API |

bondAnalyst | Methods for Fixed-Income Valuation, Risk and Return |

bonsai | Model Wrappers for Tree-Based Models |

bookdown | Authoring Books and Technical Documents with R Markdown |

bookdownplus | Generate Assorted Books and Documents with R 'bookdown' Package |

boostmtree | Boosted Multivariate Trees for Longitudinal Data |

boot | Bootstrap Functions (Originally by Angelo Canty for S) |

boot.heterogeneity | A Bootstrap-Based Heterogeneity Test for Meta-Analysis |

boot.pval | Bootstrap p-Values |

bootCT | Bootstrapping the ARDL Tests for Cointegration |

bootComb | Combine Parameter Estimates via Parametric Bootstrap |

bootES | Bootstrap Confidence Intervals on Effect Sizes |

bootGOF | Bootstrap Based Goodness-of-Fit Tests |

bootImpute | Bootstrap Inference for Multiple Imputation |

bootLR | Bootstrapped Confidence Intervals for (Negative) Likelihood Ratio Tests |

bootPLS | Bootstrap Hyperparameter Selection for PLS Models and Extensions |

bootSVD | Fast, Exact Bootstrap Principal Component Analysis for High Dimensional Data |

bootStepAIC | Bootstrap stepAIC |

bootUR | Bootstrap Unit Root Tests |

bootcluster | Bootstrapping Estimates of Clustering Stability |

bootf2 | Simulation and Comparison of Dissolution Profiles |

bootnet | Bootstrap Methods for Various Network Estimation Routines |

bootruin | A Bootstrap Test for the Probability of Ruin in the Classical Risk Process |

bootstrap | Functions for the Book "An Introduction to the Bootstrap" |

bootstrapFP | Bootstrap Algorithms for Finite Population Inference |

bor | Transforming Behavioral Observation Records into Data Matrices |

boral | Bayesian Ordination and Regression AnaLysis |

borrowr | Estimate Causal Effects with Borrowing Between Data Sources |

botor | 'AWS Python SDK' ('boto3') for R |

boundingbox | Create a Bounding Box in an Image |

boussinesq | Analytic Solutions for (Ground-Water) Boussinesq Equation |

boutliers | Outlier Detection and Influence Diagnostics for Meta-Analysis |

box | Write Reusable, Composable and Modular R Code |

boxfilter | Filter Noisy Data |

boxplotdbl | Double Box Plot for Two-Axes Correlation |

boxr | Interface for the 'Box.com API' |

bp | Blood Pressure Analysis in R |

bpAcc | Blood Pressure Device Accuracy Evaluation: Statistical Considerations |

bpDir | Boxplots for Directional Data |

bpa | Basic Pattern Analysis |

bpbounds | Nonparametric Bounds for the Average Causal Effect Due to Balke and Pearl and Extensions |

bpca | Biplot of Multivariate Data Based on Principal Components Analysis |

bpcp | Beta Product Confidence Procedure for Right Censored Data |

bpgmm | Bayesian Model Selection Approach for Parsimonious Gaussian Mixture Models |

bpnreg | Bayesian Projected Normal Regression Models for Circular Data |

bpp | Computations Around Bayesian Predictive Power |

bpr | Fitting Bayesian Poisson Regression |

bqror | Bayesian Quantile Regression for Ordinal Models |

bqtl | Bayesian QTL Mapping Toolkit |

braQCA | Bootstrapped Robustness Assessment for Qualitative Comparative Analysis |

bracer | Brace Expansions |

brada | Bayesian Response-Adaptive Design Analysis |

braggR | Calculate the Revealed Aggregator of Probability Predictions |

braidReports | Visualize Combined Action Response Surfaces and Report BRAID Analyses |

braidrm | Fitting Dose Response with the BRAID Combined Action Model |

brainGraph | Graph Theory Analysis of Brain MRI Data |

brainKCCA | Region-Level Connectivity Network Construction via Kernel Canonical Correlation Analysis |

brainR | Helper Functions to 'misc3d' and 'rgl' Packages for Brain Imaging |

brandwatchR | 'Brandwatch' API to R |

brant | Test for Parallel Regression Assumption |

brassica | 1970s BASIC Interpreter |

bravo | Bayesian Screening and Variable Selection |

brea | Bayesian Recurrent Event Analysis |

bread | Analyze Big Files Without Loading Them in Memory |

breakDown | Model Agnostic Explainers for Individual Predictions |

breakaway | Species Richness Estimation and Modeling |

breakfast | Methods for Fast Multiple Change-Point Detection and Estimation |

breakpoint | An R Package for Multiple Break-Point Detection via the Cross-Entropy Method |

breathtestcore | Core Functions to Read and Fit 13c Time Series from Breath Tests |

breathteststan | Stan-Based Fit to Gastric Emptying Curves |

brew | Templating Framework for Report Generation |

brglm | Bias Reduction in Binomial-Response Generalized Linear Models |

brglm2 | Bias Reduction in Generalized Linear Models |

briKmeans | Package for Brik, Fabrik and Fdebrik Algorithms to Initialise Kmeans |

bridgedist | An Implementation of the Bridge Distribution with Logit-Link as in Wang and Louis (2003) |

bridger | Bridge Hand Generator with Criteria Selector |

bridger2 | Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data |

bridgesampling | Bridge Sampling for Marginal Likelihoods and Bayes Factors |

brif | A Tree and Forest Tool for Classification and Regression |

brinton | A Graphical EDA Tool |

brio | Basic R Input Output |

briqr | Interface to the 'Briq' API |

brisk | Bayesian Benefit Risk Analysis |

briskaR | Biological Risk Assessment |

brlrmr | Bias Reduction with Missing Binary Response |

brm | Binary Regression Model |

brms | Bayesian Regression Models using 'Stan' |

brmsmargins | Bayesian Marginal Effects for 'brms' Models |

brnn | Bayesian Regularization for Feed-Forward Neural Networks |

brokenstick | Broken Stick Model for Irregular Longitudinal Data |

brolgar | Browse Over Longitudinal Data Graphically and Analytically in R |

broman | Karl Broman's R Code |

broom | Convert Statistical Objects into Tidy Tibbles |

broom.helpers | Helpers for Model Coefficients Tibbles |

broom.mixed | Tidying Methods for Mixed Models |

brotli | A Compression Format Optimized for the Web |

brpop | Brazilian Population Estimatives |

brr | Bayesian Inference on the Ratio of Two Poisson Rates |

brranching | Fetch 'Phylogenies' from Many Sources |

bruceR | Broadly Useful Convenient and Efficient R Functions |

brulee | High-Level Modeling Functions with 'torch' |

brunnermunzel | (Permuted) Brunner-Munzel Test |

brxx | Bayesian Test Reliability Estimation |

bs4Dash | A 'Bootstrap 4' Version of 'shinydashboard' |

bs4cards | Generate Bootstrap Cards |

bsTools | Create HTML Content with Bootstrap 5 Classes and Layouts |

bsam | Bayesian State-Space Models for Animal Movement |

bsamGP | Bayesian Spectral Analysis Models using Gaussian Process Priors |

bsearchtools | Binary Search Tools |

bshazard | Nonparametric Smoothing of the Hazard Function |

bsicons | Easily Work with 'Bootstrap' Icons |

bslib | Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown' |

bsnsing | Build Decision Trees with Optimal Multivariate Splits |

bspec | Bayesian Spectral Inference |

bspline | B-Spline Interpolation and Regression |

bsplinePsd | Bayesian Nonparametric Spectral Density Estimation Using B-Spline Priors |

bsplus | Adds Functionality to the R Markdown + Shiny Bootstrap Framework |

bspm | Bridge to System Package Manager |

bspmma | Bayesian Semiparametric Models for Meta-Analysis |

bsreg | Bayesian Spatial Regression Models |

bssm | Bayesian Inference of Non-Linear and Non-Gaussian State Space Models |

bssn | Birnbaum-Saunders Model |

bst | Gradient Boosting |

bstrl | Bayesian Streaming Record Linkage |

bsts | Bayesian Structural Time Series |

bsub | Submitter and Monitor of the 'LSF Cluster' |

bsvars | Bayesian Estimation of Structural Vector Autoregressive Models |

btb | Beyond the Border - Kernel Density Estimation for Urban Geography |

btergm | Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood |

bubblyr | Beautiful Bubbles for 'shiny' and 'rmarkdown' Backgrounds |

bucky | Bucky's Archive for Data Analysis in the Social Sciences |

buildmer | Stepwise Elimination and Term Reordering for Mixed-Effects Regression |

buildr | Organize & Run Build Scripts Comfortably |

bujar | Buckley-James Regression for Survival Data with High-Dimensional Covariates |

bulkAnalyseR | Interactive Shiny App for Bulk Sequencing Data |

bulletcp | Automatic Groove Identification via Bayesian Changepoint Detection |

bulletr | Algorithms for Matching Bullet Lands |

bullishTrader | Bullish Trading Strategies Through Graphs |

bullwhipgame | Bullwhip Effect Demo in Shiny |

bumbl | Tools for Modeling Bumblebee Colony Growth and Decline |

bumblebee | Quantify Disease Transmission Within and Between Population Groups |

bunching | Estimate Bunching |

bunchr | Analyze Bunching in a Kink or Notch Setting |

bundesbank | Download Data from Bundesbank |

bundesligR | All Final Tables of the Bundesliga |

bundle | Serialize Model Objects with a Consistent Interface |

bupaR | Business Process Analysis in R |

bupaverse | Easily Install and Load the 'bupaverse' |

burnr | Forest Fire History Analysis |

bursts | Markov Model for Bursty Behavior in Streams |

busdater | Standard Date Calculations for Business |

butcher | Model Butcher |

butterflyOptions | Trading Butterfly Options Strategies |

bvarsv | Bayesian Analysis of a Vector Autoregressive Model with Stochastic Volatility and Time-Varying Parameters |

bvartools | Bayesian Inference of Vector Autoregressive and Error Correction Models |

bvls | The Stark-Parker algorithm for bounded-variable least squares |

bvpSolve | Solvers for Boundary Value Problems of Differential Equations |

bwd | Backward Procedure for Change-Point Detection |

bwimage | Describe Image Patterns in Natural Structures |

bws | Bayesian Weighted Sums |

bwsTools | Tools for Case 1 Best-Worst Scaling (MaxDiff) Designs |

bysykkel | Get City Bike Data from Norway |

bytescircle | Statistics About Bytes Contained in a File as a Circle Plot |

bzinb | Bivariate Zero-Inflated Negative Binomial Model Estimator |

C19dNUTS | Dataset of Regional COVID-19 Deaths per 100,000 Pop (NUTS) |

C443 | See a Forest for the Trees |

C50 | C5.0 Decision Trees and Rule-Based Models |

CA3variants | Three-Way Correspondence Analysis Variants |

CACIMAR | Cross-Species Analysis of Cell Identities, Markers and Regulations |

CADFtest | A Package to Perform Covariate Augmented Dickey-Fuller Unit Root Tests |

CADStat | Provides a GUI to Several Statistical Methods |

CAISEr | Comparison of Algorithms with Iterative Sample Size Estimation |

CALANGO | Comparative Analysis with Annotation-Based Genomic Components |

CALF | Coarse Approximation Linear Function |

CALIBERrfimpute | Multiple Imputation Using MICE and Random Forest |

CAMAN | Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN |

CAMML | Cell-Typing using Variance Adjusted Mahalanobis Distances with Multi-Labeling |

CANSIM2R | Directly Extracts Complete CANSIM Data Tables |

CARBayes | Spatial Generalised Linear Mixed Models for Areal Unit Data |

CARBayesST | Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data |

CARBayesdata | Data Used in the Vignettes Accompanying the CARBayes and CARBayesST Packages |

CARME | CAR-MM Modelling in Stan |

CARRoT | Predicting Categorical and Continuous Outcomes Using One in Ten Rule |

CARlasso | Conditional Autoregressive LASSO |

CASCORE | Covariate Assisted Spectral Clustering on Ratios of Eigenvectors |

CASMAP | Detection of Statistically Significant Combinations of SNPs in Association Mapping |

CASMI | 'CASMI'-Based Functions |

CAST | 'caret' Applications for Spatial-Temporal Models |

CATT | The Cochran-Armitage Trend Test |

CATTexact | Computation of the p-Value for the Exact Conditional Cochran-Armitage Trend Test |

CAinterprTools | Graphical Aid in Correspondence Analysis Interpretation and Significance Testings |

CAvariants | Correspondence Analysis Variants |

CB2 | CRISPR Pooled Screen Analysis using Beta-Binomial Test |

CBCgrps | Compare Baseline Characteristics Between Groups |

CBPS | Covariate Balancing Propensity Score |

CBSr | Fits Cubic Bezier Spline Functions to Intertemporal and Risky Choice Data |

CBT | Confidence Bound Target Algorithm |

CC | Control Charts |

CCA | Canonical Correlation Analysis |

CCAMLRGIS | Antarctic Spatial Data Manipulation |

CCM | Correlation Classification Method |

CCP | Significance Tests for Canonical Correlation Analysis (CCA) |

CCTpack | Consensus Analysis, Model-Based Clustering, and Cultural Consensus Theory Applications |

CCWeights | Perform Weighted Linear Regression for Calibration Curve |

CDFt | Downscaling and Bias Correction via Non-Parametric CDF-Transform |

CDLasso | Coordinate Descent Algorithms for Lasso Penalized L1, L2, and Logistic Regression |

CDM | Cognitive Diagnosis Modeling |

CDMConnector | Connect to an OMOP Common Data Model |

CDNmoney | Components of Canadian Monetary and Credit Aggregates |

CDROM | Phylogenetically Classifies Retention Mechanisms of Duplicate Genes from Gene Expression Data |

CDSS | Course-Dependent Skill Structures |

CDVineCopulaConditional | Sampling from Conditional C- and D-Vine Copulas |

CDatanet | Modeling Count Data with Peer Effects |

CEC | Cross-Entropy Clustering |

CEDA | CRISPR Screen and Gene Expression Differential Analysis |

CEDARS | Simple and Efficient Pipeline for Electronic Health Record Annotation |

CEGO | Combinatorial Efficient Global Optimization |

CENFA | Climate and Ecological Niche Factor Analysis |

CEOdata | Datasets of the CEO (Centre d'Estudis d'Opinio) for Opinion Polls in Catalonia |

CERFIT | Causal Effect Random Forest of Interaction Tress |

CEoptim | Cross-Entropy R Package for Optimization |

CFAcoop | Colony Formation Assay: Taking into Account Cellular Cooperation |

CFC | Cause-Specific Framework for Competing-Risk Analysis |

CFF | Simple Similarity for User-Based Collaborative Filtering Systems |

CFilt | Collaborative Filtering by Reference Classes |

CGE | Computing General Equilibrium |

CGGP | Composite Grid Gaussian Processes |

CGManalyzer | Continuous Glucose Monitoring Data Analyzer |

CGNM | Cluster Gauss-Newton Method |

CGP | Composite Gaussian Process Models |

CGPfunctions | Powell Miscellaneous Functions for Teaching and Learning Statistics |

CHFF | Closest History Flow Field Forecasting for Bivariate Time Series |

CHMM | Coupled Hidden Markov Models |

CHNCapitalStock | Compute Chinese Capital Stocks |

CHNOSZ | Thermodynamic Calculations and Diagrams for Geochemistry |

CHOIRBM | Plots the CHOIR Body Map |

CHsharp | Choi and Hall Style Data Sharpening |

CIAAWconsensus | Isotope Ratio Meta-Analysis |

CIARA | Cluster Independent Algorithm for Rare Cell Types Identification |

CICA | Clusterwise Independent Component Analysis |

CIDER | Meta-Clustering for Single-Cell Data Integration and Evaluation |

CIEE | Estimating and Testing Direct Effects in Directed Acyclic Graphs using Estimating Equations |

CIM | Compositional Impact of Migration |

CIMTx | Causal Inference for Multiple Treatments with a Binary Outcome |

CINE | Classification International Normalized of Education |

CINID | Curculionidae INstar IDentification |

CINNA | Deciphering Central Informative Nodes in Network Analysis |

CINmetrics | Calculate Chromosomal Instability Metrics |

CIPerm | Computationally-Efficient Confidence Intervals for Mean Shift from Permutation Methods |

CIS.DGLM | Covariates, Interaction, and Selection for DGLM |

CITAN | CITation ANalysis Toolpack |

CIplot | Functions to Plot Confidence Interval |

CJAMP | Copula-Based Joint Analysis of Multiple Phenotypes |

CJIVE | Canonical Joint and Individual Variation Explained (CJIVE) |

CKAT | Composite Kernel Association Test for Pharmacogenetics Studies |

CKLRT | Composite Kernel Machine Regression Based on Likelihood Ratio Test |

CKMRpop | Forward-in-Time Simulation and Tallying of Pairwise Relationships |

CLA | Critical Line Algorithm in Pure R |

CLAST | Exact Confidence Limits after a Sequential Trial |

CLME | Constrained Inference for Linear Mixed Effects Models |

CLONETv2 | Clonality Estimates in Tumor |

CLUSTShiny | Interactive Document for Working with Cluster Analysis |

CLVTools | Tools for Customer Lifetime Value Estimation |

CMAPSS | Commercial Modular Aero-Propulsion System Simulation Data Set |

CMF | Collective Matrix Factorization |

CMFsurrogate | Calibrated Model Fusion Approach to Combine Surrogate Markers |

CMHNPA | Cochran-Mantel-Haenszel and Nonparametric ANOVA |

CMLS | Constrained Multivariate Least Squares |

CMMs | Compositional Mediation Model |

CMShiny | Interactive Document for Working with Confusion Matrix |

CMapViz | Representation Tool For Output Of Connectivity Map (CMap) Analysis |

CMplot | Circle Manhattan Plot |

CNAIM | Common Network Asset Indices Methodology (CNAIM) |

CNLTreg | Complex-Valued Wavelet Lifting for Signal Denoising |

CNLTtsa | Complex-Valued Wavelet Lifting for Univariate and Bivariate Time Series Analysis |

CNPS | Nonparametric Statistics |

CNVRG | Dirichlet Multinomial Modeling of Relative Abundance Data |

CNVScope | A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization |

CNprep | Pre-Process DNA Copy Number (CN) Data for Detection of CN Events |

COCONUT | COmbat CO-Normalization Using conTrols (COCONUT) |

COINr | Composite Indicator Construction and Analysis |

COLP | Causal Discovery for Categorical Data with Label Permutation |

COMBAT | A Combined Association Test for Genes using Summary Statistics |

COMIX | Coarsened Mixtures of Hierarchical Skew Kernels |

COMPoissonReg | Conway-Maxwell Poisson (COM-Poisson) Regression |

CONCUR | Copy Number Profile Curve-Based Association Test |

COR | The COR for Optimal Subset Selection in Distributed Estimation |

CORE | Cores of Recurrent Events |

CORElearn | Classification, Regression and Feature Evaluation |

COST | Copula-Based Semiparametric Models for Spatio-Temporal Data |

COUNT | Functions, Data and Code for Count Data |

COVID19 | R Interface to COVID-19 Data Hub |

COVIDIBGE | Downloading, Reading and Analyzing PNAD COVID19 Microdata |

CP | Conditional Power Calculations |

CPAT | Change Point Analysis Tests |

CPBayes | Bayesian Meta Analysis for Studying Cross-Phenotype Genetic Associations |

CPC | Implementation of Cluster-Polarization Coefficient |

CPGLIB | Competing Proximal Gradients Library |

CPMCGLM | Correction of the P-Value after Multiple Coding in Generalized Linear Models |

CPNCoverageAnalysis | Conceptual Properties Norming Studies as Parameter Estimation |

CPP | Composition of Probabilistic Preferences (CPP) |

CPsurv | Nonparametric Change Point Estimation for Survival Data |

CR2 | Compute Cluster Robust Standard Errors with Degrees of Freedom Adjustments |

CRABS | Congruent Rate Analyses in Birth-Death Scenarios |

CRANsearcher | RStudio Addin for Searching Packages in CRAN Database Based on Keywords |

CRE | Interpretable Subgroups Identification Through Ensemble Learning of Causal Rules |

CREAM | Clustering of Genomic Regions Analysis Method |

CREDS | Calibrated Ratio Estimator under Double Sampling Design |

CRF | Conditional Random Fields |

CRM | Continual Reassessment Method (CRM) for Phase I Clinical Trials |

CRMetrics | Cell Ranger Output Filtering and Metrics Visualization |

CRTConjoint | Conditional Randomization Testing (CRT) Approach for Conjoint Analysis |

CRTSize | Sample Size Estimation Functions for Cluster Randomized Trials |

CRTgeeDR | Doubly Robust Inverse Probability Weighted Augmented GEE Estimator |

CRWRM | Changing the Reference Group without Re-Running the Model |

CSCDRNA | Covariance Based Single-Cell Decomposition of Bulk Expression Data |

CSCNet | Fitting and Tuning Regularized Cause-Specific Cox Models with Elastic-Net Penalty |

CSESA | CRISPR-Based Salmonella Enterica Serotype Analyzer |

CSFA | Connectivity Scores with Factor Analysis |

CSGo | Collecting Counter Strike Global Offensive Data |

CSHShydRology | Canadian Hydrological Analyses |

CSIndicators | Climate Services' Indicators Based on Sub-Seasonal to Decadal Predictions |

CSMES | Cost-Sensitive Multi-Criteria Ensemble Selection for Uncertain Cost Conditions |

CSTE | Covariate Specific Treatment Effect (CSTE) Curve |

CSTools | Assessing Skill of Climate Forecasts on Seasonal-to-Decadal Timescales |

CSclone | Bayesian Nonparametric Modeling in R |

CSeqpat | Frequent Contiguous Sequential Pattern Mining of Text |

CTAShiny | Interactive Application for Working with Contingency Tables |

CTM | A Text Mining Toolkit for Chinese Document |

CTNote | CTN Outcomes, Treatments, and Endpoints |

CTP | Closed Testing Procedure (CTP) |

CTShiny | Interactive Document for Working with Classification Tree Analysis |

CTShiny2 | Interactive Document for Working with Classification Tree Analysis |

CTT | Classical Test Theory Functions |

CTTShiny | Classical Test Theory via Shiny |

CTTinShiny | Shiny Interface for the CTT Package |

CUB | A Class of Mixture Models for Ordinal Data |

CUFF | Charles's Utility Function using Formula |

CUMP | Analyze Multivariate Phenotypes by Combining Univariate Results |

CUSUMdesign | Compute Decision Interval and Average Run Length for CUSUM Charts |

CVD | Color Vision Deficiencies |

CVEK | Cross-Validated Kernel Ensemble |

CVR | Canonical Variate Regression |

CVST | Fast Cross-Validation via Sequential Testing |

CVThresh | Level-Dependent Cross-Validation Thresholding |

CVXR | Disciplined Convex Optimization |

CVglasso | Lasso Penalized Precision Matrix Estimation |

CVrisk | Compute Risk Scores for Cardiovascular Diseases |

CaDENCE | Conditional Density Estimation Network Construction and Evaluation |

CaPO4Sim | A Virtual Patient Simulator in the Context of Calcium and Phosphate Homeostasis |

Cairo | R Graphics Device using Cairo Graphics Library for Creating High-Quality Bitmap (PNG, JPEG, TIFF), Vector (PDF, SVG, PostScript) and Display (X11 and Win32) Output |

CalSim | The Calibration Simplex |

Calculator.LR.FNs | Calculator for LR Fuzzy Numbers |

CalibratR | Mapping ML Scores to Calibrated Predictions |

CalibrateSSB | Weighting and Estimation for Panel Data with Non-Response |

CalibrationCurves | Calibration Performance |

CamelUp | 'CamelUp' Board Game as a Teaching Aid for Introductory Statistics |

CancerEvolutionVisualization | Publication Quality Phylogenetic Tree Plots |

CancerGram | Prediction of Anticancer Peptides |

Canek | Batch Correction of Single Cell Transcriptome Data |

Canopy | Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing |

CarletonStats | Functions for Statistics Classes at Carleton College |

Carlson | Carlson Elliptic Integrals and Incomplete Elliptic Integrals |

Cascade | Selection, Reverse-Engineering and Prediction in Cascade Networks |

CascadeData | Experimental Data of Cascade Experiments in Genomics |

CatDataAnalysis | Datasets for Categorical Data Analysis by Agresti |

CatDyn | Fishery Stock Assessment by Catch Dynamics Models |

CatEncoders | Encoders for Categorical Variables |

CatPredi | Optimal Categorisation of Continuous Variables in Prediction Models |

CatReg | Solution Paths for Linear and Logistic Regression Models with Categorical Predictors, with SCOPE Penalty |

CatastRo | Interface to the API 'Sede Electronica Del Catastro' |

CauchyCP | Powerful Test for Survival Data under Non-Proportional Hazards |

CausCor | Calculate Correlations and Estimate Causality |

CausalGAM | Estimation of Causal Effects with Generalized Additive Models |

CausalGPS | Matching on Generalized Propensity Scores with Continuous Exposures |

CausalImpact | Inferring Causal Effects using Bayesian Structural Time-Series Models |

CausalKinetiX | Learning Stable Structures in Kinetic Systems |

CausalMBSTS | MBSTS Models for Causal Inference and Forecasting |

CausalModels | Causal Inference Modeling for Estimation of Causal Effects |

CausalQueries | Make, Update, and Query Binary Causal Models |

CautiousLearning | Control Charts with Guaranteed In-Control Performance and Cautious Parameters Learning |

CePa | Centrality-Based Pathway Enrichment |

CeRNASeek | Identification and Analysis of ceRNA Regulation |

CenBAR | Broken Adaptive Ridge AFT Model with Censored Data |

CensSpatial | Censored Spatial Models |

Census2016 | Data from the Australian Census 2016 |

CerioliOutlierDetection | Outlier Detection Using the Iterated RMCD Method of Cerioli (2010) |

Certara.R | Easily Install Pharmacometric Packages and Shiny Applications Developed by Certara |

ChIPtest | Nonparametric Methods for Identifying Differential Enrichment Regions with ChIP-Seq Data |

ChainLadder | Statistical Methods and Models for Claims Reserving in General Insurance |

ChangePointTaylor | Identify Changes in Mean |

ChangepointTesting | Change Point Estimation for Clustered Signals |

ChannelAttribution | Markov Model for Online Multi-Channel Attribution |

ChannelAttributionApp | Shiny Web Application for the Multichannel Attribution Problem |

Chaos01 | 0-1 Test for Chaos |

ChaosGame | Chaos Game |

CheckDigit | Calculate and Verify Check Digits |

ChemoSpec | Exploratory Chemometrics for Spectroscopy |

ChemoSpec2D | Exploratory Chemometrics for 2D Spectroscopy |

ChemoSpecUtils | Functions Supporting Packages ChemoSpec and ChemoSpec2D |

ChillModels | Processing Chill and Heat Models for Temperate Fruit Trees |

ChineseNames | Chinese Name Database 1930-2008 |

ChoR | Chordalysis R Package |

ChoiceModelR | Choice Modeling in R |

CholWishart | Cholesky Decomposition of the Wishart Distribution |

CircMLE | Maximum Likelihood Analysis of Circular Data |

CircNNTSR | Statistical Analysis of Circular Data using Nonnegative Trigonometric Sums (NNTS) Models |

CircOutlier | Detection of Outliers in Circular-Circular Regression |

CircSpaceTime | Spatial and Spatio-Temporal Bayesian Model for Circular Data |

CircStats | Circular Statistics, from "Topics in Circular Statistics" (2001) |

CirclesIntersections | Algorithm for Computation of the Intersection Areas of N Circles |

CircularDDM | Circular Drift-Diffusion Model |

CircularSilhouette | Fast Silhouette on Circular or Linear Data Clusters |

Ckmeans.1d.dp | Optimal, Fast, and Reproducible Univariate Clustering |

Claddis | Measuring Morphological Diversity and Evolutionary Tempo |

ClaimsProblems | Analysis of Conflicting Claims |

ClamR | Time Series Modeling for Climate Change Proxies |

ClassComparison | Classes and Methods for "Class Comparison" Problems on Microarrays |

ClassDiscovery | Classes and Methods for "Class Discovery" with Microarrays or Proteomics |

CleanBSequences | Curing of Biological Sequences |

ClickClust | Model-Based Clustering of Categorical Sequences |

ClickClustCont | Mixtures of Continuous Time Markov Models |

ClickHouseHTTP | A Simple HTTP Database Interface to 'ClickHouse' |

CliftLRD | Complex-Valued Wavelet Lifting Estimators of the Hurst Exponent for Irregularly Sampled Time Series |

ClimClass | Climate Classification According to Several Indices |

ClimInd | Climate Indices |

ClimMobTools | API Client for the 'ClimMob' Platform |

ClimProjDiags | Set of Tools to Compute Various Climate Indices |

ClinSigMeasures | Clinical Significance Measures |

ClinicalTrialSummary | Summary Measures for Clinical Trials with Survival Outcomes |

ClinicalUtilityRecal | Recalibration Methods for Improved Clinical Utility of Risk Scores |

CliquePercolation | Clique Percolation for Networks |

CloneSeeker | Seeking and Finding Clones in Copy Number and Sequencing Data |

CluMP | Clustering of Micro Panel Data |

ClueR | Cluster Evaluation |

ClusBoot | Bootstrap Clustering |

ClusPred | Simultaneous Semi-Parametric Estimation of Clustering and Regression |

ClusROC | ROC Analysis in Three-Class Classification Problems for Clustered Data |

ClusTorus | Prediction and Clustering on the Torus by Conformal Prediction |

ClusVis | Gaussian-Based Visualization of Gaussian and Non-Gaussian Model-Based Clustering |

ClussCluster | Simultaneous Detection of Clusters and Cluster-Specific Genes in High-Throughput Transcriptome Data |

ClustAssess | Tools for Assessing Clustering |

ClustBlock | Clustering of Datasets |

ClustGeo | Hierarchical Clustering with Spatial Constraints |

ClustImpute | K-Means Clustering with Build-in Missing Data Imputation |

ClustMMDD | Variable Selection in Clustering by Mixture Models for Discrete Data |

ClustOfVar | Clustering of Variables |

ClustVarLV | Clustering of Variables Around Latent Variables |

Cluster.OBeu | Cluster Analysis 'OpenBudgets.eu' |

ClusterBootstrap | Analyze Clustered Data with Generalized Linear Models using the Cluster Bootstrap |

ClusterR | Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans, K-Medoids and Affinity Propagation Clustering |

ClusterRankTest | Rank Tests for Clustered Data |

ClusterStability | Assessment of Stability of Individual Objects or Clusters in Partitioning Solutions |

ClusteredMutations | Location and Visualization of Clustered Somatic Mutations |

Clustering | Techniques for Evaluating Clustering |

CoClust | Copula Based Cluster Analysis |

CoDiNA | Co-Expression Differential Network Analysis |

CoFRA | Complete Functional Regulation Analysis |

CoImp | Copula Based Imputation Method |

CoNI | Correlation Guided Network Integration (CoNI) |

CoOL | Causes of Outcome Learning |

CoRpower | Power Calculations for Assessing Correlates of Risk in Clinical Efficacy Trials |

CoSMoS | Complete Stochastic Modelling Solution |

CoTiMA | Continuous Time Meta-Analysis ('CoTiMA') |

CodataGS | Genomic Prediction Using SNP Codata |

CodeDepends | Analysis of R Code for Reproducible Research and Code Comprehension |

CohensdpLibrary | Cohen's D_p Computation with Confidence Intervals |

CohortPlat | Simulation of Cohort Platform Trials for Combination Treatments |

Coinprofile | Coincident Profile |

CollapseLevels | Collapses Levels, Computes Information Value and WoE |

CollocInfer | Collocation Inference for Dynamic Systems |

ColorNameR | Give Colors a Name |

ComICS | Computational Methods for Immune Cell-Type Subsets |

CombinS | Construction Methods of some Series of PBIB Designs |

CombinePortfolio | Estimation of Optimal Portfolio Weights by Combining Simple Portfolio Strategies |

CommEcol | Community Ecology Analyses |

CommKern | Network-Based Communities and Kernel Machine Methods |

CommonJavaJars | Useful Libraries for Building a Java Based GUI under R |

CommonMean.Copula | Common Mean Vector under Copula Models |

Comp2ROC | Compare Two ROC Curves that Intersect |

CompAREdesign | Statistical Functions for the Design of Studies with Composite Endpoints |

CompDist | Multisection Composite Distributions |

CompModels | Pseudo Computer Models for Optimization |

CompQuadForm | Distribution Function of Quadratic Forms in Normal Variables |

CompR | Paired Comparison Data Analysis |

Compack | Regression with Compositional Covariates |

CompareCausalNetworks | Interface to Diverse Estimation Methods of Causal Networks |

CompareTests | Correct for Verification Bias in Diagnostic Accuracy & Agreement |

ComparisonSurv | Comparison of Survival Curves Between Two Groups |

Compind | Composite Indicators Functions |

ComplexUpset | Create Complex UpSet Plots Using 'ggplot2' Components |

Compositional | Compositional Data Analysis |

CompoundEvents | Statistical Modeling of Compound Events |

ConConPiWiFun | Optimisation with Continuous Convex Piecewise (Linear and Quadratic) Functions |

ConNEcT | Contingency Measure-Based Networks for Binary Time Series |

ConR | Computation of Parameters Used in Preliminary Assessment of Conservation Status |

ConSpline | Partial Linear Least-Squares Regression using Constrained Splines |

Conake | Continuous Associated Kernel Estimation |

ConcordanceTest | An Alternative to the Kruskal-Wallis Based on the Kendall Tau Distance |

CondCopulas | Estimation and Inference for Conditional Copula Models |

CondIndTests | Nonlinear Conditional Independence Tests |

CondMVT | Conditional Multivariate t Distribution, Expectation Maximization Algorithm, and Its Stochastic Variants |

CondiS | Censored Data Imputation for Direct Modeling |

ConfIntVariance | Confidence Interval for the Univariate Population Variance without Normality Assumption |

ConfigParser | Package to Parse an INI File, Including Variable Interpolation |

ConformalSmallest | Efficient Tuning-Free Conformal Prediction |

ConfusionTableR | Confusion Matrix Toolset |

CongreveLamsdell2016 | Distance Metrics for Trees Generated by Congreve and Lamsdell |

Conigrave | Flexible Tools for Multiple Imputation |

ConnMatTools | Tools for Working with Connectivity Data |

ConnectednessApproach | Connectedness Approach |

ConsRank | Compute the Median Ranking(s) According to the Kemeny's Axiomatic Approach |

ConsRankClass | Classification and Clustering of Preference Rankings |

ConsReg | Fits Regression & ARMA Models Subject to Constraints to the Coefficient |

ContRespPP | Predictive Probability for a Continuous Response with an ANOVA Structure |

ContaminatedMixt | Clustering and Classification with the Contaminated Normal |

ContourFunctions | Create Contour Plots from Data or a Function |

ConvergenceClubs | Finding Convergence Clubs |

ConvergenceConcepts | Seeing Convergence Concepts in Action |

ConvertPar | Estimating IRT Parameters via Machine Learning Algorithms |

Convolutioner | Convolution of Data |

CoopGame | Important Concepts of Cooperative Game Theory |

CoordinateCleaner | Automated Cleaning of Occurrence Records from Biological Collections |

CopCTS | Copula-Based Semiparametric Analysis for Time Series Data with Detection Limits |

CopSens | Copula-Based Sensitivity Analysis for Observational Causal Inference |

CopernicusDEM | Copernicus Digital Elevation Models |

CopernicusMarine | Search Download and Handle Data from Copernicus Marine Service Information |

Copula.Markov | Copula-Based Estimation and Statistical Process Control for Serially Correlated Time Series |

Copula.Markov.survival | Copula Markov Model with Dependent Censoring |

Copula.surv | Analysis of Bivariate Survival Data Based on Copulas |

CopulaCenR | Copula-Based Regression Models for Multivariate Censored Data |

CopulaREMADA | Copula Mixed Models for Multivariate Meta-Analysis of Diagnostic Test Accuracy Studies |

CorBin | Generate High-Dimensional Binary Data with Correlation Structures |

CorMID | Correct Mass Isotopologue Distribution Vectors |

Corbi | Collection of Rudimentary Bioinformatics Tools |

CornerstoneR | Collection of Scripts for Interface Between 'Cornerstone' and 'R' |

CorrBin | Nonparametrics with Clustered Binary and Multinomial Data |

CorrMixed | Estimate Correlations Between Repeatedly Measured Endpoints (E.g., Reliability) Based on Linear Mixed-Effects Models |

CorrToolBox | Modeling Correlational Magnitude Transformations in Discretization Contexts |

CorrectOverloadedPeaks | Correct Overloaded Peaks from GC-APCI-MS Data |

CorrectedFDR | Correcting False Discovery Rates |

Correlplot | A Collection of Functions for Graphing Correlation Matrices |

CosW | The CosW Distribution |

Counterfactual | Estimation and Inference Methods for Counterfactual Analysis |

Counternull | Creating Null and Counternull Distributions to Find Counternull Values |

Countr | Flexible Univariate Count Models Based on Renewal Processes |

CountsEPPM | Mean and Variance Modeling of Count Data |

CovCombR | Combine Partial Covariance / Relationship Matrices |

CovRegRF | Covariance Regression with Random Forests |

CovSel | Model-Free Covariate Selection |

CovTools | Statistical Tools for Covariance Analysis |

CovidMutations | Mutation Analysis Toolkit for COVID-19 (Coronavirus Disease 2019) |

CoxBcv | Bias-Corrected Sandwich Variance Estimators for Marginal Cox Analysis of Cluster Randomized Trials |

CoxICPen | Variable Selection for Cox's Model with Interval-Censored Data |

CoxPlus | Cox Regression (Proportional Hazards Model) with Multiple Causes and Mixed Effects |

CoxR2 | R-Squared Measure Based on Partial LR Statistic, for the Cox PH Regression Model |

CpGFilter | CpG Filtering Method Based on Intra-Class Correlation Coefficients |

CpGassoc | Association Between Methylation and a Phenotype of Interest |

CpmERCCutoff | Calculation of Log2 Counts per Million Cutoff from ERCC Controls |

Cronbach | Cronbach's Alpha |

CropDetectR | Crop Row Detector |

CrossVA | Verbal Autopsy Data Transformation for InSilicoVA and InterVA5 Algorithms |

CrossValidate | Classes and Methods for Cross Validation of "Class Prediction" Algorithms |

Crosstabs.Loglinear | Cross Tabulation and Loglinear Analyses of Categorical Data |

CruzPlot | Plot Shipboard DAS Data |

CryptRndTest | Statistical Tests for Cryptographic Randomness |

CrypticIBDcheck | Identifying Cryptic Relatedness in Genetic Association Studies |

CsChange | Testing for Change in C-Statistic |

Cubist | Rule- And Instance-Based Regression Modeling |

CustomerScoringMetrics | Evaluation Metrics for Customer Scoring Models Depending on Binary Classifiers |

CustosAscensor | Costs Allocation for the Installation of an Elevator |

CutpointsOEHR | Optimal Equal-HR Method to Find Two Cutpoints for U-Shaped Relationships in Cox Model |

Cyclops | Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis |

CytOpT | Optimal Transport for Gating Transfer in Cytometry Data with Domain Adaptation |

CytobankAPI | Cytobank API Wrapper for R |

c060 | Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models |

c212 | Methods for Detecting Safety Signals in Clinical Trials Using Body-Systems (System Organ Classes) |

c2c | Compare Two Classifications or Clustering Solutions of Varying Structure |

c2d4u.tools | 'c2d4u' - CRAN Packages for 'Ubuntu' |

c3 | 'C3.js' Chart Library |

c3net | Inferring Large-Scale Gene Networks with C3NET |

cAIC4 | Conditional Akaike Information Criterion for 'lme4' and 'nlme' |

cIRT | Choice Item Response Theory |

cNORM | Continuous Norming |

cOde | Automated C Code Generation for 'deSolve', 'bvpSolve' |

cPCG | Efficient and Customized Preconditioned Conjugate Gradient Method for Solving System of Linear Equations |

cPseudoMaRg | Constructs a Correlated Pseudo-Marginal Sampler |

cSEM | Composite-Based Structural Equation Modeling |

ca | Simple, Multiple and Joint Correspondence Analysis |

caMST | Mixed Computerized Adaptive Multistage Testing |

caROC | Continuous Biomarker Evaluation with Adjustment of Covariates |

caRamel | Automatic Calibration by Evolutionary Multi Objective Algorithm |

caRecall | Government of Canada Vehicle Recalls Database API Wrapper |

caRpools | CRISPR AnalyzeR for Pooled CRISPR Screens |

caTools | Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etc |

cabinets | Project Specific Workspace Organization Templates |

cabootcrs | Bootstrap Confidence Regions for Simple and Multiple Correspondence Analysis |

cacIRT | Classification Accuracy and Consistency under Item Response Theory |

cacc | Conjunctive Analysis of Case Configurations |

cache | Cache and Retrieve Computation Results |

cachem | Cache R Objects with Automatic Pruning |

caesar | Encrypts and Decrypts Strings |

caffsim | Simulation of Plasma Caffeine Concentrations by Using Population Pharmacokinetic Model |

calACS | Calculations for All Common Subsequences |

calcUnique | Simple Wrapper for Computationally Expensive Functions |

calcWOI | Calculates the Wavelet-Based Organization Index |

calculus | High Dimensional Numerical and Symbolic Calculus |

calendR | Ready to Print Monthly and Yearly Calendars Made with 'ggplot2' |

calendRio | 'calendR' Fork with Additional Features (Backwards Compatible) |

calendar | Create, Read, Write, and Work with 'iCalander' Files, Calendars and Scheduling Data |

calibrar | Automated Parameter Estimation for Complex (Ecological) Models |

calibrate | Calibration of Scatterplot and Biplot Axes |

calibrateBinary | Calibration for Computer Experiments with Binary Responses |

calibrationband | Calibration Bands |

calibrator | Bayesian Calibration of Complex Computer Codes |

calidad | Assesses the Quality of Estimates Made by Complex Sample Designs |

callr | Call R from R |

callsync | Recording Synchronisation, Call Detection and Assignment, Audio Analysis |

calmate | Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation |

calpassapi | R Interface to Access CalPASS API |

camcorder | Record Your Plot History |

camerondata | Datasets from "Microeconometrics: Methods and Applications" by Cameron and Trivedi |

campaignmanageR | Connect to Campaign Manager via the 'Windsor.ai' API |

campfin | Wrangle Campaign Finance Data |

campsis | Generic PK/PD Simulation Platform CAMPSIS |

campsismod | Generic Implementation of a PK/PD Model |

camsRad | Client for CAMS Radiation Service |

camtrapR | Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses |

canadacovid | API Wrapper for the Canadian COVID-19 Tracker |

canadamaps | Maps of the Political and Administrative Divisions of Canada |

canadianmaps | Canadian Mapping Made Easy |

canaper | Categorical Analysis of Neo- And Paleo-Endemism |

cancensus | Access, Retrieve, and Work with Canadian Census Data and Geography |

cancerGI | Analyses of Cancer Gene Interaction |

cancerTiming | Estimation of Temporal Ordering of Cancer Abnormalities |

candisc | Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis |

canprot | Chemical Metrics of Differentially Expressed Proteins |

cansim | Accessing Statistics Canada Data Table and Vectors |

canvasXpress | Visualization Package for CanvasXpress in R |

canvasXpress.data | Datasets for the 'canvasXpress' Package |

cap | Covariate Assisted Principal (CAP) Regression for Covariance Matrix Outcomes |

cape | Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice |

caper | Comparative Analyses of Phylogenetics and Evolution in R |

capitalR | Capital Budgeting Analysis, Annuity Loan Calculations and Amortization Schedules |

capl | Compute and Visualize CAPL-2 Scores and Interpretations |

capm | Companion Animal Population Management |

capn | Capital Asset Pricing for Nature |

captioner | Numbers Figures and Creates Simple Captions |

captr | Client for the Captricity API |

capushe | CAlibrating Penalities Using Slope HEuristics |

car | Companion to Applied Regression |

carData | Companion to Applied Regression Data Sets |

carSurv | Correlation-Adjusted Regression Survival (CARS) Scores |

caracas | Computer Algebra |

carat | Covariate-Adaptive Randomization for Clinical Trials |

carbonate | Interact with 'carbon.js' |

carcass | Estimation of the Number of Fatalities from Carcass Searches |

card | Cardiovascular and Autonomic Research Design |

cardidates | Identification of Cardinal Dates in Ecological Time Series |

care | High-Dimensional Regression and CAR Score Variable Selection |

careless | Procedures for Computing Indices of Careless Responding |

caret | Classification and Regression Training |

caretEnsemble | Ensembles of Caret Models |

caretForecast | Conformal Time Series Forecasting Using State of Art Machine Learning Algorithms |

carfima | Continuous-Time Fractionally Integrated ARMA Process for Irregularly Spaced Long-Memory Time Series Data |

cargo | Develop R Packages using Rust |

caribou | Estimation of Caribou Abundance Based on Radio Telemetry Data |

caroline | A Collection of Database, Data Structure, Visualization, and Utility Functions for R |

carpenter | Build Common Tables of Summary Statistics for Reports |

carrier | Isolate Functions for Remote Execution |

cartograflow | Filtering Matrix for Flow Mapping |

cartogram | Create Cartograms with R |

cartogramR | Continuous Cartogram |

cartography | Thematic Cartography |

casabourse | Casablanca Stock Exchange Data |

caschrono | S |

cascsim | Casualty Actuarial Society Individual Claim Simulator |

caseMatch | Identify Similar Cases for Qualitative Case Studies |

casebase | Fitting Flexible Smooth-in-Time Hazards and Risk Functions via Logistic and Multinomial Regression |

casino | Play Casino Games |

cassandRa | Finds Missing Links and Metric Confidence Intervals in Ecological Bipartite Networks |

cassowaryr | Compute Scagnostics on Pairs of Numeric Variables in a Data Set |

castor | Efficient Phylogenetics on Large Trees |

cat | Analysis and Imputation of Categorical-Variable Datasets with Missing Values |

cat2cat | Handling an Inconsistently Coded Categorical Variable in a Panel Dataset |

catIrt | Simulate IRT-Based Computerized Adaptive Tests |

catR | Generation of IRT Response Patterns under Computerized Adaptive Testing |

catSurv | Computerized Adaptive Testing for Survey Research |

cata | Analysis of Check-All-that-Apply (CATA) Data |

catalog | Access the 'Spark Catalog' API via 'sparklyr' |

catch | Covariate-Adjusted Tensor Classification in High-Dimensions |

catcont | Test, Identify, Select and Mutate Categorical or Continuous Values |

catdap | Categorical Data Analysis Program Package |

catdata | Categorical Data |

cate | High Dimensional Factor Analysis and Confounder Adjusted Testing and Estimation |

categoryEncodings | Category Variable Encodings |

catfun | Categorical Data Analysis |

cati | Community Assembly by Traits: Individuals and Beyond |

catlearn | Formal Psychological Models of Categorization and Learning |

catmap | Case-Control and TDT Meta-Analysis Package |

catmaply | Heatmap for Categorical Data using 'plotly' |

cats | Cohort Platform Trial Simulation |

catseyes | Create Catseye Plots Illustrating the Normal Distribution of the Means |

catsim | Binary and Categorical Image Similarity Index |

cauchypca | Robust Principal Component Analysis Using the Cauchy Distribution |

causact | Accelerated Bayesian Analytics with DAGs |

causal.decomp | Causal Decomposition Analysis |

causalDisco | Tools for Causal Discovery on Observational Data |

causalOT | Optimal Transport Weights for Causal Inference |

causalPAF | Causal Effect for Population Attributable Fractions (PAF) |

causaldata | Example Data Sets for Causal Inference Textbooks |

causaldrf | Estimating Causal Dose Response Functions |

causaleffect | Deriving Expressions of Joint Interventional Distributions and Transport Formulas in Causal Models |

causaloptim | An Interface to Specify Causal Graphs and Compute Bounds on Causal Effects |

causalsens | Selection Bias Approach to Sensitivity Analysis for Causal Effects |

causalweight | Estimation Methods for Causal Inference Based on Inverse Probability Weighting |

caviarpd | Cluster Analysis via Random Partition Distributions |

cba | Clustering for Business Analytics |

cbanalysis | Coffee Break Descriptive Analysis |

cbinom | Continuous Analog of a Binomial Distribution |

cbioportalR | Browse and Query Clinical and Genomic Data from cBioPortal |

cbl | Causal Discovery under a Confounder Blanket |

cbq | Conditional Binary Quantile Models |

cbsodataR | Statistics Netherlands (CBS) Open Data API Client |

ccRemover | Removes the Cell-Cycle Effect from Single-Cell RNA-Sequencing Data |

ccTensor | CUR/CX Tensor Decomposition |

ccaPP | (Robust) Canonical Correlation Analysis via Projection Pursuit |

cccd | Class Cover Catch Digraphs |

cccm | Crossed Classification Credibility Model |

cccp | Cone Constrained Convex Problems |

cccrm | Concordance Correlation Coefficient for Repeated (and Non-Repeated) Measures |

ccda | Combined Cluster and Discriminant Analysis |

ccdf | Distribution-Free Single-Cell Differential Expression Analysis |

cchs | Cox Model for Case-Cohort Data with Stratified Subcohort-Selection |

cchsflow | Transforming and Harmonizing CCHS Variables |

ccid | Cross-Covariance Isolate Detect: a New Change-Point Method for Estimating Dynamic Functional Connectivity |

cclust | Convex Clustering Methods and Clustering Indexes |

ccmEstimator | Comparative Causal Mediation Estimation |

ccmReportR | Wraps 'CCM' with Utility Functions |

ccml | Consensus Clustering for Different Sample Coverage Data |

ccmm | Compositional Mediation Model |

ccoptimalmatch | Implementation of Case-Control Optimal Matching |

ccostr | Estimation of Mean Costs in Censored Data |

ccpsyc | Methods for Cross-Cultural Psychology |

ccrs | Correct and Cluster Response Style Biased Data |

ccrtm | Coupled Chain Radiative Transfer Models |

ccss | Cluster Circular Systematic Sampling |

cctools | Tools for the Continuous Convolution Trick in Nonparametric Estimation |

cd | CD Data for Entity Resolution |

cdata | Fluid Data Transformations |

cdcatR | Cognitive Diagnostic Computerized Adaptive Testing |

cdcfluview | Retrieve Flu Season Data from the United States Centers for Disease Control and Prevention ('CDC') 'FluView' Portal |

cdcsis | Conditional Distance Correlation Based Feature Screening and Conditional Independence Inference |

cder | Interface to the California Data Exchange Center |

cdfquantreg | Quantile Regression for Random Variables on the Unit Interval |

cdlTools | Tools to Download and Work with USDA Cropscape Data |

cdlei | Cause-Deleted Life Expectancy Improvement Procedure |

cdmTools | Useful Tools for Cognitive Diagnosis Modeling |

cdom | R Functions to Model CDOM Spectra |

cdparcoord | Top Frequency-Based Parallel Coordinates |

cdrcR | Load 'CDRC' Data |

cds | Constrained Dual Scaling for Detecting Response Styles |

ceRtainty | Certainty Equivalent |

ceg | Chain Event Graph |

celestial | Collection of Common Astronomical Conversion Routines and Functions |

cellOrigins | Finds RNASeq Source Tissues Using In Situ Hybridisation Data |

cellVolumeDist | Functions to Fit Cell Volume Distributions and Thereby Estimate Cell Growth Rates and Division Times |

cellWise | Analyzing Data with Cellwise Outliers |

cellpypes | Cell Type Pipes for Single-Cell RNA Sequencing Data |

cellranger | Translate Spreadsheet Cell Ranges to Rows and Columns |

celltrackR | Motion Trajectory Analysis |

cem | Coarsened Exact Matching |

cenGAM | Censored Regression with Smooth Terms |

cencrne | Consistent Estimation of the Number of Communities via Regularized Network Embedding |

censCov | Linear Regression with a Randomly Censored Covariate |

censReg | Censored Regression (Tobit) Models |

censable | Making Census Data More Usable |

censo2017 | Base de Datos de Facil Acceso del Censo 2017 de Chile (2017 Chilean Census Easy Access Database) |

censorcopula | Estimate Parameter of Bivariate Copula |

censored | 'parsnip' Engines for Survival Models |

censusGeography | Changes United States Census Geographic Code into Name of Location |

censusapi | Retrieve Data from the Census APIs |

censusr | Collect Data from the Census API |

censusxy | Access the U.S. Census Bureau's Geocoding API System |

censys | Tools to Query the 'Censys' API |

centiserve | Find Graph Centrality Indices |

centralplot | Show the Strength of Relationships Between Centre and Peripheral Items |

centrifugeR | Non-Trivial Balance of Centrifuge Rotors |

cepR | Busca CEPs Brasileiros |

cepiigeodist | CEPII's GeoDist Datasets |

cepp | Context Driven Exploratory Projection Pursuit |

cepreader | Read 'CEP' and Legacy 'CANOCO' Files |

ceramic | Download Online Imagery Tiles |

cesR | Access the Canadian Election Study Datasets |

ceser | Cluster Estimated Standard Errors |

cetcolor | CET Perceptually Uniform Colour Maps |

ceterisParibus | Ceteris Paribus Profiles |

cfa | Configural Frequency Analysis (CFA) |

cfbfastR | Access College Football Play by Play Data |

cfda | Categorical Functional Data Analysis |

cfdecomp | Counterfactual Decomposition: MC Integration of the G-Formula |

cffdrs | Canadian Forest Fire Danger Rating System |

cffr | Generate Citation File Format ('cff') Metadata for R Packages |

cfid | Identification of Counterfactual Queries in Causal Models |

cfma | Causal Functional Mediation Analysis |

cfmortality | Cystic Fibrosis Survival Prediction Model Based on Stanojevic Model |

cforward | Forward Selection using Concordance/C-Index |

cft | Climate Futures Toolbox |

cg | Compare Groups, Analytically and Graphically |

cgAUC | Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it. |

cgaim | Constrained Groupwise Additive Index Models |

cgal4h | 'CGAL' Version 4 C++ Header Files |

cgalMeshes | R6 Based Utilities for 3D Meshes using 'CGAL' |

cgam | Constrained Generalized Additive Model |

cglasso | Conditional Graphical LASSO for Gaussian Graphical Models with Censored and Missing Values |

cglm | Fits Conditional Generalized Linear Models |

cgmanalysis | Clean and Analyze Continuous Glucose Monitor Data |

cgmquantify | Analyzing Glucose and Glucose Variability |

cgrcusum | Continuous Time Generalized Rapid Response CUSUM |

cgwtools | Miscellaneous Tools |

ch | About some Small Functions |

chameleon | Automatic Colors for Multi-Dimensional Data |

chandwich | Chandler-Bate Sandwich Loglikelihood Adjustment |

changeRangeR | Change Metrics for Species Geographic Ranges |

changepoint | Methods for Changepoint Detection |

changepoint.geo | Geometrically Inspired Multivariate Changepoint Detection |

changepoint.influence | Package to Calculate the Influence of the Data on a Changepoint Segmentation |

changepoint.np | Methods for Nonparametric Changepoint Detection |

changepointTests | Change Point Tests for Joint Distributions and Copulas |

changepoints | A Collection of Change-Point Detection Methods |

changepointsHD | Change-Point Estimation for Expensive and High-Dimensional Models |

changepointsVar | Change-Points Detections for Changes in Variance |

changer | Change R Package Name |

chantrics | Loglikelihood Adjustments for Econometric Models |

charlatan | Make Fake Data |

chartql | Simplified Language for Plots and Charts |

chatgpt | Interface to 'ChatGPT' from R |

cheatsheet | Download R Cheat Sheets Locally |

checkLuhn | Checks if a Number is Valid Using the Luhn Algorithm |

checkarg | Check the Basic Validity of a (Function) Argument |

checkdown | Check-Fields and Check-Boxes for 'rmarkdown' |

checkmate | Fast and Versatile Argument Checks |

checkpoint | Install Packages from Snapshots on the Checkpoint Server for Reproducibility |

checkr | Check the Properties of Common R Objects |

cheddar | Analysis and Visualisation of Ecological Communities |

cheese | Tools for Working with Data During Statistical Analysis |

chemCal | Calibration Functions for Analytical Chemistry |

chemmodlab | A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models |

chemodiv | Analysing Chemodiversity of Phytochemical Data |

chemometrics | Multivariate Statistical Analysis in Chemometrics |

cherry | Multiple Testing Methods for Exploratory Research |

cherryblossom | Cherry Blossom Run Race Results |

chess | Read, Write, Create and Explore Chess Games |

chest | Change-in-Estimate Approach to Assess Confounding Effects |

chi | The Chi Distribution |

chicane | Capture Hi-C Analysis Engine |

childdevdata | Child Development Data |

childesr | Accessing the 'CHILDES' Database |

childsds | Data and Methods Around Reference Values in Pediatrics |

chilemapas | Mapas de las Divisiones Politicas y Administrativas de Chile (Maps of the Political and Administrative Divisions of Chile) |

chillR | Statistical Methods for Phenology Analysis in Temperate Fruit Trees |

chinese.misc | Miscellaneous Tools for Chinese Text Mining and More |

chipPCR | Toolkit of Helper Functions to Pre-Process Amplification Data |

chirps | API Client for CHIRPS and CHIRTS |

chisq.posthoc.test | A Post Hoc Analysis for Pearson's Chi-Squared Test for Count Data |

chisquare | Chi-Square and G-Square Test of Independence, Residual Analysis, and Measures of Categorical Association |

chk | Check User-Supplied Function Arguments |

chkptstanr | Checkpoint MCMC Sampling with 'Stan' |

chlorpromazineR | Convert Antipsychotic Doses to Chlorpromazine Equivalents |

chngpt | Estimation and Hypothesis Testing for Threshold Regression |

choiceDes | Design Functions for Choice Studies |

cholera | Amend, Augment and Aid Analysis of John Snow's Cholera Map |

choplump | Permutation Test for Some Positive and Many Zero Responses |

chopthin | The Chopthin Resampler |

chords | Estimation in Respondent Driven Samples |

choroplethr | Simplify the Creation of Choropleth Maps in R |

choroplethrAdmin1 | Contains an Administrative-Level-1 Map of the World |

choroplethrMaps | Contains Maps Used by the 'choroplethr' Package |

christmas | Generation of Different Animated Christmas Cards |

chromConverter | Chromatographic File Converter |

chromer | Interface to Chromosome Counts Database API |

chromoMap | Interactive Genomic Visualization of Biological Data |

chromote | Headless Chrome Web Browser Interface |

chromseq | Split Chromosome 'Fasta' File |

chron | Chronological Objects which can Handle Dates and Times |

chronicle | Grammar for Creating R Markdown Reports |

chronicler | Add Logging to Functions |

chronochrt | Creating Chronological Charts |

chronosphere | Earth System History Variables |

chunkR | Read Tables in Chunks |

chunked | Chunkwise Text-File Processing for 'dplyr' |

chunkhooks | Chunk Hooks for 'R Markdown' |

chyper | Functions for Conditional Hypergeometric Distributions |

ciTools | Confidence or Prediction Intervals, Quantiles, and Probabilities for Statistical Models |

ciccr | Causal Inference in Case-Control Studies |

cicerone | Provide Tours of 'Shiny' Applications |

cif | Cointegrated ICU Forecasting |

cifti | Toolbox for Connectivity Informatics Technology Initiative ('CIFTI') Files |

ciftiTools | Tools for Reading, Writing, Viewing and Manipulating CIFTI Files |

cimir | Interface to the CIMIS Web API |

cinaR | A Computational Pipeline for Bulk 'ATAC-Seq' Profiles |

cinaRgenesets | Ready-to-Use Curated Gene Sets for 'cinaR' |

cinterpolate | Interpolation From C |

cipheR | Encryption and Decryption with Text Ciphers |

cir | Centered Isotonic Regression and Dose-Response Utilities |

circacompare | Analyses of Circadian Data |

circle | R Client Package for Circle CI |

circletyper | Curve Text Elements in 'Shiny' Using 'CircleType.js' |

circlize | Circular Visualization |

circular | Circular Statistics |

circularEV | Extreme Value Analysis for Circular Data |

circumplex | Analysis and Visualization of Circular Data |

cit | Causal Inference Test |

citation | Software Citation Tools |

citationchaser | Perform Forward and Backwards Chasing in Evidence Syntheses |

citecorp | Client for the Open Citations Corpus |

cities | Clinical Trials with Intercurrent Events Simulator |

cito | Building and Training Neural Networks |

citrus | Customer Intelligence Tool for Rapid Understandable Segmentation |

ciu | Contextual Importance and Utility |

ciuupi2 | Kabaila and Giri (2009) Confidence Interval |

civis | R Client for the 'Civis Platform API' |

cjar | R Client for 'Customer Journey Analytics' ('CJA') API |

cjbart | Heterogeneous Effects Analysis of Conjoint Experiments |

cjoint | AMCE Estimator for Conjoint Experiments |

ckanr | Client for the Comprehensive Knowledge Archive Network ('CKAN') API |

clValid | Validation of Clustering Results |

cladoRcpp | C++ Implementations of Phylogenetic Cladogenesis Calculations |

clam | Classical Age-Depth Modelling of Cores from Deposits |

clampSeg | Idealisation of Patch Clamp Recordings |

clarifai | Access to Clarifai API |

clarkeTest | Distribution-Free Tests of Non-Nested Models |

class | Functions for Classification |

classGraph | Construct Graphs of S4 Class Hierarchies |

classInt | Choose Univariate Class Intervals |

classifierplots | Generates a Visualization of Classifier Performance as a Grid of Diagnostic Plots |

classifly | Explore Classification Models in High Dimensions |

classmap | Visualizing Classification Results |

cld2 | Google's Compact Language Detector 2 |

cld3 | Google's Compact Language Detector 3 |

clda | Convolution-Based Linear Discriminant Analysis |

cleaR | Clean the R Console and Environment |

clean | Fast and Easy Data Cleaning |

cleanNLP | A Tidy Data Model for Natural Language Processing |

cleanTS | Testbench for Univariate Time Series Cleaning |

cleancall | C Resource Cleanup via Exit Handlers |

cleandata | To Inspect and Manipulate Data; and to Keep Track of This Process |

cleaner | Fast and Easy Data Cleaning |

cleangeo | Cleaning Geometries from Spatial Objects |

cleanrmd | Clean Class-Less 'R Markdown' HTML Documents |

clespr | Composite Likelihood Estimation for Spatial Data |

clevr | Clustering and Link Prediction Evaluation in R |

clhs | Conditioned Latin Hypercube Sampling |

cli | Helpers for Developing Command Line Interfaces |

cliapp | Create Rich Command Line Applications |

clickR | Semi-Automatic Preprocessing of Messy Data with Change Tracking for Dataset Cleaning |

clickstream | Analyzes Clickstreams Based on Markov Chains |

clidatajp | Data from Japan Meteorological Agency |

cliff | Execute Command Line Programs Interactively |

clifford | Arbitrary Dimensional Clifford Algebras |

clifro | Easily Download and Visualise Climate Data from CliFlo |

clikcorr | Censoring Data and Likelihood-Based Correlation Estimation |

climaemet | Climate AEMET Tools |

climateStability | Estimating Climate Stability from Climate Model Data |

climatol | Climate Tools (Series Homogenization and Derived Products) |

climatrends | Climate Variability Indices for Ecological Modelling |

climdex.pcic | PCIC Implementation of Climdex Routines |

clime | Constrained L1-Minimization for Inverse (Covariance) Matrix Estimation |

climextRemes | Tools for Analyzing Climate Extremes |

climwin | Climate Window Analysis |

clinDR | Simulation and Analysis Tools for Clinical Dose Response Modeling |

clinDataReview | Clinical Data Review Tool |

clinPK | Clinical Pharmacokinetics Toolkit |

clinUtils | General Utility Functions for Analysis of Clinical Data |

clinfun | Clinical Trial Design and Data Analysis Functions |

clinicalsignificance | Determine the Clinical Significance in Clinical Trials |

clinmon | Hemodynamic Calculations from Clinical Monitoring |

clinsig | Clinical Significance Functions |

clinspacy | Clinical Natural Language Processing using 'spaCy', 'scispaCy', and 'medspaCy' |

clintools | Tools for Clinical Research |

clipp | Calculating Likelihoods by Pedigree Paring |

clipr | Read and Write from the System Clipboard |

clisymbols | Unicode Symbols at the R Prompt |

clmplus | Tool-Box of Chain Ladder Plus Models |

clock | Date-Time Types and Tools |

clockify | A Wrapper for the 'Clockify' API |

clogitL1 | Fitting Exact Conditional Logistic Regression with Lasso and Elastic Net Penalties |

clogitLasso | Sparse Conditional Logistic Regression for Matched Studies |

clogitboost | Boosting Conditional Logit Model |

clordr | Composite Likelihood Inference and Diagnostics for Replicated Spatial Ordinal Data |

cloudUtil | Cloud Utilization Plots |

cloudml | Interface to the Google Cloud Machine Learning Platform |

cloudos | R Client Library for CloudOS |

cloudstoR | Simplifies Access to Cloudstor API |

clr | Curve Linear Regression via Dimension Reduction |

clttools | Central Limit Theorem Experiments (Theoretical and Simulation) |

clubSandwich | Cluster-Robust (Sandwich) Variance Estimators with Small-Sample Corrections |

clue | Cluster Ensembles |

clusTransition | Monitor Changes in Cluster Solutions of Dynamic Datasets |

cluscov | Clustered Covariate Regression |

clusrank | Wilcoxon Rank Tests for Clustered Data |

clust.bin.pair | Statistical Methods for Analyzing Clustered Matched Pair Data |

clustAnalytics | Cluster Evaluation on Graphs |

clustDRM | Clustering Dose-Response Curves and Fitting Appropriate Models to Them |

clustEff | Clusters of Effects Curves in Quantile Regression Models |

clustMD | Model Based Clustering for Mixed Data |

clustMixType | k-Prototypes Clustering for Mixed Variable-Type Data |

cluster | "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al. |

cluster.datasets | Cluster Analysis Data Sets |

clusterCons | Consensus Clustering using Multiple Algorithms and Parameters |

clusterCrit | Clustering Indices |

clusterGeneration | Random Cluster Generation (with Specified Degree of Separation) |

clusterHD | Tools for Clustering High-Dimensional Data |

clusterPower | Power Calculations for Cluster-Randomized and Cluster-Randomized Crossover Trials |

clusterRepro | Reproducibility of Gene Expression Clusters |

clusterSEs | Calculate Cluster-Robust p-Values and Confidence Intervals |

clusterSim | Searching for Optimal Clustering Procedure for a Data Set |

clusterability | Performs Tests for Cluster Tendency of a Data Set |

clusteredinterference | Causal Effects from Observational Studies with Clustered Interference |

clusterhap | Clustering Genotypes in Haplotypes |

clustering.sc.dp | Optimal Distance-Based Clustering for Multidimensional Data with Sequential Constraint |

clustermole | Unbiased Single-Cell Transcriptomic Data Cell Type Identification |

clustermq | Evaluate Function Calls on HPC Schedulers (LSF, SGE, SLURM, PBS/Torque) |

clusternomics | Integrative Clustering for Heterogeneous Biomedical Datasets |

clustertend | Check the Clustering Tendency |

clustra | Clustering Longitudinal Trajectories |

clustrd | Methods for Joint Dimension Reduction and Clustering |

clustree | Visualise Clusterings at Different Resolutions |

clustringr | Cluster Strings by Edit-Distance |

clustvarsel | Variable Selection for Gaussian Model-Based Clustering |

clv | Cluster Validation Techniques |

cmR | Analysis of Cardiac Magnetic Resonance Images |

cmaRs | Implementation of the Conic Multivariate Adaptive Regression Splines in R |

cmaes | Covariance Matrix Adapting Evolutionary Strategy |

cmaesr | Covariance Matrix Adaptation Evolution Strategy |

cmbClust | Conditional Mixture Modeling and Model-Based Clustering |

cmcR | An Implementation of the 'Congruent Matching Cells' Method |

cmce | Computer Model Calibration for Deterministic and Stochastic Simulators |

cmdfun | Framework for Building Interfaces to Shell Commands |

cmenet | Bi-Level Selection of Conditional Main Effects |

cmfrec | Collective Matrix Factorization for Recommender Systems |

cmhc | Access, Retrieve, and Work with CMHC Data |

cml | Conditional Manifold Learning |

cmm | Categorical Marginal Models |

cmmr | CEU Mass Mediator RESTful API |

cmna | Computational Methods for Numerical Analysis |

cmocean | Beautiful Colour Maps for Oceanography |

cmprsk | Subdistribution Analysis of Competing Risks |

cmprskQR | Analysis of Competing Risks Using Quantile Regressions |

cmprskcoxmsm | Use IPW to Estimate Treatment Effect under Competing Risks |

cmpsR | R Implementation of Congruent Matching Profile Segments Method |

cmrutils | Misc Functions of the Center for Mathematical Research |

cms | Calculate Medicare Reimbursement |

cmsaf | A Toolbox for CM SAF NetCDF Data |

cmsafops | Tools for CM SAF NetCDF Data |

cmsafvis | Tools to Visualize CM SAF NetCDF Data |

cmstatr | Statistical Methods for Composite Material Data |

cmtest | Conditional Moments Test |

cmvnorm | The Complex Multivariate Gaussian Distribution |

cna | Causal Modeling with Coincidence Analysis |

cnaOpt | Optimizing Consistency and Coverage in Configurational Causal Modeling |

cnbdistr | Conditional Negative Binomial Distribution |

cncaGUI | Canonical Non-Symmetrical Correspondence Analysis in R |

cns | Color Naming System |

cnum | Chinese Numerals Processing |

coRanking | Co-Ranking Matrix |

coala | A Framework for Coalescent Simulation |

coalescentMCMC | MCMC Algorithms for the Coalescent |

coalitions | Bayesian "Now-Cast" Estimation of Event Probabilities in Multi-Party Democracies |

coarseDataTools | Analysis of Coarsely Observed Data |

cobalt | Covariate Balance Tables and Plots |

cobiclust | Biclustering via Latent Block Model Adapted to Overdispersed Count Data |

cobs | Constrained B-Splines (Sparse Matrix Based) |

coca | Cluster-of-Clusters Analysis |

cocktailApp | 'shiny' App to Discover Cocktails |

cocor | Comparing Correlations |

cocorresp | Co-Correspondence Analysis Methods |

cocron | Statistical Comparisons of Two or more Alpha Coefficients |

coda | Output Analysis and Diagnostics for MCMC |

coda.base | A Basic Set of Functions for Compositional Data Analysis |

coda4microbiome | Compositional Data Analysis for Microbiome Studies |

codacore | Learning Sparse Log-Ratios for Compositional Data |

codalm | Transformation-Free Linear Regression for Compositional Outcomes and Predictors |

codaredistlm | Compositional Data Linear Models with Composition Redistribution |

codeCollection | Collection of Codes with Labels |

codebook | Automatic Codebooks from Metadata Encoded in Dataset Attributes |

codebookr | Create Codebooks from Data Frames |

codebreaker | Retro Logic Game |

codemeta | A Smaller 'codemetar' Package |

codemetar | Generate 'CodeMeta' Metadata for R Packages |

codename | Generation of Code Names for Organizations, People, Projects, and Whatever Else |

codep | Multiscale Codependence Analysis |

coder | Deterministic Categorization of Items Based on External Code Data |

codetools | Code Analysis Tools for R |

codexcopd | The CODEX (Comorbidity, Obstruction, Dyspnea, and Previous Severe Exacerbations) Index: Short and Medium-Term Prognosis in Patients Hospitalized for Chronic Obstructive Pulmonary Disease (COPD) Exacerbations |

codez | Seq2Seq Encoder-Decoder Model for Time-Feature Analysis Based on Tensorflow |

codified | Produce Standard/Formalized Demographics Tables |

codingMatrices | Alternative Factor Coding Matrices for Linear Model Formulae |

codyn | Community Dynamics Metrics |

coefa | Meta Analysis of Factor Analysis Based on CO-Occurrence Matrices |

coefficientalpha | Robust Coefficient Alpha and Omega with Missing and Non-Normal Data |

coefplot | Plots Coefficients from Fitted Models |

coenocliner | Coenocline Simulation |

coenoflex | Gradient-Based Coenospace Vegetation Simulator |

cofad | Contrast Analyses for Factorial Designs |

cofeatureR | Generate Cofeature Matrices |

coffee | Chronological Ordering for Fossils and Environmental Events |

coga | Convolution of Gamma Distributions |

cogmapr | Cognitive Mapping Tools Based on Coding of Textual Sources |

cognitoR | Authentication for 'Shiny' Apps with 'Amazon Cognito' |

cohortBuilder | Data Source Agnostic Filtering Tools |

cohorts | Cohort Analysis Made Easy |

cohorttools | Cohort Data Analyses |

coil | Contextualization and Evaluation of COI-5P Barcode Data |

coin | Conditional Inference Procedures in a Permutation Test Framework |

coinmarketcapr | Get 'Cryptocurrencies' Market Cap Prices from Coin Market Cap |

cointReg | Parameter Estimation and Inference in a Cointegrating Regression |

cointmonitoR | Consistent Monitoring of Stationarity and Cointegrating Relationships |

cold | Count Longitudinal Data |

colf | Constrained Optimization on Linear Function |

collUtils | Auxiliary Package for Package 'CollapsABEL' |

collapse | Advanced and Fast Data Transformation |

collapsibleTree | Interactive Collapsible Tree Diagrams using 'D3.js' |

collateral | Quickly Evaluate Captured Side Effects |

collatz | Functions Related to the Collatz/Syracuse/3n+1 Problem |

collections | High Performance Container Data Types |

collidr | Check for Namespace Collisions Across Packages and Functions on CRAN |

collin | Visualization the Effects of Collinearity in Distributed Lag Models and Other Linear Models |

collpcm | Collapsed Latent Position Cluster Model for Social Networks |

colmozzie | Dengue Cases and Climate Variables in Colombo Sri Lanka |

coloc | Colocalisation Tests of Two Genetic Traits |

colocalization | Normalized Spatial Intensity Correlation |

colocalized | Clusters of Colocalized Sequences |

colocr | Conduct Co-Localization Analysis of Fluorescence Microscopy Images |

colorBlindness | Safe Color Set for Color Blindness |

colorDF | Colorful Data Frames in R Terminal |

colorRamp2 | Generate Color Mapping Functions |

colorRamps | Builds Color Tables |

colorSpec | Color Calculations with Emphasis on Spectral Data |

colorblindcheck | Check Color Palettes for Problems with Color Vision Deficiency |

colordistance | Distance Metrics for Image Color Similarity |

colorednoise | Simulate Temporally Autocorrelated Populations |

colorfindr | Extract Colors from Windows BMP, JPEG, PNG, TIFF, and SVG Format Images |

colorhcplot | Colorful Hierarchical Clustering Dendrograms |

colorhex | Colors and Palettes from Color-Hex |

colorist | Coloring Wildlife Distributions in Space-Time |

colorizer | Colorize Old Images Using the 'DeOldify' Image Colorization API |

colormap | Color Palettes using Colormaps Node Module |

colorpatch | Optimized Rendering of Fold Changes and Confidence Values |

colorr | Color Palettes for EPL, MLB, NBA, NHL, and NFL Teams |

colorscience | Color Science Methods and Data |

colorspace | A Toolbox for Manipulating and Assessing Colors and Palettes |

colourlovers | R Client for the COLOURlovers API |

colourpicker | A Colour Picker Tool for Shiny and for Selecting Colours in Plots |

colourvalues | Assigns Colours to Values |

colourvision | Colour Vision Models |

colt | Command-Line Color Themes |

comFuncs | Commonly Used Functions for R Shiny Applications |

comat | Creates Co-Occurrence Matrices of Spatial Data |

comato | Analysis of Concept Maps and Concept Landscapes |

combinIT | A Combined Interaction Test for Unreplicated Two-Way Tables |

combinat | combinatorics utilities |

combinationpvalues | Combination of Independent P-Values |

combinatorics | Introduction to Some Combinatorial Relations |

combinedevents | Calculate Scores and Marks for Track and Field Combined Events |

combiroc | Selection and Ranking of Omics Biomarkers Combinations Made Easy |

combiter | Combinatorics Iterators |

comclim | Community Climate Statistics |

cometExactTest | Exact Test from the Combinations of Mutually Exclusive Alterations (CoMEt) Algorithm |

cometr | 'Comet' API for R |

comf | Models and Equations for Human Comfort Research |

commafree | Call Functions Without Commas Between Arguments |

commentr | Print Nicely Formatted Comments for Use in Script Files |

common | Solutions for Common Problems in Base R |

commonmark | High Performance CommonMark and Github Markdown Rendering in R |

commonsMath | JAR Files of the Apache Commons Mathematics Library |

communication | Feature Extraction and Model Estimation for Audio of Human Speech |

comorbidity | Computing Comorbidity Scores |

comorosmaps | Comoro Islands Maps |

compHclust | Complementary Hierarchical Clustering |

comparator | Comparison Functions for Clustering and Record Linkage |

compare | Comparing Objects for Differences |

compareC | Compare Two Correlated C Indices with Right-Censored Survival Outcome |

compareDF | Do a Git Style Diff of the Rows Between Two Dataframes with Similar Structure |

compareGroups | Descriptive Analysis by Groups |

compareMCMCs | Compare MCMC Efficiency from 'nimble' and/or Other MCMC Engines |

comparison | Multivariate Likelihood Ratio Calculation and Evaluation |

compas | Conformational Manipulations of Protein Atomic Structures |

comperank | Ranking Methods for Competition Results |

comperes | Manage Competition Results |

competitiontoolbox | A Graphical User Interface for Antitrust and Trade Practitioners |

compicc | Calculate the Confidence Interval for the Difference of ICCs |

completejourney | Retail Shopping Data |

complexNet | Complex Network Generation |

complexity | Calculate the Proportion of Permutations in Line with an Informative Hypothesis |

complexplus | Functions of Complex or Real Variable |

complmrob | Robust Linear Regression with Compositional Data as Covariates |

compositions | Compositional Data Analysis |

composits | Compositional, Multivariate and Univariate Time Series Outlier Ensemble |

compound.Cox | Univariate Feature Selection and Compound Covariate for Predicting Survival |

comprehenr | List Comprehensions |

compute.es | Compute Effect Sizes |

comsimitv | Flexible Framework for Simulating Community Assembly |

comtradr | Interface with the United Nations Comtrade API |

con2aqi | Calculate the AQI from Pollutant Concentration |

con2lki | Calculate the Dutch Air Quality Index (LKI) |

conStruct | Models Spatially Continuous and Discrete Population Genetic Structure |

conText | 'a la Carte' on Text (ConText) Embedding Regression |

concatenate | Human-Friendly Text from Unknown Strings |

concatipede | Easy Concatenation of Fasta Sequences |

concaveman | A Very Fast 2D Concave Hull Algorithm |

conclust | Pairwise Constraints Clustering |

concom | Connected Components of an Undirected Graph |

concorR | CONCOR and Supplemental Functions |

concordance | Product Concordance |

concreg | Concordance Regression |

concstats | Market Structure, Concentration and Inequality Measures |

cond | Approximate Conditional Inference for Logistic and Loglinear Models |

condGEE | Parameter Estimation in Conditional GEE for Recurrent Event Gap Times |

condMVNorm | Conditional Multivariate Normal Distribution |

condTruncMVN | Conditional Truncated Multivariate Normal Distribution |

condformat | Conditional Formatting in Data Frames |

condir | Computation of P Values and Bayes Factors for Conditioning Data |

conditionz | Control How Many Times Conditions are Thrown |

condmixt | Conditional Density Estimation with Neural Network Conditional Mixtures |

condorOptions | Trading Condor Options Strategies |

conductor | Create Tours in 'Shiny' Apps Using 'Shepherd.js' |

condusco | Query-Driven Pipeline Execution and Query Templates |

condvis | Conditional Visualization for Statistical Models |

condvis2 | Interactive Conditional Visualization for Supervised and Unsupervised Models in Shiny |

coneproj | Primal or Dual Cone Projections with Routines for Constrained Regression |

conf | Visualization and Analysis of Statistical Measures of Confidence |

conf.design | Construction of factorial designs |

confSAM | Estimates and Bounds for the False Discovery Proportion, by Permutation |

confidence | Confidence Estimation of Environmental State Classifications |

config | Manage Environment Specific Configuration Values |

configr | An Implementation of Parsing and Writing Configuration File (JSON/INI/YAML/TOML) |

configural | Multivariate Profile Analysis |

confinterpret | Descriptive Interpretations of Confidence Intervals |

confintr | Confidence Intervals |

conflicted | An Alternative Conflict Resolution Strategy |

conflr | Client for 'Confluence' API |

conformalClassification | Transductive and Inductive Conformal Predictions for Classification Problems |

conformalInference.fd | Tools for Conformal Inference for Regression in Multivariate Functional Setting |

conformalInference.multi | Conformal Inference Tools for Regression with Multivariate Response |

conformalbayes | Jackknife(+) Predictive Intervals for Bayesian Models |

confoundr | Diagnostics for Confounding of Time-Varying and Other Joint Exposures |

confreq | Configural Frequencies Analysis Using Log-Linear Modeling |

congress | Access the Congress.gov API |

conicfit | Algorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov |

conjoint | An Implementation of Conjoint Analysis Method |

conjurer | A Parametric Method for Generating Synthetic Data |

conleyreg | Estimations using Conley Standard Errors |

conmet | Construct Measurement Evaluation Tool |

connectwidgets | Organize and Curate Your Content Within 'Posit Connect' |

conogive | Congeneric Normal-Ogive Model |

conos | Clustering on Network of Samples |

conover.test | Conover-Iman Test of Multiple Comparisons Using Rank Sums |

conquer | Convolution-Type Smoothed Quantile Regression |

conquestr | An R Package to Extend 'ACER ConQuest' |

conserveR | Identifying Conservation Prioritization Methods Based on Data Availability |

consolechoice | An Easy and Quick Way to Loop a Character Vector as a Menu in the Console |

consort | Create Consort Diagram |

consortr | Interactive Consort Flow Diagrams |

constants | Reference on Constants, Units and Uncertainty |

constellation | Identify Event Sequences Using Time Series Joins |

contFracR | Continued Fraction Generators and Evaluators |

contTimeCausal | Continuous Time Causal Models |

contactdata | Social Contact Matrices for 152 Countries |

container | Extending Base 'R' Lists |

contentid | An Interface for Content-Based Identifiers |

contfrac | Continued Fractions |

contingency | Discrete Multivariate Probability Distributions |

contingencytables | Statistical Analysis of Contingency Tables |

contourPlot | Plots x,y,z Co-Ordinates in a Contour Map |

contoureR | Contouring of Non-Regular Three-Dimensional Data |

contrast | A Collection of Contrast Methods |

contribution | A Tiny Contribution Table Generator Based on 'ggplot2' |

control | A Control Systems Toolbox |

controlTest | Quantile Comparison for Two-Sample Right-Censored Survival Data |

controlfunctionIV | Control Function Methods with Possibly Invalid Instrumental Variables |

contsurvplot | Visualize the Effect of a Continuous Variable on a Time-to-Event Outcome |

convdistr | Convolute Probabilistic Distributions |

convergEU | Monitoring Convergence of EU Countries |

convertGraph | Convert Graphical Files Format |

convertid | Convert Gene IDs Between Each Other and Fetch Annotations from Biomart |

convertr | Convert Between Units |

convevol | Analysis of Convergent Evolution |

convexjlr | Disciplined Convex Programming in R using 'Convex.jl' |

convey | Income Concentration Analysis with Complex Survey Samples |

convoSPAT | Convolution-Based Nonstationary Spatial Modeling |

cooccur | Probabilistic Species Co-Occurrence Analysis in R |

cookies | Use Browser Cookies with 'shiny' |

cooltools | Practical Tools for Scientific Computations and Visualizations |

coop | Co-Operation: Fast Covariance, Correlation, and Cosine Similarity Operations |

coopProductGame | Cooperative Aspects of Linear Production Programming Problems |

copBasic | General Bivariate Copula Theory and Many Utility Functions |

copCAR | Fitting the copCAR Regression Model for Discrete Areal Data |

cope | Coverage Probability Excursion (CoPE) Sets |

copent | Estimating Copula Entropy and Transfer Entropy |

coppeCosenzaR | COPPE-Cosenza Fuzzy Hierarchy Model |

copre | Tools for Nonparametric Martingale Posterior Sampling |

cops | Cluster Optimized Proximity Scaling |

copula | Multivariate Dependence with Copulas |

copulaData | Data Sets for Copula Modeling |

copulaSim | Virtual Patient Simulation by Copula Invariance Property |

copulaboost | Fitting Additive Copula Regression Models for Binary Outcome Regression |

copulaedas | Estimation of Distribution Algorithms Based on Copulas |

copulareg | Copula Regression |

copyseparator | Assembling Long Gene Copies from Short Read Data |

corHMM | Hidden Markov Models of Character Evolution |

corTESTsrd | Significance Testing of Rank Cross-Correlations under SRD |

corTest | Robust Tests for Equal Correlation |

cora | Cora Data for Entity Resolution |

corazon | Apply 'colorffy' Color Gradients Within 'shiny' Elements |

corclass | Correlational Class Analysis |

cord | Community Estimation in G-Models via CORD |

cordillera | Calculation of the OPTICS Cordillera |

coreCT | Programmatic Analysis of Sediment Cores Using Computed Tomography Imaging |

coreCollection | Core Collection |

coreNLP | Wrappers Around Stanford CoreNLP Tools |

coreSim | Core Functionality for Simulating Quantities of Interest from Generalised Linear Models |

corehunter | Multi-Purpose Core Subset Selection |

corels | R Binding for the 'Certifiably Optimal RulE ListS (Corels)' Learner |

corkscrew | Preprocessor for Data Modeling |

corlink | Record Linkage, Incorporating Imputation for Missing Agreement Patterns, and Modeling Correlation Patterns Between Fields |

corncob | Count Regression for Correlated Observations with the Beta-Binomial |

cornet | Elastic Net with Dichotomised Outcomes |

coro | 'Coroutines' for R |

coroICA | Confounding Robust Independent Component Analysis for Noisy and Grouped Data |

corona | Coronavirus ('Rona') Data Exploration |

coronavirus | The 2019 Novel Coronavirus COVID-19 (2019-nCoV) Dataset |

corpcor | Efficient Estimation of Covariance and (Partial) Correlation |

corpora | Statistics and Data Sets for Corpus Frequency Data |

corporaexplorer | A 'Shiny' App for Exploration of Text Collections |

corpus | Text Corpus Analysis |

corpustools | Managing, Querying and Analyzing Tokenized Text |

corr2D | Implementation of 2D Correlation Analysis in R |

corrDNA | Finding Associations in Position-Wise Aligned DNA Sequence Dataset |

corrarray | Correlation Arrays and 2-Sample Correlation Matrices |

corrcoverage | Correcting the Coverage of Credible Sets from Bayesian Genetic Fine Mapping |

correctR | Corrected Test Statistics for Comparing Machine Learning Models on Correlated Samples |

correctedAUC | Correcting AUC for Measurement Error |

corregp | Functions and Methods for Correspondence Regression |

correlation | Methods for Correlation Analysis |

correlationfunnel | Speed Up Exploratory Data Analysis (EDA) with the Correlation Funnel |

correlbinom | Correlated Binomial Probabilities |

correspondenceTables | Creating Correspondence Tables Between Two Statistical Classifications |

corrgram | Plot a Correlogram |

corrgrapher | Explore Correlations Between Variables in a Machine Learning Model |

corrplot | Visualization of a Correlation Matrix |

corrr | Correlations in R |

corrsieve | Software for Summarising and Evaluating STRUCTURE Output |

corrtable | Creates and Saves Out a Correlation Table with Significance Levels Indicated |

corset | Arbitrary Bounding of Series and Time Series Objects |

corto | Inference of Gene Regulatory Networks |

corx | Create and Format Correlation Matrices |

cosa | Bound Constrained Optimal Sample Size Allocation |

cosinor | Tools for Estimating and Predicting the Cosinor Model |

cosinor2 | Extended Tools for Cosinor Analysis of Rhythms |

cosmicsig | Mutational Signatures from COSMIC (Catalogue of Somatic Mutations in Cancer) |

cosmoFns | Functions for Cosmological Distances, Times, Luminosities, Etc |

costat | Time Series Costationarity Determination |

costsensitive | Cost-Sensitive Multi-Class Classification |

cotram | Count Transformation Models |

cotrend | Consistent Co-Trending Rank Selection |

couchDB | Connect to and Work with CouchDB Databases |

countHMM | Penalized Estimation of Flexible Hidden Markov Models for Time Series of Counts |

countToFPKM | Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM) |

countTransformers | Transform Counts in RNA-Seq Data Analysis |

countcolors | Locates and Counts Pixels Within Color Range(s) in Images |

countdata | The Beta-Binomial Test for Count Data |

countdown | A Countdown Timer for HTML Presentations, Documents, and Web Apps |

countfitteR | Comprehensive Automatized Evaluation of Distribution Models for Count Data |

countgmifs | Discrete Response Regression for High-Dimensional Data |

countland | Analysis of Biological Count Data, Especially from Single-Cell RNA-Seq |

countrycode | Convert Country Names and Country Codes |

covBM | Brownian Motion Processes for 'nlme'-Models |

covKCD | Covariance Estimation for Matrix Data with the Kronecker-Core Decomposition |

covRobust | Robust Covariance Estimation via Nearest Neighbor Cleaning |

covTestR | Covariance Matrix Tests |

covafillr | Local Polynomial Regression of State Dependent Covariates in State-Space Models |

covatest | Tests on Properties of Space-Time Covariance Functions |

covdepGE | Covariate Dependent Graph Estimation |

coveffectsplot | Produce Forest Plots to Visualize Covariate Effects |

covequal | Test for Equality of Covariance Matrices |

covfefe | Covfefy Any Word, Sentence or Speech |

covglasso | Sparse Covariance Matrix Estimation |

covid19.analytics | Load and Analyze Live Data from the COVID-19 Pandemic |

covid19br | Brazilian COVID-19 Pandemic Data |

covid19brazil | COVID-19 Dataset for Brazil |

covid19dbcand | Selected 'Drugbank' Drugs for COVID-19 Treatment Related Data in R Format |

covid19france | Cases of COVID-19 in France |

covid19india | Pulling Clean Data from Covid19india.org |

covid19italy | The 2019 Novel Coronavirus COVID-19 (2019-nCoV) Italy Dataset |

covid19sf | The Covid19 San Francisco Dataset |

covid19srilanka | The 2019 Novel Coronavirus COVID-19 (2019-nCoV) Data in Sri Lanka |

covid19swiss | COVID-19 Cases in Switzerland and Principality of Liechtenstein |

covid19us | Cases of COVID-19 in the United States |

covidcast | Client for Delphi's 'COVIDcast Epidata' API |

covidmx | Descarga y analiza datos de COVID-19 en MÃ©xico |

covidprobability | Estimate the Unit-Wide Probability of COVID-19 |

covidsymptom | COVID Symptom Study Sweden Open Dataset |

covr | Test Coverage for Packages |

covsep | Tests for Determining if the Covariance Structure of 2-Dimensional Data is Separable |

covsim | VITA, IG and PLSIM Simulation for Given Covariance and Marginals |

cowbell | Performs Segmented Linear Regression on Two Independent Variables |

cowplot | Streamlined Plot Theme and Plot Annotations for 'ggplot2' |

cowsay | Messages, Warnings, Strings with Ascii Animals |

coxed | Duration-Based Quantities of Interest for the Cox Proportional Hazards Model |

coxme | Mixed Effects Cox Models |

coxmeg | Cox Mixed-Effects Models for Genome-Wide Association Studies |

coxphMIC | Sparse Estimation of Cox Proportional Hazards Models via Approximated Information Criterion |

coxphSGD | Stochastic Gradient Descent log-Likelihood Estimation in Cox Proportional Hazards Model |

coxphf | Cox Regression with Firth's Penalized Likelihood |

coxphw | Weighted Estimation in Cox Regression |

coxrobust | Fit Robustly Proportional Hazards Regression Model |

coxrt | Cox Proportional Hazards Regression for Right-Truncated Data |

coxsei | Fitting a CoxSEI Model |

cp4p | Calibration Plot for Proteomics |

cpa | Confirmatory Path Analysis Through 'd-sep' Tests |

cpca | Methods to perform Common Principal Component Analysis (CPCA) |

cpd | Complex Pearson Distributions |

cpfa | Classification with Parallel Factor Analysis |

cpi | Conditional Predictive Impact |

cpk | Clinical Pharmacokinetics |

cplm | Compound Poisson Linear Models |

cplots | Plots for Circular Data |

cpm | Sequential and Batch Change Detection Using Parametric and Nonparametric Methods |

cpop | Detection of Multiple Changes in Slope in Univariate Time-Series |

cpp11 | A C++11 Interface for R's C Interface |

cppRouting | Algorithms for Routing and Solving the Traffic Assignment Problem |

cppcheckR | Check 'C' and 'C++' Files using 'Cppcheck' |

cpr | Control Polygon Reduction |

cprobit | Conditional Probit Model for Analysing Continuous Outcomes |

cprr | Functions for Working with Danish CPR Numbers |

cpsR | Load CPS Microdata into R Using the 'Census Bureau Data' API |

cpss | Change-Point Detection by Sample-Splitting Methods |

cpsurvsim | Simulating Survival Data from Change-Point Hazard Distributions |

cpsvote | A Toolbox for Using the CPSâ€™s Voting and Registration Supplement |

cpt | Classification Permutation Test |

cptcity | 'cpt-city' Colour Gradients |

cqcr | Access 'Care Quality Commission' Data |

cqrReg | Quantile, Composite Quantile Regression and Regularized Versions |

cquad | Conditional Maximum Likelihood for Quadratic Exponential Models for Binary Panel Data |

cragg | Tests for Weak Instruments in R |

cramer | Multivariate Nonparametric Cramer-Test for the Two-Sample-Problem |

crandep | Network Analysis of Dependencies of CRAN Packages |

crank | Completing Ranks |

cranlike | Tools for 'CRAN'-Like Repositories |

cranlogs | Download Logs from the 'RStudio' 'CRAN' Mirror |

cranly | Package Directives and Collaboration Networks in CRAN |

crassmat | Conditional Random Sampling Sparse Matrices |

crawl | Fit Continuous-Time Correlated Random Walk Models to Animal Movement Data |

crayon | Colored Terminal Output |

crch | Censored Regression with Conditional Heteroscedasticity |

crctStepdown | Univariate Analysis of Cluster Trials with Multiple Outcomes |

createLogicalPCM | Create Logical Pairwise Comparison Matrix for the Analytic Hierarchy Process |

credentials | Tools for Managing SSH and Git Credentials |

creditmodel | Toolkit for Credit Modeling, Analysis and Visualization |

credsubs | Credible Subsets |

credule | Credit Default Swap Functions |

cregg | Simple Conjoint Tidying, Analysis, and Visualization |

crfsuite | Conditional Random Fields for Labelling Sequential Data in Natural Language Processing |

cricketdata | International Cricket Data |

cricketr | Analyze Cricketers and Cricket Teams Based on ESPN Cricinfo Statsguru |

crimCV | Group-Based Modelling of Longitudinal Data |

crimedata | Access Crime Data from the Open Crime Database |

crimeutils | A Comprehensive Set of Functions to Clean, Analyze, and Present Crime Data |

crisp | Fits a Model that Partitions the Covariate Space into Blocks in a Data- Adaptive Way |

criticality | Modeling Fissile Material Operations in Nuclear Facilities |

criticalpath | An Implementation of the Critical Path Method |

critpath | Setting the Critical Path |

crmPack | Object-Oriented Implementation of CRM Designs |

crmReg | Cellwise Robust M-Regression and SPADIMO |

crmn | CCMN and Other Normalization Methods for Metabolomics Data |

crochet | Implementation Helper for '[' and '[<-' of Custom Matrix-Like Types |

cromwellDashboard | A Dashboard to Visualize Scientific Workflows in 'Cromwell' |

cronR | Schedule R Scripts and Processes with the 'cron' Job Scheduler |

crone | Structural Crystallography in 1d |

cronologia | Create an HTML Vertical Timeline from a Data Frame in 'rmarkdown' and 'shiny' |

crop | Graphics Cropping Tool |

cropDemand | Spatial Crop Water Demand for Brazil |

cropZoning | Climate Crop Zoning Based in Air Temperature for Brazil |

cropcircles | Crops an Image to a Circle |

cropdatape | Open Data of Agricultural Production of Crops of Peru |

cropgrowdays | Crop Growing Degree Days and Agrometeorological Calculations |

crops | Changepoints for a Range of Penalties (CROPS) |

crossdes | Construction of Crossover Designs |

crossmap | Apply Functions to All Combinations of List Elements |

crossnma | Cross-Design & Cross-Format Network Meta-Analysis and Regression |

crossrun | Joint Distribution of Number of Crossings and Longest Run |

crosstable | Crosstables for Descriptive Analyses |

crosstalk | Inter-Widget Interactivity for HTML Widgets |

crosstalkr | Analysis of Graph-Structured Data with a Focus on Protein-Protein Interaction Networks |

crossurr | Cross-Fitting for Doubly Robust Evaluation of High-Dimensional Surrogate Markers |

crossval | Generic Functions for Cross Validation |

crossvalidationCP | Cross-Validation for Change-Point Regression |

crosswalkr | Rename and Encode Data Frames Using External Crosswalk Files |

crossword.r | Generating Crosswords from Word Lists |

crov | Constrained Regression Model for an Ordinal Response and Ordinal Predictors |

crplyr | A 'dplyr' Interface for Crunch |

crqa | Recurrence Quantification Analysis for Categorical and Continuous Time-Series |

crrSC | Competing Risks Regression for Stratified and Clustered Data |

crrcbcv | Bias-Corrected Variance for Competing Risks Regression with Clustered Data |

crs | Categorical Regression Splines |

crseEventStudy | A Robust and Powerful Test of Abnormal Stock Returns in Long-Horizon Event Studies |

crsmeta | Extract Coordinate System Metadata |

crsnls | Nonlinear Regression Parameters Estimation by 'CRS4HC' and 'CRS4HCe' |

crso | Cancer Rule Set Optimization ('crso') |

crsra | Tidying and Analyzing 'Coursera' Research Export Data |

crsuggest | Obtain Suggested Coordinate Reference System Information for Spatial Data |

crtests | Classification and Regression Tests |

crul | HTTP Client |

crunch | Crunch.io Data Tools |

crunchy | Shiny Apps on Crunch |

cruts | Interface to Climatic Research Unit Time-Series Version 3.21 Data |

cry | Statistics for Structural Crystallography |

crypto2 | Download Crypto Currency Data from 'CoinMarketCap' without 'API' |

cryptoverse | Visualization and Analytics for the Cryptoverse |

cryptowatchR | An API Wrapper for 'Cryptowatch' |

cryst | Calculate the Relative Crystallinity of Starch by XRD and FTIR |

csa | A Cross-Scale Analysis Tool for Model-Observation Visualization and Integration |

csampling | Functions for Conditional Simulation in Regression-Scale Models |

csci | Current Status Confidence Intervals |

csdata | Structural Data for Norway |

cshapes | The CShapes 2.0 Dataset and Utilities |

csmaps | Preformatted Maps of Norway that Don't Need Geolibraries |

csn | Closed Skew-Normal Distribution |

csodata | Download Data from the CSO 'PxStat' API |

cspec | Complete Discrete Fourier Transform (DFT) and Periodogram |

cspp | A Tool for the Correlates of State Policy Project Data |

csppData | Data Only: The Correlates of State Policy Project Dataset |

cssTools | Cognitive Social Structure Tools |

cstab | Selection of Number of Clusters via Normalized Clustering Instability |

cstime | Date and Time Functions for Public Health Purposes |

csurvey | Constrained Regression for Survey Data |

csutil | Common Base-R Problems Relating to Lists |

csv | Read and Write CSV Files with Selected Conventions |

csvread | Fast Specialized CSV File Loader |

csvwr | Read and Write CSV on the Web (CSVW) Tables and Metadata |

csvy | Import and Export CSV Data with a YAML Metadata Header |

cta | Contingency Table Analysis Based on ML Fitting of MPH Models |

ctbi | A Procedure to Clean, Decompose and Aggregate Timeseries |

ctf | Read and Write Column Text Format (CTF) |

ctgdist | Likert Category Distance Calculator |

ctgt | Closed Testing with Globaltest for Pathway Analysis |

cthist | Clinical Trial Registry History |

cthreshER | Continuous Threshold Expectile Regression |

ctl | Correlated Trait Locus Mapping |

ctmcd | Estimating the Parameters of a Continuous-Time Markov Chain from Discrete-Time Data |

ctmcmove | Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains |

ctmle | Collaborative Targeted Maximum Likelihood Estimation |

ctmm | Continuous-Time Movement Modeling |

ctmva | Continuous-Time Multivariate Analysis |

ctpm | Continuous-Time Phylogenetic Modeling |

ctqr | Censored and Truncated Quantile Regression |

ctrdata | Retrieve and Analyze Clinical Trials in Public Registers |

ctrialsgov | Query Data from U.S. National Library of Medicine's Clinical Trials Database |

ctrlGene | Assess the Stability of Candidate Housekeeping Genes |

ctsem | Continuous Time Structural Equation Modelling |

ctsemOMX | Continuous Time SEM - 'OpenMx' Based Functions |

ctv | CRAN Task Views |

cuRe | Parametric Cure Model Estimation |

cubature | Adaptive Multivariate Integration over Hypercubes |

cubble | A Vector Spatio-Temporal Data Structure for Data Analysis |

cubelyr | A Data Cube 'dplyr' Backend |

cubeview | View 3D Raster Cubes Interactively |

cubfits | Codon Usage Bias Fits |

cubicBsplines | Computation of a Cubic B-Spline Basis and Its Derivatives |

cubing | Rubik's Cube Solving |

cuda.ml | R Interface for the RAPIDS cuML Suite of Libraries |

cultevo | Tools, Measures and Statistical Tests for Cultural Evolution |

cumSeg | Change Point Detection in Genomic Sequences |

cumprinc | Functions Centered Around Microsoft Excel Cumprinc Function |

cumstats | Cumulative Descriptive Statistics |

cumulocityr | Client for the 'Cumulocity' API |

cuperdec | Cumulative Percent Decay Curve Generator |

curephEM | NPMLE for Logistic-Cox Cure-Rate Model |

curl | A Modern and Flexible Web Client for R |

currentSurvival | Estimation of CCI and CLFS Functions |

curry | Partial Function Application with %<%, %-<%, and %><% |

cursr | Cursor and Terminal Manipulation |

curstatCI | Confidence Intervals for the Current Status Model |

curtailment | Finds Binary Outcome Designs Using Stochastic Curtailment |

curvHDR | Filtering of Flow Cytometry Samples |

curveDepth | Tukey Curve Depth and Distance in the Space of Curves |

curvecomp | Multiple Curve Comparisons Using Parametric Bootstrap |

cusp | Cusp-Catastrophe Model Fitting Using Maximum Likelihood |

custom.gauss.quad | Custom Made Gauss Quadrature Nodes and Weights |

customizedTraining | Customized Training for Lasso and Elastic-Net Regularized Generalized Linear Models |

cusum | Cumulative Sum (CUSUM) Charts for Monitoring of Hospital Performance |

cusumcharter | Easier CUSUM Control Charts |

cutoff | Seek the Significant Cutoff Value |

cutpointr | Determine and Evaluate Optimal Cutpoints in Binary Classification Tasks |

cvAUC | Cross-Validated Area Under the ROC Curve Confidence Intervals |

cvCovEst | Cross-Validated Covariance Matrix Estimation |

cvGEE | Cross-Validated Predictions from GEE |

cvTools | Cross-validation tools for regression models |

cvam | Coarsened Variable Modeling |

cvap | Citizen Voting Age Population |

cvar | Compute Expected Shortfall and Value at Risk for Continuous Distributions |

cvcrand | Efficient Design and Analysis of Cluster Randomized Trials |

cvequality | Tests for the Equality of Coefficients of Variation from Multiple Groups |

cvmdisc | Cramer von Mises Tests for Discrete or Grouped Distributions |

cvmgof | Cramer-von Mises Goodness-of-Fit Tests |

cvms | Cross-Validation for Model Selection |

cvsem | SEM Model Comparison with K-Fold Cross-Validation |

cvwrapr | Tools for Cross Validation |

cwbtools | Tools to Create, Modify and Manage 'CWB' Corpora |

cwot | Cauchy Weighted Joint Test for Pharmacogenetics Analysis |

cxhull | Convex Hull |

cxr | A Toolbox for Modelling Species Coexistence in R |

cxxfunplus | Extend 'cxxfunction' by Saving the Dynamic Shared Objects |

cycleRtools | Tools for Cycling Data Analysis |

cyclestreets | Cycle Routing and Data for Cycling Advocacy |

cyclocomp | Cyclomatic Complexity of R Code |

cycloids | cycloids |

cyclomort | Survival Modeling with a Periodic Hazard Function |

cyjShiny | Cytoscape.js Shiny Widget (cyjShiny) |

cylcop | Circular-Linear Copulas with Angular Symmetry for Movement Data |

cymruservices | Query 'Team Cymru' 'IP' Address, Autonomous System Number ('ASN'), Border Gateway Protocol ('BGP'), Bogon and 'Malware' Hash Data Services |

cyphr | High Level Encryption Wrappers |

cystiSim | Agent-Based Model for Taenia_solium Transmission and Control |

cytofan | Plot Fan Plots for Cytometry Data using 'ggplot2' |

cytometree | Automated Cytometry Gating and Annotation |

cytominer | Methods for Image-Based Cell Profiling |

czechrates | Czech Interest & Foreign Exchange Rates |

czso | Use Open Data from the Czech Statistical Office in R |

D2MCS | Data Driving Multiple Classifier System |

D3partitionR | Interactive Charts of Nested and Hierarchical Data with 'D3.js' |

D4TAlink.light | FAIR Data - Workflow Management |

DA | Discriminant Analysis for Evolutionary Inference |

DAAG | Data Analysis and Graphics Data and Functions |

DAAGbio | Data Sets and Functions, for Demonstrations with Expression Arrays and Gene Sequences |

DACF | Data Analysis with Ceiling and/or Floor Data |

DAIME | Effects of Changing Deposition Rates |

DAISIE | Dynamical Assembly of Islands by Speciation, Immigration and Extinction |

DAKS | Data Analysis and Knowledge Spaces |

DALEX | moDel Agnostic Language for Exploration and eXplanation |

DALEXtra | Extension for 'DALEX' Package |

DALY | The DALY Calculator - Graphical User Interface for Probabilistic DALY Calculation in R |

DAMOCLES | Dynamic Assembly Model of Colonization, Local Extinction and Speciation |

DAMisc | Dave Armstrong's Miscellaneous Functions |

DAP | Discriminant Analysis via Projections |

DATAstudio | The Research Data Warehouse of Miguel de Carvalho |

DArand | Differential Analysis with Random Reference Genes |

DBERlibR | Automated Assessment Data Analysis for Discipline-Based Education Research |

DBEST | Detecting Breakpoints and Estimating Segments in Trend |

DBHC | Sequence Clustering with Discrete-Output HMMs |

DBI | R Database Interface |

DBIsqldf | Manipulate R Data Frames Using SQL |

DBItest | Testing DBI Backends |

DBNMFrank | Rank Selection for Non-Negative Matrix Factorization |

DBfit | A Double Bootstrap Method for Analyzing Linear Models with Autoregressive Errors |

DBpower | Finite Sample Power Calculations for Detection Boundary Tests |

DCA | Dynamic Correlation Analysis for High Dimensional Data |

DCCA | Detrended Fluctuation and Detrended Cross-Correlation Analysis |

DCD | Differential Community Detection in Paired Biological Networks |

DCEM | Clustering Big Data using Expectation Maximization Star (EM*) Algorithm |

DCEmgmt | DCE Data Reshaping and Processing |

DCEtool | Efficient and Accessible Discrete Choice Experiments |

DCG | Data Cloud Geometry (DCG): Using Random Walks to Find Community Structure in Social Network Analysis |

DCL | Claims Reserving under the Double Chain Ladder Model |

DCLEAR | Distance Based Cell Lineage Reconstruction |

DCODE | List Linear n-Peptide Constraints for Overlapping Protein Regions |

DCPO | Dynamic Comparative Public Opinion |

DCSmooth | Nonparametric Regression and Bandwidth Selection for Spatial Models |

DCchoice | Analyzing Dichotomous Choice Contingent Valuation Data |

DChaos | Chaotic Time Series Analysis |

DCluster | Functions for the Detection of Spatial Clusters of Diseases |

DClusterm | Model-Based Detection of Disease Clusters |

DDD | Diversity-Dependent Diversification |

DDHFm | Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays) |

DDIwR | DDI with R |

DDL | Doubly Debiased Lasso (DDL) |

DDM | Death Registration Coverage Estimation |

DDPNA | Disease-Drived Differential Proteins Co-Expression Network Analysis |

DDRTree | Learning Principal Graphs with DDRTree |

DDoutlier | Distance & Density-Based Outlier Detection |

DEBBI | Differential Evolution-Based Bayesian Inference |

DECIDE | DEComposition of Indirect and Direct Effects |

DEET | Differential Expression Enrichment Tool |

DEEVD | Density Estimation by Extreme Value Distributions |

DEGRE | Inferring Differentially Expressed Genes using Generalized Linear Mixed Models |

DELTD | Kernel Density Estimation using Lifetime Distributions |

DEM | The Distributed EM Algorithms in Multivariate Gaussian Mixture Models |

DEMOVA | DEvelopment (of Multi-Linear QSPR/QSAR) MOdels VAlidated using Test Set |

DEPONS2R | Read, Plot and Analyse Output from the DEPONS Model |

DES | Discrete Event Simulation |

DEoptim | Global Optimization by Differential Evolution |

DEoptimR | Differential Evolution Optimization in Pure R |

DFA | Detrended Fluctuation Analysis |

DFA.CANCOR | Linear Discriminant Function and Canonical Correlation Analysis |

DFIT | Differential Functioning of Items and Tests |

DGCA | Differential Gene Correlation Analysis |

DGEobj | Differential Gene Expression (DGE) Analysis Results Data Object |

DGEobj.utils | Differential Gene Expression (DGE) Analysis Utility Toolkit |

DGLMExtPois | Double Generalized Linear Models Extending Poisson Regression |

DGM | Dynamic Graphical Models |

DHARMa | Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models |

DHBins | Hexmaps for NZ District Health Boards |

DHS.rates | Calculates Demographic Indicators |

DICOMread | Reading and Saving DICOM Image Files |

DIDmultiplegt | Estimation in DID with Multiple Groups and Periods |

DIFboost | Detection of Differential Item Functioning (DIF) in Rasch Models by Boosting Techniques |

DIFlasso | A Penalty Approach to Differential Item Functioning in Rasch Models |

DIFplus | Multilevel Mantel-Haenszel Statistics for Differential Item Functioning Detection |

DIFshiny | Differential Item Functioning via Shiny Application |

DIFtree | Item Focussed Trees for the Identification of Items in Differential Item Functioning |

DIGSS | Determination of Intervals Using Georeferenced Survey Simulation |

DIME | Differential Identification using Mixture Ensemble |

DIMORA | Diffusion Models R Analysis |

DIRECT | Bayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior |

DISTRIB | Four Essential Functions for Statistical Distributions Analysis: A New Functional Approach |

DIZtools | Lightweight Utilities for 'DIZ' R Package Development |

DIZutils | Utilities for 'DIZ' R Package Development |

DIconvex | Finding Patterns of Monotonicity and Convexity in Data |

DImodels | Diversity-Interactions (DI) Models |

DIscBIO | A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics |

DJL | Distance Measure Based Judgment and Learning |

DLASSO | Implementation of Adaptive or Non-Adaptive Differentiable Lasso and SCAD Penalties in Linear Models |

DLL | Decorrelated Local Linear Estimator |

DLMtool | Data-Limited Methods Toolkit |

DLPCA | The Distributed Local PCA Algorithm |

DLSSM | Dynamic Logistic State Space Prediction Model |

DMCfun | Diffusion Model of Conflict (DMC) in Reaction Time Tasks |

DMLLZU | Double Machine Learning |

DMMF | Daily Based Morgan-Morgan-Finney (DMMF) Soil Erosion Model |

DMRMark | DMR Detection by Non-Homogeneous Hidden Markov Model from Methylation Array Data |

DMRnet | Delete or Merge Regressors Algorithms for Linear and Logistic Model Selection and High-Dimensional Data |

DMTL | Tools for Applying Distribution Mapping Based Transfer Learning |

DMtest | Differential Methylation Tests (DMtest) |

DMwR2 | Functions and Data for the Second Edition of "Data Mining with R" |

DNAseqtest | Generating and Testing DNA Sequences |

DNAtools | Tools for Analysing Forensic Genetic DNA Data |

DNH4 | Crawling for Daum News Text |

DNLC | Differential Network Local Consistency Analysis |

DNMF | Discriminant Non-Negative Matrix Factorization |

DOBAD | Analysis of Discretely Observed Linear Birth-and-Death(-and-Immigration) Markov Chains |

DOEM | The Distributed Online Expectation Maximization Algorithms to Solve Parameters of Poisson Mixture Models |

DOPE | Drug Ontology Parsing Engine |

DOS | Design of Observational Studies |

DOS2 | Design of Observational Studies, Companion to the Second Edition |

DOSPortfolio | Dynamic Optimal Shrinkage Portfolio |

DOT | Render and Export DOT Graphs in R |

DOVE | Durability of Vaccine Efficacy |

DOvalidation | Kernel Hazard Estimation with Best One-Sided and Double One-Sided Cross-Validation |

DPBBM | Dirichlet Process Beta-Binomial Mixture |

DPP | Inference of Parameters of Normal Distributions from a Mixture of Normals |

DPQ | Density, Probability, Quantile ('DPQ') Computations |

DPQmpfr | DPQ (Density, Probability, Quantile) Distribution Computations using MPFR |

DPpack | Differentially Private Statistical Analysis and Machine Learning |

DPtree | Dirichlet-Based Polya Tree |

DQAgui | Graphical User Interface for Data Quality Assessment |

DQAstats | Core Functions for Data Quality Assessment |

DR.SC | Joint Dimension Reduction and Spatial Clustering |

DRAYL | Computation of Rayleigh Densities of Arbitrary Dimension |

DRDID | Doubly Robust Difference-in-Differences Estimators |

DRDRtest | A Nonparametric Doubly Robust Test for Continuous Treatment Effect |

DREGAR | Regularized Estimation of Dynamic Linear Regression in the Presence of Autocorrelated Residuals (DREGAR) |

DRHotNet | Differential Risk Hotspots in a Linear Network |

DRIP | Discontinuous Regression and Image Processing |

DRR | Dimensionality Reduction via Regression |

DRaWR | Discriminative Random Walk with Restart |

DRomics | Dose Response for Omics |

DRviaSPCN | Drug Repurposing in Cancer via a Subpathway Crosstalk Network |

DSAIDE | Dynamical Systems Approach to Infectious Disease Epidemiology (Ecology/Evolution) |

DSAIRM | Dynamical Systems Approach to Immune Response Modeling |

DSI | 'DataSHIELD' Interface |

DSL | Distributed Storage and List |

DSLite | 'DataSHIELD' Implementation on Local Datasets |

DSMolgenisArmadillo | 'DataSHIELD' Client for 'MOLGENIS Armadillo' |

DSOpal | 'DataSHIELD' Implementation for 'Opal' |

DSSAT | A Comprehensive R Interface for the DSSAT Cropping Systems Model |

DSSP | Implementation of the Direct Sampling Spatial Prior |

DSWE | Data Science for Wind Energy |

DSjobtracker | What Skills and Qualifications are Required for Data Science Related Jobs? |

DSpoty | Get 'Spotify' API Multiple Information |

DT | A Wrapper of the JavaScript Library 'DataTables' |

DTAT | Dose Titration Algorithm Tuning |

DTAXG | Diagnostic Test Assessment in the Absence of Gold Standard |

DTAplots | Creates Plots Accompanying Bayesian Diagnostic Test Accuracy Meta-Analyses |

DTDA | Doubly Truncated Data Analysis |

DTDA.cif | Doubly Truncated Data Analysis, Cumulative Incidence Functions |

DTDA.ni | Doubly Truncated Data Analysis, Non Iterative |

DTMCPack | Suite of Functions Related to Discrete-Time Discrete-State Markov Chains |

DTR | Estimation and Comparison of Dynamic Treatment Regimes |

DTRlearn2 | Statistical Learning Methods for Optimizing Dynamic Treatment Regimes |

DTRreg | DTR Estimation and Inference via G-Estimation, Dynamic WOLS, Q-Learning, and Dynamic Weighted Survival Modeling (DWSurv) |

DTSEA | Drug Target Set Enrichment Analysis |

DTSg | A Class for Working with Time Series Data Based on 'data.table' and 'R6' with Largely Optional Reference Semantics |

DTWBI | Imputation of Time Series Based on Dynamic Time Warping |

DTWUMI | Imputation of Multivariate Time Series Based on Dynamic Time Warping |

DTwrappers | Simplified Data Analysis with Wrapper Functions for the 'Data.Table' Package |

DUBStepR | Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data |

DVHmetrics | Analyze Dose-Volume Histograms and Check Constraints |

DWBmodelUN | Dynamic Water Balance a Hydrological Model |

DWDLargeR | Fast Algorithms for Large Scale Generalized Distance Weighted Discrimination |

DWLS | Gene Expression Deconvolution Using Dampened Weighted Least Squares |

DWLasso | Degree Weighted Lasso |

DWreg | Parametric Regression for Discrete Response |

DYM | Did You Mean? |

DYNATE | Dynamic Aggregation Testing |

DamiaNN | Neural Network Numerai |

DandEFA | Dandelion Plot for R-Mode Exploratory Factor Analysis |

DanielBiostatistics10th | Functions for Wayne W. Daniel's Biostatistics, Tenth Edition |

Dark | The Analysis of Dark Adaptation Data |

DarkDiv | Estimating Dark Diversity and Site-Specific Species Pools |

Dasst | Tools for Reading, Processing and Writing 'DSSAT' Files |

DatAssim | Data Assimilation |

DataClean | Data Cleaning |

DataCombine | Tools for Easily Combining and Cleaning Data Sets |

DataEditR | An Interactive Editor for Viewing, Entering, Filtering & Editing Data |

DataExplorer | Automate Data Exploration and Treatment |

DataLoader | Import Multiple File Types |

DataSpaceR | Interface to 'the CAVD DataSpace' |

DataVisualizations | Visualizations of High-Dimensional Data |

DataViz | Data Visualisation Using an HTML Page and 'D3.js' |

DatabaseConnector | Connecting to Various Database Platforms |

DatabaseConnectorJars | JAR Dependencies for the 'DatabaseConnector' Package |

DatabionicSwarm | Swarm Intelligence for Self-Organized Clustering |

DatastreamDSWS2R | Provides a Link Between the 'Refinitiv Datastream' System and R |

Davies | The Davies Quantile Function |

DeCAFS | Detecting Changes in Autocorrelated and Fluctuating Signals |

DeRezende.Ferreira | Zero Coupon Yield Curve Modelling |

DeclareDesign | Declare and Diagnose Research Designs |

DecomposeR | Empirical Mode Decomposition for Cyclostratigraphy |

DecorateR | Fit and Deploy DECORATE Trees |

Deducer | A Data Analysis GUI for R |

DeductiveR | Deductive Rational Method |

Delaporte | Statistical Functions for the Delaporte Distribution |

DelayedEffect.Design | Sample Size and Power Calculations using the APPLE, SEPPLE, APPLE+ and SEPPLE+ Methods |

Delta | Measure of Agreement Between Two Raters |

DeltaMAN | Delta Measurement of Agreement for Nominal Data |

DemoDecomp | Decompose Demographic Functions |

DemografixeR | Extrapolate Gender, Age and Nationality of a Name |

DemographicTable | Creating Demographic Table |

DendSer | Dendrogram Seriation: Ordering for Visualisation |

DendroSync | A Set of Tools for Calculating Spatial Synchrony Between Tree-Ring Chronologies |

DensParcorr | Dens-Based Method for Partial Correlation Estimation in Large Scale Brain Networks |

DepLogo | Dependency Logo |

DependencyReviewer | Tool Suite to Investigate Other Packages |

DepthProc | Statistical Depth Functions for Multivariate Analysis |

Deriv | Symbolic Differentiation |

DescTools | Tools for Descriptive Statistics |

DescToolsAddIns | Interactive Functions to be Used as Shortcuts in 'RStudio' |

DescrTab2 | Publication Quality Descriptive Statistics Tables |

DescribeDisplay | An Interface to the 'DescribeDisplay' 'GGobi' Plugin |

DescriptiveStats.OBeu | Descriptive Statistics 'OpenBudgets.eu' |

DescriptiveWH | Descriptive Statistics |

Design.parameters | Parameters of the Experimental Designs |

DesignCTPB | Design Clinical Trials with Potential Biomarker Effect |

DesignLibrary | Library of Research Designs |

DetLifeInsurance | Life Insurance Premium and Reserves Valuation |

DetMCD | Implementation of the DetMCD Algorithm (Robust and Deterministic Estimation of Location and Scatter) |

DetR | Suite of Deterministic and Robust Algorithms for Linear Regression |

DevTreatRules | Develop Treatment Rules with Observational Data |

Devore7 | Data sets from Devore's "Prob and Stat for Eng (7th ed)" |

Dforest | Decision Forest |

DiNAMIC.Duo | Finding Recurrent DNA Copy Number Alterations and Differences |

DiPALM | Differential Pattern Analysis via Linear Modeling |

DiPhiSeq | Robust Tests for Differential Dispersion and Differential Expression in RNA-Sequencing Data |

DiPs | Directional Penalties for Optimal Matching in Observational Studies |

DiSSMod | Fitting Sample Selection Models for Discrete Response Variables |

DiagrammeR | Graph/Network Visualization |

DiagrammeRsvg | Export DiagrammeR Graphviz Graphs as SVG |

DiallelAnalysisR | Diallel Analysis with R |

DiceDesign | Designs of Computer Experiments |

DiceEval | Construction and Evaluation of Metamodels |

DiceKriging | Kriging Methods for Computer Experiments |

DiceOptim | Kriging-Based Optimization for Computer Experiments |

DiceView | Methods for Visualization of Computer Experiments Design and Surrogate |

Dict | R6 Based Key-Value Dictionary Implementation |

DidacticBoost | A Simple Implementation and Demonstration of Gradient Boosting |

Diderot | Bibliographic Network Analysis |

DiffCorr | Analyzing and Visualizing Differential Correlation Networks in Biological Data |

DiffXTables | Pattern Analysis Across Contingency Tables |

DirStats | Nonparametric Methods for Directional Data |

Dire | Linear Regressions with a Latent Outcome Variable |

DirectEffects | Estimating Controlled Direct Effects for Explaining Causal Findings |

DirectStandardisation | Adjusted Means and Proportions by Direct Standardisation |

DirectedClustering | Directed Weighted Clustering Coefficient |

Directional | A Collection of Functions for Directional Data Analysis |

DirichletReg | Dirichlet Regression |

DisHet | Estimate the Gene Expression Levels and Component Proportions of the Normal, Stroma (Immune) and Tumor Components of Bulk Tumor Samples |

DisImpact | Calculates Disproportionate Impact When Binary Success Data are Disaggregated by Subgroups |

DisaggregateTS | High-Dimensional Temporal Disaggregation |

DiscreteFDR | Multiple Testing Procedures with Adaptation for Discrete Tests |

DiscreteInverseWeibull | Discrete Inverse Weibull Distribution |

DiscreteLaplace | Discrete Laplace Distributions |

DiscreteQvalue | Improved q-Values for Discrete Uniform and Homogeneous Tests |

DiscreteWeibull | Discrete Weibull Distributions (Type 1 and 3) |

Disequilibrium | Disequilibrium Models |

DisimForMixed | Calculate Dissimilarity Matrix for Dataset with Mixed Attributes |

DistPlotter | A Graphical User Interface for Plotting Common Univariate Distributions |

Distance | Distance Sampling Detection Function and Abundance Estimation |

DistatisR | DiSTATIS Three Way Metric Multidimensional Scaling |

DistributionFitR | Fitting Multiple Parametric Distributions |

DistributionOptimization | Distribution Optimization |

DistributionTest | Powerful Goodness-of-Fit Tests Based on the Likelihood Ratio |

DistributionUtils | Distribution Utilities |

DivE | Diversity Estimator |

DiversificationR | Econometric Tools to Measure Portfolio Diversification |

DiversityOccupancy | Building Diversity Models from Multiple Species Occupancy Models |

DoE.MIParray | Creation of Arrays by Mixed Integer Programming |

DoE.base | Full Factorials, Orthogonal Arrays and Base Utilities for DoE Packages |

DoE.wrapper | Wrapper Package for Design of Experiments Functionality |

DoEstRare | Rare Variant Association Test Based on Position Density Estimation |

DoTC | Distribution of Typicality Coefficients |

DockerParallel | Using the Docker Container to Create R Workers on Local or Cloud Platform |

Dodge | Acceptance Sampling Ideas Originated by H.F. Dodge |

DominoDataCapture | Domino Data Capture |

DoseFinding | Planning and Analyzing Dose Finding Experiments |

DoubleCone | Test Against Parametric Regression Function |

DoubleExpSeq | Differential Exon Usage Test for RNA-Seq Data via Empirical Bayes Shrinkage of the Dispersion Parameter |

DoubleML | Double Machine Learning in R |

Dowd | Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's Book Measuring Market Risk |

Dpit | Distribution Pitting |

DrBats | Data Representation: Bayesian Approach That's Sparse |

DrDimont | Drug Response Prediction from Differential Multi-Omics Networks |

DrImpute | Imputing Dropout Events in Single-Cell RNA-Sequencing Data |

DramaAnalysis | Analysis of Dramatic Texts |

DriftBurstHypothesis | Calculates the Test-Statistic for the Drift Burst Hypothesis |

DrillR | R Driver for Apache Drill |

DriveML | Self-Drive Machine Learning Projects |

DrugClust | Implementation of a Machine Learning Framework for Predicting Drugs Side Effects |

DrugSim2DR | Predict Drug Functional Similarity to Drug Repurposing |

DstarM | Analyze Two Choice Reaction Time Data with the D*M Method |

DtD | Distance to Default |

DySS | Dynamic Screening Systems |

Dykstra | Quadratic Programming using Cyclic Projections |

DynClust | Denoising and Clustering for Dynamical Image Sequence (2D or 3D)+t |

DynForest | Random Forest with Multivariate Longitudinal Predictors |

DynNom | Visualising Statistical Models using Dynamic Nomograms |

DynTxRegime | Methods for Estimating Optimal Dynamic Treatment Regimes |

DynaRankR | Inferring Longitudinal Dominance Hierarchies |

DynamicGP | Modelling and Analysis of Dynamic Computer Experiments |

DynareR | A Seamless Integration of 'R' and 'Dynare' |

DysPIA | Dysregulated Pathway Identification Analysis |

DysPIAData | Background and Pathway Data Used in 'DysPIA' |

d3Network | Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R |

d3Tree | Create Interactive Collapsible Trees with the JavaScript 'D3' Library |

d3plus | Seamless 'D3Plus' Integration |

d3po | Fast and Beautiful Interactive Visualization for 'Markdown' and 'Shiny' |

d3r | 'd3.js' Utilities for R |

d4storagehub4R | Interface to 'D4Science' 'StorageHub' API |

dBlockmodeling | Deterministic Blockmodeling of Signed, One-Mode and Two-Mode Networks |

dCUR | Dimension Reduction with Dynamic CUR |

dChipIO | Methods for Reading dChip Files |

dCovTS | Distance Covariance and Correlation for Time Series Analysis |

dGAselID | Genetic Algorithm with Incomplete Dominance for Feature Selection |

dHSIC | Independence Testing via Hilbert Schmidt Independence Criterion |

dLagM | Time Series Regression Models with Distributed Lag Models |

dMod | Dynamic Modeling and Parameter Estimation in ODE Models |

dPCP | Automated Analysis of Multiplex Digital PCR Data |

dQTG.seq | A BSA Software for Detecting All Types of QTLs in BC, DH, RIL and F2 |

dSVA | Direct Surrogate Variable Analysis |

dTBM | Multi-Way Spherical Clustering via Degree-Corrected Tensor Block Models |

daarem | Damped Anderson Acceleration with Epsilon Monotonicity for Accelerating EM-Like Monotone Algorithms |

dabestr | Data Analysis using Bootstrap-Coupled Estimation |

dabr | Database Management with R |

dad | Three-Way / Multigroup Data Analysis Through Densities |

dadjoke | Displays a Dad Joke |

dadjokeapi | Return a Random Dad Joke |

dados | Translate Datasets to Portuguese |

dae | Functions Useful in the Design and ANOVA of Experiments |

daewr | Design and Analysis of Experiments with R |

dafishr | Download, Wrangle, and Analyse Vessel Monitoring System Data |

dafs | Data Analysis for Forensic Scientists |

dagHMM | Directed Acyclic Graph HMM with TAN Structured Emissions |

dagR | Directed Acyclic Graphs: Analysis and Data Simulation |

dagirlite | Spatial Vector Data for Danmarks Administrative Geografiske Inddeling DAGI |

dagitty | Graphical Analysis of Structural Causal Models |

dagwood | DAGs with Omitted Objects Displayed (DAGWOOD) |

daiR | Interface with Google Cloud Document AI API |

dail | Data from Access to Information Law |

daiquiri | Data Quality Reporting for Temporal Datasets |

dalmatian | Automating the Fitting of Double Linear Mixed Models in 'JAGS' and 'nimble' |

dam | Data Analysis Metabolomics |

dampack | Decision-Analytic Modeling Package |

damr | Interface to Drosophila Activity Monitor System Result Files |

dams | Dams in the United States from the National Inventory of Dams (NID) |

dang | 'Dang' Associated New Goodies |

dani | Design and Analysis of Non-Inferiority Trials |

dann | Discriminant Adaptive Nearest Neighbor Classification |

danstat | R Client for the Statistics Denmark Databank API |

dapr | 'purrr'-Like Apply Functions Over Input Elements |

daqapo | Data Quality Assessment for Process-Oriented Data |

darksky | Tools to Work with the 'Dark Sky' 'API' |

dartR | Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis |

dartR.data | Auxiliary Data Package for Our Main Package 'dartR' |

dashCoreComponents | Core Interactive UI Components for 'Dash' |

dashHtmlComponents | Vanilla HTML Components for 'Dash' |

dashPivottable | Interactive React-Based Pivot Tables for Dash |

dashTable | Core Interactive Table Component for 'dash' |

dashboardthemes | Customise the Appearance of 'shinydashboard' Applications using Themes |

dat | Tools for Data Manipulation |

data.table | Extension of `data.frame` |

data.tree | General Purpose Hierarchical Data Structure |

data.validator | Automatic Data Validation and Reporting |

data360r | Wrapper for 'TCdata360' and 'Govdata360' API |

dataCompareR | Compare Two Data Frames and Summarise the Difference |

dataMaid | A Suite of Checks for Identification of Potential Errors in a Data Frame as Part of the Data Screening Process |

dataMeta | Create and Append a Data Dictionary for an R Dataset |

dataPreparation | Automated Data Preparation |

dataReporter | Reproducible Data Screening Checks and Report of Possible Errors |

dataRetrieval | Retrieval Functions for USGS and EPA Hydrology and Water Quality Data |

datacleanr | Interactive and Reproducible Data Cleaning |

datadictionary | Create a Data Dictionary |

datadogr | R Client for 'Datadog' API |

dataframeexplorer | Familiarity with Dataframes Before Data Manipulation |

dataframes2xls | Write Data Frames to Xls Files |

datafsm | Estimating Finite State Machine Models from Data |

datagovsgR | Call Real Time APIs from Data Gov Singapore |

datamods | Modules to Import and Manipulate Data in 'Shiny' |

datana | Data and Functions to Accompany Analisis De Datos Con R |

datanugget | Create, Refine, and Cluster Data Nuggets |

dataonderivatives | Easily Source Publicly Available Data on Derivatives |

dataone | R Interface to the DataONE REST API |

datapack | A Flexible Container to Transport and Manipulate Data and Associated Resources |

datapasta | R Tools for Data Copy-Pasta |

dataprep | Efficient and Flexible Data Preprocessing Tools |

dataquieR | Data Quality in Epidemiological Research |

datardis | Data from the Doctor Who Series |

dataresqc | C3S Quality Control Tools for Historical Climate Data |

datarium | Data Bank for Statistical Analysis and Visualization |

datarobot | 'DataRobot' Predictive Modeling API |

datasailr | Row by Row Data Processing Tool, Using 'DataSailr' Script |

datasauRus | Datasets from the Datasaurus Dozen |

dataseries | Switzerland's Data Series in One Place |

dataset | Create Data Frames that are Easier to Exchange and Reuse |

datasets.load | Graphical Interface for Loading Datasets |

datasetsICR | Datasets from the Book "An Introduction to Clustering with R" |

dataspice | Create Lightweight Schema.org Descriptions of Data |

datastepr | An Implementation of a SAS-Style Data Step |

datastructures | Implementation of Core Data Structures |

dataverse | Client for Dataverse 4+ Repositories |

dataversionr | Time Versioned Storage of Data Frames |

datawizard | Easy Data Wrangling and Statistical Transformations |

datazoom.amazonia | Simplify Access to Data from the Amazon Region |

date | Functions for Handling Dates |

datefixR | Standardize Dates in Different Formats or with Missing Data |

datelife | Scientific Data on Time of Lineage Divergence for Your Taxa |

daterangepicker | Create a Shiny Date-Range Input |

datetime | Nominal Dates, Times, and Durations |

datetimeoffset | Datetimes with Optional UTC Offsets and/or Heterogeneous Time Zones |

datetimeutils | Utilities for Dates and Times |

dateutils | Date Utils |

datoramar | Interface to the 'Datorama' API |

datos | Traduce al EspaÃ±ol Varios Conjuntos de Datos de PrÃ¡ctica |

datplot | Preparation of Object Dating Ranges for Density Plots (Aoristic Analysis) |

datr | 'Dat' Protocol Interface |

datrProfile | Column Profile for Tables and Datasets |

dauphin | Compact Standard for Australian Phone Numbers |

dave | Functions for "Data Analysis in Vegetation Ecology" |

dawai | Discriminant Analysis with Additional Information |

daySupply | Calculating Days' Supply and Daily Dose of Prescriptions |

daymetr | Interface to the 'Daymet' Web Services |

dbGaPCheckup | dbGaP Checkup |

dbMC | Confidence Interval for Matrix Completion via De-Biased Estimator |

dbWebForms | Produce R Functions to Create HTML Forms Based on SQL Meta Data |

dbarts | Discrete Bayesian Additive Regression Trees Sampler |

dbcsp | Distance-Based Common Spatial Patterns |

dbd | Discretised Beta Distribution |

dbflobr | Read and Write Files to SQLite Databases |

dbglm | Generalised Linear Models by Subsampling and One-Step Polishing |

dbhydroR | 'DBHYDRO' Hydrologic and Water Quality Data |

dblcens | Compute the NPMLE of Distribution Function from Doubly Censored Data, Plus the Empirical Likelihood Ratio for F(T) |

dblr | Discrete Boosting Logistic Regression |

dbmss | Distance-Based Measures of Spatial Structures |

dbnR | Dynamic Bayesian Network Learning and Inference |

dbnlearn | Dynamic Bayesian Network Structure Learning, Parameter Learning and Forecasting |

dbparser | 'DrugBank' Database XML Parser |

dbplot | Simplifies Plotting Data Inside Databases |

dbplyr | A 'dplyr' Back End for Databases |

dbscan | Density-Based Spatial Clustering of Applications with Noise (DBSCAN) and Related Algorithms |

dbstats | Distance-Based Statistics |

dbx | A Fast, Easy-to-Use Database Interface |

dc3net | Inferring Condition-Specific Networks via Differential Network Inference |

dcGOR | Analysis of Ontologies and Protein Domain Annotations |

dccmidas | DCC Models with GARCH-MIDAS Specifications in the Univariate Step |

dccpp | Fast Computation of Distance Correlations |

dcifer | Genetic Relatedness Between Polyclonal Infections |

dclone | Data Cloning and MCMC Tools for Maximum Likelihood Methods |

dclust | Divisive Hierarchical Clustering |

dcmle | Hierarchical Models Made Easy with Data Cloning |

dcmodify | Modify Data Using Externally Defined Modification Rules |

dcmodifydb | Modifying Rules on a DataBase |

dcortools | Providing Fast and Flexible Functions for Distance Correlation Analysis |

dcov | A Fast Implementation of Distance Covariance |

dcurver | Utility Functions for Davidian Curves |

dcurves | Decision Curve Analysis for Model Evaluation |

ddalpha | Depth-Based Classification and Calculation of Data Depth |

ddc | Distance Density Clustering Algorithm |

dde | Solve Delay Differential Equations |

ddi | The Data Defect Index for Samples that May not be IID |

ddiv | Data Driven I-v Feature Extraction |

ddp | Desirable Dietary Pattern |

ddpca | Diagonally Dominant Principal Component Analysis |

ddpcr | Analysis and Visualization of Droplet Digital PCR in R and on the Web |

ddplot | Create D3 Based SVG Graphics |

ddst | Data Driven Smooth Tests |

deBInfer | Bayesian Inference for Differential Equations |

deBif | Bifurcation Analysis of Ordinary Differential Equation Systems |

deSolve | Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE') |

deTS | Tissue-Specific Enrichment Analysis |

deTestSet | Test Set for Differential Equations |

deaR | Conventional and Fuzzy Data Envelopment Analysis |

deadband | Statistical Deadband Algorithms Comparison |

deal | Learning Bayesian Networks with Mixed Variables |

debar | A Post-Clustering Denoiser for COI-5P Barcode Data |

debugme | Debug R Packages |

debugr | Debug Tool to Watch Objects/Expressions While Running an R Script |

decido | Bindings for 'Mapbox' Ear Cutting Triangulation Library |

decision | Statistical Decision Analysis |

decisionSupport | Quantitative Support of Decision Making under Uncertainty |

deckgl | An R Interface to 'deck.gl' |

declared | Functions for Declared Missing Values |

decode | Differential Co-Expression and Differential Expression Analysis |

decoder | Decode Coded Variables to Plain Text and the Other Way Around |

decomposedPSF | Time Series Prediction with PSF and Decomposition Methods (EMD and EEMD) |

decompr | Global Value Chain Decomposition |

decon | Deconvolution Estimation in Measurement Error Models |

deconstructSigs | Identifies Signatures Present in a Tumor Sample |

deconvolveR | Empirical Bayes Estimation Strategies |

decor | Retrieve Code Decorations |

decorators | Extend the Behaviour of a Function without Explicitly Modifying it |

deducorrect | Deductive Correction, Deductive Imputation, and Deterministic Correction |

deductive | Data Correction and Imputation Using Deductive Methods |

dedupewider | Deduplication Across Multiple Columns |

deep | A Neural Networks Framework |

deepMOU | Clustering of Short Texts by Mixture of Unigrams and Its Deep Extensions |

deepNN | Deep Learning |

deepboost | -- Title is missing -- |

deepdep | Visualise and Explore the Deep Dependencies of R Packages |

deepdive | Deep Learning for General Purpose |

deepgmm | Deep Gaussian Mixture Models |

deepgp | Deep Gaussian Processes using MCMC |

deeplr | Interface to the 'DeepL' Translation API |

deepnet | Deep Learning Toolkit in R |

deepredeff | Deep Learning Prediction of Effectors |

deepregression | Fitting Deep Distributional Regression |

deeptime | Plotting Tools for Anyone Working in Deep Time |

deeptrafo | Fitting Deep Conditional Transformation Models |

default | Change the Default Arguments in R Functions |

defineR | Creates Define XML Documents |

deflateBR | Deflate Nominal Brazilian Reais |

deforestable | Classify RGB Images into Forest or Non-Forest |

deformula | Integration of One-Dimensional Functions with Double Exponential Formulas |

degday | Compute Degree Days |

degreenet | Models for Skewed Count Distributions Relevant to Networks |

degross | Density Estimation from GROuped Summary Statistics |

dejaVu | Multiple Imputation for Recurrent Events |

delaunay | 2d, 2.5d, and 3d Delaunay Tessellations |

delayed | A Framework for Parallelizing Dependent Tasks |

deldir | Delaunay Triangulation and Dirichlet (Voronoi) Tessellation |

deltaPlotR | Identification of Dichotomous Differential Item Functioning (DIF) using Angoff's Delta Plot Method |

deltaccd | Quantify Rhythmic Gene Co-Expression Relative to a Reference |

dematel | Decision Making Trial and Evaluation Laboratory Technique in R |

demcon | Interfacing with Popular Polity, Institutional, and Constitutional Datasets |

deming | Deming, Theil-Sen, Passing-Bablock and Total Least Squares Regression |

demoGraphic | Providing Demographic Table with the P-Value, Standardized Mean Difference Value |

demoKde | Kernel Density Estimation for Demonstration Purposes |

demoShiny | Runs a 'Shiny' App as Demo or Lists All Demo 'Shiny' Apps |

demodelr | Simulating Differential Equations with Data |

demogR | Analysis of Age-Structured Demographic Models |

demography | Forecasting Mortality, Fertility, Migration and Population Data |

demu | Optimal Design Emulators via Point Processes |

dendRoAnalyst | A Tool for Processing and Analyzing Dendrometer Data |

dendextend | Extending 'dendrogram' Functionality in R |

dendroTools | Linear and Nonlinear Methods for Analyzing Daily and Monthly Dendroclimatological Data |

dendroextras | Extra Functions to Cut, Label and Colour Dendrogram Clusters |

dendrometry | Forest Estimations and Dendrometric Computations |

dendsort | Modular Leaf Ordering Methods for Dendrogram Nodes |

denoiSeq | Differential Expression Analysis Using a Bottom-Up Model |

denoiseR | Regularized Low Rank Matrix Estimation |

denovolyzeR | Statistical Analyses of De Novo Genetic Variants |

densEstBayes | Density Estimation via Bayesian Inference Engines |

denseFLMM | Functional Linear Mixed Models for Densely Sampled Data |

densitr | Analysing Density Profiles from Resistance Drilling of Trees |

densityClust | Clustering by Fast Search and Find of Density Peaks |

densratio | Density Ratio Estimation |

denstrip | Density Strips and Other Methods for Compactly Illustrating Distributions |

denvax | Simple Dengue Test and Vaccinate Cost Thresholds |

depcache | Cache R Expressions, Taking Their Dependencies into Account |

depcoeff | Dependency Coefficients |

depend.truncation | Statistical Methods for the Analysis of Dependently Truncated Data |

depigner | A Utility Package to Help you Deal with "Pignas" |

depmix | Dependent Mixture Models |

depmixS4 | Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4 |

depth | Nonparametric Depth Functions for Multivariate Analysis |

depth.plot | Multivariate Analogy of Quantiles |

depthTools | Depth Tools Package |

dequer | Stacks, Queues, and 'Deques' for R |

derivmkts | Functions and R Code to Accompany Derivatives Markets |

desc | Manipulate DESCRIPTION Files |

descomponer | Seasonal Adjustment by Frequency Analysis |

descr | Descriptive Statistics |

describedata | Miscellaneous Descriptive Functions |

describer | Describe Data in R Using Common Descriptive Statistics |

descriptr | Generate Descriptive Statistics |

descstat | Tools for Descriptive Statistics |

descstatsr | Descriptive Univariate Statistics |

desctable | Produce Descriptive and Comparative Tables Easily |

desiR | Desirability Functions for Ranking, Selecting, and Integrating Data |

designer | 'Shiny' UI Prototype Builder |

designmatch | Matched Samples that are Balanced and Representative by Design |

designr | Balanced Factorial Designs |

designsize | Sample Size Calculation of Various Study Designs |

desirability | Function Optimization and Ranking via Desirability Functions |

desla | Desparsified Lasso Inference for Time Series |

desplot | Plotting Field Plans for Agricultural Experiments |

details | Create Details HTML Tag for Markdown and Package Documentation |

detect | Analyzing Wildlife Data with Detection Error |

detectR | Change Point Detection |

detectRUNS | Detect Runs of Homozygosity and Runs of Heterozygosity in Diploid Genomes |

detectnorm | Detect Nonnormality in Meta-Analysis without Raw Data |

detector | Detect Data Containing Personally Identifiable Information |

detectseparation | Detect and Check for Separation and Infinite Maximum Likelihood Estimates |

detourr | Portable and Performant Tour Animations |

detpack | Density Estimation and Random Number Generation with Distribution Element Trees |

detrendeR | A Graphical User Interface (GUI) to Visualize and Analyze Dendrochronological Data |

detrendr | Detrend Images |

detzrcr | Compare Detrital Zircon Suites |

devEMF | EMF Graphics Output Device |

devFunc | Clear and Condense Argument Check for User-Defined Functions |

devRate | Quantify the Relationship Between Development Rate and Temperature in Ectotherms |

devoid | A Graphic Device that Does Nothing |

devtools | Tools to Make Developing R Packages Easier |

dexter | Data Management and Analysis of Tests |

dexterMST | CML and Bayesian Calibration of Multistage Tests |

dextergui | A Graphical User Interface for Dexter |

df2yaml | Convert Dataframe to 'YAML' |

dfCompare | Compare Two Dataframes and Return Adds, Changes, and Deletes |

dfadjust | Degrees of Freedom Adjustment for Robust Standard Errors |

dfcomb | Phase I/II Adaptive Dose-Finding Design for Combination Studies |

dfcrm | Dose-Finding by the Continual Reassessment Method |

dfdr | Automatic Differentiation of Simple Functions |

dfidx | Indexed Data Frames |

dfmeta | Meta-Analysis of Phase I Dose-Finding Early Clinical Trials |

dfms | Dynamic Factor Models |

dfmta | Phase I/II Adaptive Dose-Finding Design for MTA |

dfoliatR | Detection and Analysis of Insect Defoliation Signals in Tree Rings |

dfoptim | Derivative-Free Optimization |

dformula | Data Manipulation using Formula |

dfped | Extrapolation and Bridging of Adult Information in Early Phase Dose-Finding Paediatrics Studies |

dfphase1 | Phase I Control Charts (with Emphasis on Distribution-Free Methods) |

dfpk | Bayesian Dose-Finding Designs using Pharmacokinetics (PK) for Phase I Clinical Trials |

dfvad | Diewert and Fox's Method of Value Added Growth Decomposition |

dga | Capture-Recapture Estimation using Bayesian Model Averaging |

dggridR | Discrete Global Grids |

dglars | Differential Geometric Least Angle Regression |

dglm | Double Generalized Linear Models |

dgof | Discrete Goodness-of-Fit Tests |

dgpsi | Interface to 'dgpsi' for Deep and Linked Gaussian Process Emulations |

dgumbel | The Gumbel Distribution Functions and Gradients |

dhReg | Dynamic Harmonic Regression |

dhga | Differential Hub Gene Analysis |

dhglm | Double Hierarchical Generalized Linear Models |

dhh | A Heavy-Headed Distribution |

di | Deficit Index (DI) |

diagis | Diagnostic Plot and Multivariate Summary Statistics of Weighted Samples from Importance Sampling |

diagmeta | Meta-Analysis of Diagnostic Accuracy Studies with Several Cutpoints |

diagonals | Block Diagonal Extraction or Replacement |

diagram | Functions for Visualising Simple Graphs (Networks), Plotting Flow Diagrams |

dialr | Parse, Format, and Validate International Phone Numbers |

dialrjars | Required 'libphonenumber' jars for the 'dialr' Package |

dials | Tools for Creating Tuning Parameter Values |

diaplt | Beads Summary Plot of Ranges |

diathor | Calculate Ecological Information and Diatom Based Indices |

dibble | Dimensional Data Frames |

dice | Calculate probabilities of various dice-rolling events |

diceR | Diverse Cluster Ensemble in R |

dichromat | Color Schemes for Dichromats |

dictionaRy | Retrieve the Dictionary Definitions of English Words |

dictionar6 | R6 Dictionary Interface |

did | Treatment Effects with Multiple Periods and Groups |

did2s | Two-Stage Difference-in-Differences Following Gardner (2021) |

didimputation | Imputation Estimator from Borusyak, Jaravel, and Spiess (2021) |

didrooRFM | Compute Recency Frequency Monetary Scores for your Customer Data |

dief | Metrics for Continuous Efficiency |

diemr | Diagnostic Index Expectation Maximisation in R |

dietr | Diet Estimated Trophic Levels |

diezeit | R Interface to the ZEIT ONLINE Content API |

difNLR | DIF and DDF Detection by Non-Linear Regression Models |

difR | Collection of Methods to Detect Dichotomous Differential Item Functioning (DIF) |

difconet | Differential Coexpressed Networks |

diffEnrich | Given a List of Gene Symbols, Performs Differential Enrichment Analysis |

diffIRT | Diffusion IRT Models for Response and Response Time Data |

diffMeshGP | Multi-Fidelity Computer Experiments Using the Tuo-Wu-Yu Model |

diffcor | Fisher's z-Tests Concerning Difference of Correlations |

diffdf | Dataframe Difference Tool |

diffdfs | Compute the Difference Between Data Frames |

diffeR | Metrics of Difference for Comparing Pairs of Maps or Pairs of Variables |

diffeRenTES | Computation of TES-Based Cell Differentiation Trees |

diffee | Fast and Scalable Learning of Sparse Changes in High-Dimensional Gaussian Graphical Model Structure |

diffeqr | Solving Differential Equations (ODEs, SDEs, DDEs, DAEs) |

diffmatchpatch | String Diff, Match, and Patch Utilities |

diffobj | Diffs for R Objects |

diffpriv | Easy Differential Privacy |

diffr | Display Differences Between Two Files using Codediff Library |

diffudist | Diffusion Distance for Complex Networks |

diffusion | Forecast the Diffusion of New Products |

diffusionMap | Diffusion Map |

diffusr | Network Diffusion Algorithms |

diffval | Vegetation Patterns |

diffviewer | HTML Widget to Show File Differences |

digest | Create Compact Hash Digests of R Objects |

digiRhythm | Analyzing Animal's Rhythmicity |

digitTests | Tests for Detecting Irregular Digit Patterns |

digitalDLSorteR | Deconvolution of Bulk RNA-Seq Data Based on Deep Learning |

digitalPCR | Estimate Copy Number for Digital PCR |

digitize | Use Data from Published Plots in R |

dimRed | A Framework for Dimensionality Reduction |

dimensio | Multivariate Data Analysis |

dimensionalAnalysis | Dimensional Analysis |

dimensionsR | Gathering Bibliographic Records from 'Digital Science Dimensions' Using 'DSL' API |

dina | Bayesian Estimation of DINA Model |

dinamic | DiNAMIC A Method To Analyze Recurrent DNA Copy Number Aberrations in Tumors |

dineR | Differential Network Estimation in R |

dineq | Decomposition of (Income) Inequality |

dint | A Toolkit for Year-Quarter, Year-Month and Year-Isoweek Dates |

dipm | Depth Importance in Precision Medicine (DIPM) Method |

diproperm | Conduct Direction-Projection-Permutation Tests and Display Plots |

dipsaus | A Dipping Sauce for Data Analysis and Visualizations |

diptest | Hartigan's Dip Test Statistic for Unimodality - Corrected |

dipw | Debiased Inverse Propensity Score Weighting |

directPA | Direction Analysis for Pathways and Kinases |

directlabels | Direct Labels for Multicolor Plots |

directotree | Creates an Interactive Tree Structure of a Directory |

dirichletprocess | Build Dirichlet Process Objects for Bayesian Modelling |

dirmcmc | Directional Metropolis Hastings Algorithm |

dirmult | Estimation in Dirichlet-Multinomial Distribution |

dirttee | Distributional Regression for Time to Event Data |

disaggR | Two-Steps Benchmarks for Time Series Disaggregation |

disaggregation | Disaggregation Modelling |

disbayes | Bayesian Multi-State Modelling of Chronic Disease Burden Data |

discAUC | Linear and Non-Linear AUC for Discounting Data |

discSurv | Discrete Time Survival Analysis |

discfrail | Cox Models for Time-to-Event Data with Nonparametric Discrete Group-Specific Frailties |

discharge | Fourier Analysis of Discharge Data |

disclap | Discrete Laplace Exponential Family |

disclapmix | Discrete Laplace Mixture Inference using the EM Algorithm |

discnorm | Test for Discretized Normality in Ordinal Data |

discord | Functions for Discordant Kinship Modeling |

discourseGT | Analyze Group Patterns using Graph Theory in Educational Settings |

discoveR | Exploratory Data Analysis System |

discoverableresearch | Checks Title, Abstract and Keywords to Optimise Discoverability |

discreteRV | Create and Manipulate Discrete Random Variables |

discretecdAlgorithm | Coordinate-Descent Algorithm for Learning Sparse Discrete Bayesian Networks |

discretefit | Simulated Goodness-of-Fit Tests for Discrete Distributions |

discretization | Data Preprocessing, Discretization for Classification |

discrim | Model Wrappers for Discriminant Analysis |

disdat | Data for Comparing Species Distribution Modeling Methods |

diseq | Estimation Methods for Markets in Equilibrium and Disequilibrium |

disk.frame | Larger-than-RAM Disk-Based Data Manipulation Framework |

diskImageR | A Pipeline to Analyze Resistance and Tolerance from Drug Disk Diffusion Assays |

dismo | Species Distribution Modeling |

disordR | Non-Ordered Vectors |

dispRity | Measuring Disparity |

disparityfilter | Disparity Filter Algorithm for Weighted Networks |

dispeRse | Simulation of Demic Diffusion with Environmental Constraints |

dispmod | Modelling Dispersion in GLM |

disposables | Create Disposable R Packages for Testing |

dispositionEffect | Analysis of Disposition Effect on Financial Portfolios |

disprofas | Non-Parametric Dissolution Profile Analysis |

disprose | Discriminating Probes Selection |

dissCqN | Multiple Assemblage Dissimilarity for Orders q = 0-N |

dissever | Spatial Downscaling using the Dissever Algorithm |

distTails | A Collection of Full Defined Distribution Tails |

distance.sample.size | Calculates Study Size Required for Distance Sampling |

distances | Tools for Distance Metrics |

distanceto | Calculate Distance to Features |

distantia | Assessing Dissimilarity Between Multivariate Time Series |

distcomp | Computations over Distributed Data without Aggregation |

distcrete | Discrete Distribution Approximations |

distdichoR | Distributional Method for the Dichotomisation of Continuous Outcomes |

distfree.cr | Distribution-Free Confidence Region |

distill | 'R Markdown' Format for Scientific and Technical Writing |

distillML | Model Distillation and Interpretability Methods for Machine Learning Models |

distillery | Method Functions for Confidence Intervals and to Distill Information from an Object |

disto | Unified Interface to Distance, Dissimilarity, Similarity Matrices |

distory | Distance Between Phylogenetic Histories |

distr | Object Oriented Implementation of Distributions |

distrDoc | Documentation for 'distr' Family of R Packages |

distrEllipse | S4 Classes for Elliptically Contoured Distributions |

distrEx | Extensions of Package 'distr' |

distrMod | Object Oriented Implementation of Probability Models |

distrRmetrics | Distribution Classes for Distributions from Rmetrics |

distrSim | Simulation Classes Based on Package 'distr' |

distrTEst | Estimation and Testing Classes Based on Package 'distr' |

distrTeach | Extensions of Package 'distr' for Teaching Stochastics/Statistics in Secondary School |

distreg.vis | Framework for the Visualization of Distributional Regression Models |

distributional | Vectorised Probability Distributions |

distributions3 | Probability Distributions as S3 Objects |

distributionsrd | Distribution Fitting and Evaluation |

distro | Linux Distribution Properties |

distrom | Distributed Multinomial Regression |

distrr | Estimate and Manage Empirical Distributions |

disttools | Distance Object Manipulation Tools |

dittodb | A Test Environment for Database Requests |

div | Report on Diversity and Inclusion in a Corporate Setting |

divDyn | Diversity Dynamics using Fossil Sampling Data |

diveMove | Dive Analysis and Calibration |

diveR | Easily Install and Load Interactive Data Visualization Tools |

diverge | Evolutionary Trait Divergence Between Sister Species and Other Paired Lineages |

diverse | Diversity Measures for Complex Systems |

diversitree | Comparative 'Phylogenetic' Analyses of Diversification |

diversityForest | Innovative Complex Split Procedures in Random Forests Through Candidate Split Sampling |

divest | Get Images Out of DICOM Format Quickly |

divo | Tools for Analysis of Diversity and Similarity in Biological Systems |

divseg | Calculate Diversity and Segregation Indices |

dixon | Nearest Neighbour Contingency Table Analysis |

dixonTest | Dixon's Ratio Test for Outlier Detection |

diyar | Record Linkage and Epidemiological Case Definitions in R |

dkDNA | Diffusion Kernels on a Set of Genotypes |

dkanr | Client for the 'DKAN' API |

dlbayes | Use Dirichlet Laplace Prior to Solve Linear Regression Problem and Do Variable Selection |

dlib | Allow Access to the 'Dlib' C++ Library |

dlm | Bayesian and Likelihood Analysis of Dynamic Linear Models |

dlnm | Distributed Lag Non-Linear Models |

dlookr | Tools for Data Diagnosis, Exploration, Transformation |

dlr | Download and Cache Files Safely |

dlsem | Distributed-Lag Linear Structural Equation Models |

dlstats | Download Stats of R Packages |

dm | Relational Data Models |

dma | Dynamic Model Averaging |

dmai | Divisia Monetary Aggregates Index |

dmbc | Model Based Clustering of Binary Dissimilarity Measurements |

dmdScheme | Domain Specific MetaData Scheme |

dml | Distance Metric Learning in R |

dmlalg | Double Machine Learning Algorithms |

dmm | Dyadic Mixed Model for Pedigree Data |

dmri.tracking | DiST - Diffusion Direction Smoothing and Tracking |

dmtools | Tools for Clinical Data Management |

dmutate | Mutate Data Frames with Random Variates |

dnapath | Differential Network Analysis using Gene Pathways |

dnet | Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology |

dng | Distributions and Gradients |

dnr | Simulate Dynamic Networks using Exponential Random Graph Models (ERGM) Family |

do | Data Operator |

doBy | Groupwise Statistics, LSmeans, Linear Estimates, Utilities |

doFuture | A Universal Foreach Parallel Adapter using the Future API of the 'future' Package |

doMC | Foreach Parallel Adaptor for 'parallel' |

doMPI | Foreach Parallel Adaptor for the Rmpi Package |

doParallel | Foreach Parallel Adaptor for the 'parallel' Package |

doRNG | Generic Reproducible Parallel Backend for 'foreach' Loops |

doRedis | 'Foreach' Parallel Adapter Using the 'Redis' Database |

doSNOW | Foreach Parallel Adaptor for the 'snow' Package |

dobin | Dimension Reduction for Outlier Detection |

dobson | Data from the GLM Book by Dobson and Barnett |

doc2concrete | Measuring Concreteness in Natural Language |

doc2vec | Distributed Representations of Sentences, Documents and Topics |

dockerfiler | Easy Dockerfile Creation from R |

docknitr | Use Docker Images to Process Rmarkdown Blocks |

doconv | Document Conversion to 'PDF' or 'PNG' |

docopt | Command-Line Interface Specification Language |

docopulae | Optimal Designs for Copula Models |

docore | Utility Functions for Scientific Coding |

docreview | Opinionated Documentation Checking |

docstring | Provides Docstring Capabilities to R Functions |

docuSignr | Connect to 'DocuSign' API |

documenter | Documents Files |

docxtools | Tools for R Markdown to Docx Documents |

docxtractr | Extract Data Tables and Comments from 'Microsoft' 'Word' Documents |

dodgr | Distances on Directed Graphs |

doebioresearch | Analysis of Design of Experiments for Biological Research |

doex | The One-Way Heteroscedastic ANOVA Tests |

dogesr | Work with the Doges/Dogaresse Dataset |

domino | R Console Bindings for the 'Domino Command-Line Client' |

domir | Tools to Support Relative Importance Analysis |

donut | Nearest Neighbour Search with Variables on a Torus |

doolkit | Exploration of Dental Surface Topography |

doremi | Dynamics of Return to Equilibrium During Multiple Inputs |

dosearch | Causal Effect Identification from Multiple Incomplete Data Sources |

dosedesignR | Interactive Designing of Dose Finding Studies |

doseminer | Extract Drug Dosages from Free-Text Prescriptions |

dosresmeta | Multivariate Dose-Response Meta-Analysis |

dostats | Compute Statistics Helper Functions |

dotCall64 | Enhanced Foreign Function Interface Supporting Long Vectors |

dotenv | Load Environment Variables from '.env' |

dotgen | Gene-Set Analysis via Decorrelation by Orthogonal Transformation |

dotprofile | Create and Manage Configuration Profiles |

dots | Dot Density Maps |

dotwhisker | Dot-and-Whisker Plots of Regression Results |

doubcens | Survivor Function Estimation for Doubly Interval-Censored Failure Time Data |

double.truncation | Analysis of Doubly-Truncated Data |

doubt | Enable Operators Containing the '?' Symbol |

downlit | Syntax Highlighting and Automatic Linking |

downloader | Download Files over HTTP and HTTPS |

downloadthis | Implement Download Buttons in 'rmarkdown' |

downscale | Downscaling Species Occupancy |

downscaledl | Downscale of RS Images using Deep Learning |

downsize | A Tool to Downsize Large Workflows for Testing |

dowser | B Cell Receptor Phylogenetics Toolkit |

dparser | Port of 'Dparser' Package |

dpcc | Dynamic Programming for Convex Clustering |

dplR | Dendrochronology Program Library in R |

dplbnDE | Discriminative Parameter Learning of Bayesian Networks by Differential Evolution |

dplyr | A Grammar of Data Manipulation |

dplyrAssist | RStudio Addin for Teaching and Learning Data Manipulation Using 'dplyr' |

dpmr | Data Package Manager for R |

dppmix | Determinantal Point Process Mixture Models |

dprint | Print Tabular Data to Graphics Device |

dpseg | Piecewise Linear Segmentation by Dynamic Programming |

dqrng | Fast Pseudo Random Number Generators |

dr | Methods for Dimension Reduction for Regression |

dr4pl | Dose Response Data Analysis using the 4 Parameter Logistic (4pl) Model |

dracor | Decode Draco Format 3D Mesh Data |

dragon | Deep Time Redox Analysis of the Geobiology Ontology Network |

dragonking | Statistical Tools to Identify Dragon Kings |

dragracer | Data Sets for RuPaul's Drag Race |

dragulaR | Drag and Drop Elements in 'Shiny' using 'Dragula Javascript Library' |

drake | A Pipeline Toolkit for Reproducible Computation at Scale |

drat | 'Drat' R Archive Template |

draw | Wrapper Functions for Producing Graphics |

drawer | An Interactive HTML Image Editing Tool |

drawsample | Draw Samples with the Desired Properties from a Data Set |

drc | Analysis of Dose-Response Curves |

drda | Dose-Response Data Analysis |

dreamer | Dose Response Models for Bayesian Model Averaging |

dreamerr | Error Handling Made Easy |

drf | Distributional Random Forests |

drfit | Dose-Response Data Evaluation |

drgee | Doubly Robust Generalized Estimating Equations |

drhur | Learning R with Dr. Hu |

drifter | Concept Drift and Concept Shift Detection for Predictive Models |

drimmR | Estimation, Simulation and Reliability of Drifting Markov Models |

driveR | Prioritizing Cancer Driver Genes Using Genomics Data |

droll | Analyze Roll Distributions |

droptest | Simulates LOX Drop Testing |

drord | Doubly-Robust Estimators for Ordinal Outcomes |

drought | Statistical Modeling and Assessment of Drought |

drpop | Efficient and Doubly Robust Population Size Estimation |

drtmle | Doubly-Robust Nonparametric Estimation and Inference |

drugprepr | Prepare Electronic Prescription Record Data to Estimate Drug Exposure |

drumr | Turn R into a Drum Machine |

ds | Descriptive Statistics |

ds4psy | Data Science for Psychologists |

dsa | Seasonal Adjustment of Daily Time Series |

dsb | Normalize & Denoise Droplet Single Cell Protein Data (CITE-Seq) |

dscore | D-Score for Child Development |

dse | Dynamic Systems Estimation (Time Series Package) |

dsfa | Distributional Stochastic Frontier Analysis |

dslabs | Data Science Labs |

dslice | Dynamic Slicing |

dsm | Density Surface Modelling of Distance Sampling Data |

dsmisc | Data Science Box of Pandora Miscellaneous |

dsmmR | Estimation and Simulation of Drifting Semi-Markov Models |

dsos | Dataset Shift with Outlier Scores |

dsrTest | Tests and Confidence Intervals on Directly Standardized Rates for Several Methods |

dst | Using the Theory of Belief Functions |

dstat | Conditional Sensitivity Analysis for Matched Observational Studies |

dstat2x2xk | Demonstrated Insensitivity to Bias in 2x2xK Contingency Tables |

dtangle | Cell Type Deconvolution from Gene Expressions |

dtgiw | Discrete Transmuted Generalized Inverse Weibull Distribution |

dti | Analysis of Diffusion Weighted Imaging (DWI) Data |

dtp | Dynamic Panel Threshold Model |

dtpcrm | Dose Transition Pathways for Continual Reassessment Method |

dtplyr | Data Table Back-End for 'dplyr' |

dtrSurv | Dynamic Treatment Regimes for Survival Analysis |

dtrackr | Track your Data Pipelines |

dtt | Discrete Trigonometric Transforms |

dttr2 | Manipulate Date, POSIXct and hms Vectors |

dtts | 'data.table' Time-Series |

dtw | Dynamic Time Warping Algorithms |

dtwSat | Time-Weighted Dynamic Time Warping for Satellite Image Time Series Analysis |

dtwclust | Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance |

dual | Automatic Differentiation with Dual Numbers |

dualtrees | Decimated and Undecimated 2D Complex Dual-Tree Wavelet Transform |

duawranglr | Securely Wrangle Dataset According to Data Usage Agreement |

dub | Unpacking Assignment for Lists via Pattern Matching |

duckdb | DBI Package for the DuckDB Database Management System |

duckduckr | Simple Client for the DuckDuckGo Instant Answer API |

dumbbell | Displaying Changes Between Two Points Using Dumbbell Plots |

dummy | Automatic Creation of Dummies with Support for Predictive Modeling |

dundermifflin | The Office Quotes on-Demand |

dunn.test | Dunn's Test of Multiple Comparisons Using Rank Sums |

dupree | Identify Duplicated R Code in a Project |

dvir | Disaster Victim Identification |

dvmisc | Convenience Functions, Moving Window Statistics, and Graphics |

dvqcc | Dynamic VAR - Based Control Charts for Batch Process Monitoring |

dwdradar | Read Binary Radar Files from 'DWD' (German Weather Service) |

dwlm | Doubly Weighted Linear Model |

dwp | Density-Weighted Proportion |

dyads | Dyadic Network Analysis |

dycdtools | Tools for DYRESM-CAEDYM Model Development: Calibration Assistant and Post-Processing |

dydea | Detection of Chaotic and Regular Intervals in the Data |

dygraphs | Interface to 'Dygraphs' Interactive Time Series Charting Library |

dymo | Dynamic Mode Decomposition for Multivariate Time Feature Prediction |

dyn | Time Series Regression |

dyn.log | Dynamic Logging for R Inspired by Configuration Driven Development |

dynBiplotGUI | Full Interactive GUI for Dynamic Biplot in R |

dynCorr | Dynamic Correlation Package |

dynRB | Dynamic Range Boxes |

dynaSpec | Dynamic Spectrogram Visualizations |

dynaTree | Dynamic Trees for Learning and Design |

dynamAedes | A Unified Mechanistic Model for the Population Dynamics of Invasive Aedes Mosquitoes |

dynamac | Dynamic Simulation and Testing for Single-Equation ARDL Models |

dynamic | DFI Cutoffs for Latent Variable Models |

dynamicTreeCut | Methods for Detection of Clusters in Hierarchical Clustering Dendrograms |

dynamichazard | Dynamic Hazard Models using State Space Models |

dynamite | Bayesian Modeling and Causal Inference for Multivariate Longitudinal Data |

dynatop | An Implementation of Dynamic TOPMODEL Hydrological Model in R |

dynatopGIS | Algorithms for Helping Build Dynamic TOPMODEL Implementations from Spatial Data |

dyncomp | Complexity of Short and Coarse-Grained Time Series |

dyndimred | Dimensionality Reduction Methods in a Common Format |

dynetNLAResistance | Resisting Neighbor Label Attack in a Dynamic Network |

dynfeature | Feature Importance for Dynamic Processes |

dyngen | A Multi-Modal Simulator for Spearheading Single-Cell Omics Analyses |

dynlm | Dynamic Linear Regression |

dynmix | Estimation of Dynamic Finite Mixtures |

dynpanel | Dynamic Panel Data Models |

dynparam | Creating Meta-Information for Parameters |

dynplot | Visualising Single-Cell Trajectories |

dynpred | Companion Package to "Dynamic Prediction in Clinical Survival Analysis" |

dynprog | Dynamic Programming Domain-Specific Language |

dynr | Dynamic Models with Regime-Switching |

dynsbm | Dynamic Stochastic Block Models |

dynsim | Dynamic Simulations of Autoregressive Relationships |

dynsurv | Dynamic Models for Survival Data |

dyntaper | Dynamic Stem Profile Models, AKA Tree Taper Equations |

dynutils | Common Functionality for the 'dynverse' Packages |

dynwrap | Representing and Inferring Single-Cell Trajectories |

E4tools | Management and Processing Tools for Data Produced by the Empatica E4 |

EATME | Exponentially Weighted Moving Average with Adjustments to Measurement Error |

EAinference | Estimator Augmentation and Simulation-Based Inference |

EBCHS | An Empirical Bayes Method for Chi-Squared Data |

EBMAforecast | Estimate Ensemble Bayesian Model Averaging Forecasts using Gibbs Sampling or EM-Algorithms |

EBPRS | Derive Polygenic Risk Score Based on Emprical Bayes Theory |

EBglmnet | Empirical Bayesian Lasso and Elastic Net Methods for Generalized Linear Models |

EBrank | Empirical Bayes Ranking |

ECGofTestDx | A Goodness-of-Fit Test for Elliptical Distributions with Diagnostic Capabilities |

ECLRMC | Ensemble Correlation-Based Low-Rank Matrix Completion |

ECOSolveR | Embedded Conic Solver in R |

ECOTOXr | Download and Extract Data from US EPA's ECOTOX Database |

ECTTDNN | Cointegration Based Timedelay Neural Network Model |

ECctmc | Simulation from Endpoint-Conditioned Continuous Time Markov Chains |

ECharts2Shiny | Embedding Interactive Charts Generated with ECharts Library into Shiny Applications |

ECoL | Complexity Measures for Supervised Problems |

EDA | Energy Decomposition Analysis |

EDCimport | Import Data from EDC Software |

EDFtest | Goodness of Fit Based on Empirical Distribution Function |

EDISON | Network Reconstruction and Changepoint Detection |

EDIutils | An API Client for the Environmental Data Initiative Repository |

EDMeasure | Energy-Based Dependence Measures |

EDNE.EQ | Implements the EDNE-Test for Equivalence |

EDOIF | Empirical Distribution Ordering Inference Framework (EDOIF) |

EDOtrans | Euclidean Distance-Optimized Data Transformation |

EEM | Read and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data |

EEMDSVR | Ensemble Empirical Mode Decomposition and Its Variant Based Support Vector Regression Model |

EEMDelm | Ensemble Empirical Mode Decomposition and Its Variant Based ELM Model |

EEMDlstm | EEMD Based LSTM Model for Time Series Forecasting |

EESPCA | Eigenvectors from Eigenvalues Sparse Principal Component Analysis (EESPCA) |

EFA.MRFA | Dimensionality Assessment Using Minimum Rank Factor Analysis |

EFA.dimensions | Exploratory Factor Analysis Functions for Assessing Dimensionality |

EFAtools | Fast and Flexible Implementations of Exploratory Factor Analysis Tools |

EFAutilities | Utility Functions for Exploratory Factor Analysis |

EFDR | Wavelet-Based Enhanced FDR for Detecting Signals from Complete or Incomplete Spatially Aggregated Data |

EFS | Tool for Ensemble Feature Selection |

EGAnet | Exploratory Graph Analysis â€“ a Framework for Estimating the Number of Dimensions in Multivariate Data using Network Psychometrics |

EGRET | Exploration and Graphics for RivEr Trends |

EGRETci | Exploration and Graphics for RivEr Trends Confidence Intervals |

EGRNi | Ensemble Gene Regulatory Network Inference |

EHR | Electronic Health Record (EHR) Data Processing and Analysis Tool |

EHRtemporalVariability | Delineating Temporal Dataset Shifts in Electronic Health Records |

EIAdata | R Wrapper for the Energy Information Administration (EIA) API |

EIX | Explain Interactions in 'XGBoost' |

EKMCMC | MCMC Procedures for Estimating Enzyme Kinetics Constants |

EL | Two-Sample Empirical Likelihood |

EL2Surv | Empirical Likelihood (EL) for Comparing Two Survival Functions |

ELCIC | The Empirical Likelihood-Based Consistent Information Criterion |

ELISAtools | ELISA Data Analysis with Batch Correction |

ELMR | Extreme Machine Learning (ELM) |

ELMSO | Implementation of the Efficient Large-Scale Online Display Advertising Algorithm |

ELT | Experience Life Tables |

ELYP | Empirical Likelihood Analysis for the Cox Model and Yang-Prentice (2005) Model |

EM.Fuzzy | EM Algorithm for Maximum Likelihood Estimation by Non-Precise Information |

EMAS | Epigenome-Wide Mediation Analysis Study |

EMAtools | Data Management Tools for Real-Time Monitoring/Ecological Momentary Assessment Data |

EMCluster | EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution |

EMD | Empirical Mode Decomposition and Hilbert Spectral Analysis |

EMDANNhybrid | Ensemble Machine Learning Hybrid Model |

EMDSVRhybrid | Hybrid Machine Learning Model |

EML | Read and Write Ecological Metadata Language Files |

EMLI | Computationally Efficient Maximum Likelihood Identification of Linear Dynamical Systems |

EMMAgeo | End-Member Modelling of Grain-Size Data |

EMMIXSSL | Semi-Supervised Gaussian Mixture Model with a Missing-Data Mechanism |

EMMIXgene | A Mixture Model-Based Approach to the Clustering of Microarray Expression Data |

EMMIXmfa | Mixture Models with Component-Wise Factor Analyzers |

EMMLi | A Maximum Likelihood Approach to the Analysis of Modularity |

EMMREML | Fitting Mixed Models with Known Covariance Structures |

EMP | Expected Maximum Profit Classification Performance Measure |

EMSC | Extended Multiplicative Signal Correction |

EMSNM | EM Algorithm for Sigmoid Normal Model |

EMSS | Some EM-Type Estimation Methods for the Heckman Selection Model |

EMSaov | The Analysis of Variance with EMS |

EMT | Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate Data |

EMbC | Expectation-Maximization Binary Clustering |

EMpeaksR | Conducting the Peak Fitting Based on the EM Algorithm |

ENMeval | Automated Tuning and Evaluations of Ecological Niche Models |

EPGMr | Implementation of the Everglades Phosphorus Gradient Model |

EPT | Ensemble Patch Transform, Visualization and Decomposition |

EPX | Ensemble of Phalanxes |

EQL | Extended-Quasi-Likelihood-Function (EQL) |

EQUIVNONINF | Testing for Equivalence and Noninferiority |

ER | Effect + Residual Modelling |

ERP | Significance Analysis of Event-Related Potentials Data |

ERSA | Exploratory Regression 'Shiny' App |

ESG | A Package for Asset Projection |

ESTER | Efficient Sequential Testing with Evidence Ratios |

EScvtmle | Experiment-Selector CV-TMLE for Integration of Observational and RCT Data |

ETAS | Modeling Earthquake Data Using 'ETAS' Model |

ETC | Equivalence to Control |

ETLUtils | Utility Functions to Execute Standard Extract/Transform/Load Operations (using Package 'ff') on Large Data |

EUfootball | Football Match Data of European Leagues |

EVI | Epidemic Volatility Index as an Early-Warning Tool |

EValue | Sensitivity Analyses for Unmeasured Confounding and Other Biases in Observational Studies and Meta-Analyses |

EWGoF | Goodness-of-Fit Tests for the Exponential and Two-Parameter Weibull Distributions |

EWS | Early Warning System |

EXRQ | Extreme Regression of Quantiles |

EZtune | Tunes AdaBoost, Elastic Net, Support Vector Machines, and Gradient Boosting Machines |

Eagle | Multiple Locus Association Mapping on a Genome-Wide Scale |

Ease | Simulating Explicit Population Genetics Models |

EasyABC | Efficient Approximate Bayesian Computation Sampling Schemes |

EasyDescribe | A Convenient Way of Descriptive Statistics |

EasyMx | Easy Model-Builder Functions for 'OpenMx' |

EbayesThresh | Empirical Bayes Thresholding and Related Methods |

Ecdat | Data Sets for Econometrics |

Ecfun | Functions for 'Ecdat' |

EcoDiet | Estimating a Diet Matrix from Biotracer and Stomach Content Data |

EcoEnsemble | A General Framework for Combining Ecosystem Models |

EcoIndR | Ecological Indicators |

EcoNetGen | Simulate and Sample from Ecological Interaction Networks |

EcoTroph | An Implementation of the EcoTroph Ecosystem Modelling Approach |

EcoVirtual | Simulation of Ecological Models |

Ecohydmod | Ecohydrological Modelling |

EconDemand | General Analysis of Various Economics Demand Systems |

EcotoneFinder | Characterising and Locating Ecotones and Communities |

Ecume | Equality of 2 (or k) Continuous Univariate and Multivariate Distributions |

EdSurvey | Analysis of NCES Education Survey and Assessment Data |

EffectLiteR | Average and Conditional Effects |

EffectStars | Visualization of Categorical Response Models |

EffectStars2 | Effect Stars |

EffectTreat | Prediction of Therapeutic Success |

EfficientMaxEigenpair | Efficient Initials for Computing the Maximal Eigenpair |

EgoCor | Simple Presentation of Estimated Exponential Semi-Variograms |

EigenR | Complex Matrix Algebra with 'Eigen' |

EleChemr | Electrochemical Reactions Simulation |

ElliptCopulas | Inference of Elliptical Distributions and Copulas |

EloChoice | Preference Rating for Visual Stimuli Based on Elo Ratings |

EloOptimized | Optimized Elo Rating Method for Obtaining Dominance Ranks |

EloRating | Animal Dominance Hierarchies by Elo Rating |

EloSteepness | Bayesian Dominance Hierarchy Steepness via Elo Rating and David's Scores |

ElstonStewart | Elston-Stewart Algorithm |

EmbedSOM | Fast Embedding Guided by Self-Organizing Map |

EmiR | Evolutionary Minimizer for R |

EmiStatR | Emissions and Statistics in R for Wastewater and Pollutants in Combined Sewer Systems |

EmissV | Tools for Create Emissions for Air Quality Models |

EmpiricalCalibration | Routines for Performing Empirical Calibration of Observational Study Estimates |

EncDNA | Encoding of Nucleotide Sequences into Numeric Feature Vectors |

EnergyOnlineCPM | Distribution Free Multivariate Control Chart Based on Energy Test |

EngrExpt | Data sets from "Introductory Statistics for Engineering Experimentation" |

EnrichIntersect | Enrichment Analysis and Intersecting Sankey Diagram |

EnsCat | Clustering of Categorical Data |

EnsembleBase | Extensible Package for Parallel, Batch Training of Base Learners for Ensemble Modeling |

EnsembleCV | Extensible Package for Cross-Validation-Based Integration of Base Learners |

EnsemblePCReg | Extensible Package for Principal-Component-Regression-Based Heterogeneous Ensemble Meta-Learning |

EnsemblePenReg | Extensible Classes and Methods for Penalized-Regression-Based Integration of Base Learners |

EntropyEstimation | Estimation of Entropy and Related Quantities |

EntropyMCMC | MCMC Simulation and Convergence Evaluation using Entropy and Kullback-Leibler Divergence Estimation |

EnvCpt | Detection of Structural Changes in Climate and Environment Time Series |

EnvExpInd | Environmental Exposure on the Individual Level |

EnvNJ | Whole Genome Phylogenies Using Sequence Environments |

EnvNicheR | Niche Estimation |

EnvStats | Package for Environmental Statistics, Including US EPA Guidance |

EnviroPRA | Environmental Probabilistic Risk Assessment Tools |

Epi | Statistical Analysis in Epidemiology |

EpiContactTrace | Epidemiological Tool for Contact Tracing |

EpiCurve | Plot an Epidemic Curve |

EpiDynamics | Dynamic Models in Epidemiology |

EpiEstim | Estimate Time Varying Reproduction Numbers from Epidemic Curves |

EpiILM | Spatial and Network Based Individual Level Models for Epidemics |

EpiILMCT | Continuous Time Distance-Based and Network-Based Individual Level Models for Epidemics |

EpiInvert | Variational Techniques in Epidemiology |

EpiLPS | A Bayesian Tool for Fast and Flexible Estimation of the Reproduction Number |

EpiModel | Mathematical Modeling of Infectious Disease Dynamics |

EpiReport | Epidemiological Report |

EpiSemble | Ensemble Based Machine Learning Approach for Predicting Methylation States |

EpiSignalDetection | Signal Detection Analysis |

EpiTest | Test for Gene x Gene Interactions in Bi-Parental Populations |

EpistemicGameTheory | Constructing an Epistemic Model for the Games with Two Players |

Equalden.HD | Testing the Equality of a High Dimensional Set of Densities |

EquiSurv | Modeling, Confidence Intervals and Equivalence of Survival Curves |

EstCRM | Calibrating Parameters for the Samejima's Continuous IRT Model |

EstHer | Estimation of Heritability in High Dimensional Sparse Linear Mixed Models using Variable Selection |

EstMix | Tumor Clones Percentage Estimations |

EstimDiagnostics | Diagnostic Tools and Unit Tests for Statistical Estimators |

EstimateGroupNetwork | Perform the Joint Graphical Lasso and Selects Tuning Parameters |

EstimationTools | Maximum Likelihood Estimation for Probability Functions from Data Sets |

EthSEQ | Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data |

EuclideanSD | An Euclidean View of Center and Spread |

EurosarcBayes | Bayesian Single Arm Sample Size Calculation Software |

EvCombR | Evidence Combination in R |

Evacluster | Evaluation Clustering Methods for Disease Subtypes Diagnosis |

EvalEst | Dynamic Systems Estimation - Extensions |

EvaluateCore | Quality Evaluation of Core Collections |

EvaluationMeasures | Collection of Model Evaluation Measure Functions |

Evapotranspiration | Modelling Actual, Potential and Reference Crop Evapotranspiration |

EventDetectGUI | Graphical User Interface for the 'EventDetectR' Package |

EventDetectR | Event Detection Framework |

EventStudy | Event Study Analysis |

EventWinRatios | Event-Specific Win Ratios for Terminal and Non-Terminal Events |

EvidenceSynthesis | Synthesizing Causal Evidence in a Distributed Research Network |

EviewsR | A Seamless Integration of 'EViews' and R |

EvoPhylo | Pre- And Postprocessing of Morphological Data from Relaxed Clock Bayesian Phylogenetics |

EvolutionaryGames | Important Concepts of Evolutionary Game Theory |

Evomorph | Evolutionary Morphometric Simulation |

EwR | Econometrics with R |

ExNRuleEnsemble | A k Nearest Neibour Ensemble Based on Extended Neighbourhood Rule |

ExPanDaR | Explore Your Data Interactively |

ExPosition | Exploratory Analysis with the Singular Value Decomposition |

Exact | Unconditional Exact Test |

ExactCIdiff | Inductive Confidence Intervals for the Difference Between Two Proportions |

ExactMed | Exact Mediation Analysis for Binary Outcomes |

ExactMultinom | Multinomial Goodness-of-Fit Tests |

ExamPAData | Data Sets for Predictive Analytics Exam |

ExceedanceTools | Confidence/Credible Regions for Exceedance Sets and Contour Lines |

ExcelFunctionsR | Imports Excel Functions to R |

ExcessMass | Excess Mass Calculation and Plots |

ExclusionTable | Creating Tables of Excluded Observations |

ExhaustiveSearch | A Fast and Scalable Exhaustive Feature Selection Framework |

ExomeDepth | Calls Copy Number Variants from Targeted Sequence Data |

ExpAnalysis3d | Pacote Para Analise De Experimentos Com Graficos De Superficie Resposta |

ExpDE | Modular Differential Evolution for Experimenting with Operators |

ExpDes | Experimental Designs Package |

ExpDes.pt | Pacote Experimental Designs (Portugues) |

ExpGenetic | Non-Additive Expression Analysis of Hybrid Offspring |

ExpImage | Tool For Analysis of Images in Experiments |

ExpRep | Experiment Repetitions |

ExpertChoice | Design of Discrete Choice and Conjoint Analysis |

ExplainPrediction | Explanation of Predictions for Classification and Regression Models |

ExplodeLayout | Calculate Exploded Coordinates Based on Original Node Coordinates and Node Clustering Membership |

ExposR | Models Topographic Exposure to Hurricane Winds |

ExtDist | Extending the Range of Functions for Probability Distributions |

ExtMallows | An Extended Mallows Model and Its Hierarchical Version for Ranked Data Aggregation |

ExtractTrainData | Extract Values from Raster |

ExtremalDep | Extremal Dependence Models |

ExtremeBounds | Extreme Bounds Analysis (EBA) |

ExtremeRisks | Extreme Risk Measures |

e1071 | Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien |

eAnalytics | Dynamic Web-Based Analytics for the Energy Industry |

eBsc | "Empirical Bayes Smoothing Splines with Correlated Errors" |

eCAR | Eigenvalue CAR Models |

eChem | Simulations for Electrochemistry Experiments |

eDMA | Dynamic Model Averaging with Grid Search |

eFRED | Fetch Data from the Federal Reserve Economic Database |

eGST | Leveraging eQTLs to Identify Individual-Level Tissue of Interest for a Complex Trait |

eHDPrep | Quality Control and Semantic Enrichment of Datasets |

eHOF | Extended HOF (Huisman-Olff-Fresco) Models |

eList | List Comprehension and Tools |

eMLEloglin | Fitting log-Linear Models in Sparse Contingency Tables |

eNchange | Ensemble Methods for Multiple Change-Point Detection |

ePCR | Ensemble Penalized Cox Regression for Survival Prediction |

eRTG3D | Empirically Informed Random Trajectory Generation in 3-D |

eRm | Extended Rasch Modeling |

eSDM | Ensemble Tool for Predictions from Species Distribution Models |

eSIR | Extended State-Space SIR Models |

eadrm | Fitting Dose-Response Models Using an Evolutionary Algorithm |

eaf | Plots of the Empirical Attainment Function |

earlyR | Estimation of Transmissibility in the Early Stages of a Disease Outbreak |

earlygating | Properties of Bayesian Early Gating Designs |

earlywarnings | Early Warning Signals for Critical Transitions in Time Series |

earth | Multivariate Adaptive Regression Splines |

earthtide | Parallel Implementation of 'ETERNA 3.40' for Prediction and Analysis of Earth Tides |

earthtones | Derive a Color Palette from a Particular Location on Earth |

easyAHP | Analytic Hierarchy Process (AHP) |

easyCODA | Compositional Data Analysis in Practice |

easyDes | An Easy Way to Descriptive Analysis |

easyDifferentialGeneCoexpression | Easily Performs Differential Coexpression Analysis |

easyNCDF | Tools to Easily Read/Write NetCDF Files into/from Multidimensional R Arrays |

easyPSID | Reading, Formatting, and Organizing the Panel Study of Income Dynamics (PSID) |

easyPubMed | Search and Retrieve Scientific Publication Records from PubMed |

easySVG | An Easy SVG Basic Elements Generator |

easySdcTable | Easy Interface to the Statistical Disclosure Control Package 'sdcTable' Extended with Own Implementation of 'GaussSuppression' |

easyVerification | Ensemble Forecast Verification for Large Data Sets |

easyalluvial | Generate Alluvial Plots with a Single Line of Code |

easyanova | Analysis of Variance and Other Important Complementary Analyses |

easycensus | Quickly Find, Extract, and Marginalize U.S. Census Tables |

easycsv | Load Multiple 'csv' and 'txt' Tables |

easydb | Easily Connect to Common Types of Databases |

easylabel | Interactive Scatter Plot and Volcano Plot Labels |

easynls | Easy Nonlinear Model |

easypackages | Easy Loading and Installing of Packages |

easypower | Sample Size Estimation for Experimental Designs |

easyr | Helpful Functions from Oliver Wyman Actuarial Consulting |

easyreg | Easy Regression |

easystats | Framework for Easy Statistical Modeling, Visualization, and Reporting |

eat | Efficiency Analysis Trees |

eatATA | Create Constraints for Small Test Assembly Problems |

eatDB | Spreadsheet Interface for Relational Databases |

eatGADS | Data Management of Large Hierarchical Data |

eatRep | Educational Assessment Tools for Replication Methods |

eatTools | Miscellaneous Functions for the Analysis of Educational Assessments |

ebGenotyping | Genotyping and SNP Detection using Next Generation Sequencing Data |

eba | Elimination-by-Aspects Models |

ebal | Entropy Reweighting to Create Balanced Samples |

ebci | Robust Empirical Bayes Confidence Intervals |

ebdbNet | Empirical Bayes Estimation of Dynamic Bayesian Networks |

ebirdst | Access and Analyze eBird Status and Trends Data |

ebmc | Ensemble-Based Methods for Class Imbalance Problem |

ebnm | Solve the Empirical Bayes Normal Means Problem |

ebreg | Implementation of the Empirical Bayes Method |

ebvcube | Working with netCDF for Essential Biodiversity Variables |

ec50estimator | An Automated Way to Estimate EC50 for Stratified Datasets |

ecb | Programmatic Access to the European Central Bank's Statistical Data Warehouse |

ecd | Elliptic Lambda Distribution and Option Pricing Model |

ecdfHT | Empirical CDF for Heavy Tailed Data |

ecespa | Functions for Spatial Point Pattern Analysis |

ech | Toolbox for ECH with R |

echarts4r | Create Interactive Graphs with 'Echarts JavaScript' Version 5 |

echarty | Minimal R/Shiny Interface to JavaScript Library 'ECharts' |

echelon | The Echelon Analysis and the Detection of Spatial Clusters using Echelon Scan Method |

echo.find | Finding Rhythms Using Extended Circadian Harmonic Oscillators (ECHO) |

echogram | Echogram Visualisation and Analysis |

echor | Access EPA 'ECHO' Data |

ecipex | Efficient Calculation of Fine Structure Isotope Patterns via Fourier Transforms of Simplex-Based Elemental Models |

eclust | Environment Based Clustering for Interpretable Predictive Models in High Dimensional Data |

ecm | Build Error Correction Models |

ecmwfr | Interface to 'ECMWF' and 'CDS' Data Web Services |

ecoCopula | Graphical Modelling and Ordination using Copulas |

ecochange | Integrating Ecosystem Remote Sensing Products to Derive EBV Indicators |

ecocomDP | Tools to Create, Use, and Convert ecocomDP Data |

ecodist | Dissimilarity-Based Functions for Ecological Analysis |

ecolMod | "A Practical Guide to Ecological Modelling - Using R as a Simulation Platform" |

ecolTest | Community Ecology Tests |

ecolottery | Coalescent-Based Simulation of Ecological Communities |

econet | Estimation of Parameter-Dependent Network Centrality Measures |

econetwork | Analyzing Ecological Networks |

economiccomplexity | Computational Methods for Economic Complexity |

econullnetr | Null Model Analysis for Ecological Networks |

ecopower | Power Estimates and Equivalence Testing for Multivariate Data |

ecoreg | Ecological Regression using Aggregate and Individual Data |

ecorest | Conducts Analyses Informing Ecosystem Restoration Decisions |

ecosim | Toolbox for Aquatic Ecosystem Modeling |

ecospace | Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks |

ecospat | Spatial Ecology Miscellaneous Methods |

ecostats | Code and Data Accompanying the Eco-Stats Text (Warton 2022) |

ecostatscale | Statistical Scaling Functions for Ecological Systems |

ecotox | Analysis of Ecotoxicology |

ecotoxicology | Methods for Ecotoxicology |

ecotraj | Ecological Trajectory Analysis |

ecoval | Procedures for Ecological Assessment of Surface Waters |

ecp | Non-Parametric Multiple Change-Point Analysis of Multivariate Data |

ecpc | Flexible Co-Data Learning for High-Dimensional Prediction |

ecr | Evolutionary Computation in R |

ectotemp | Quantitative Estimates of Small Ectotherm Temperature Regulation Effectiveness |

ed50 | Estimate ED50 and Its Confidence Interval |

ed50simulation | Estimate ED50 and Its Confidence Interval |

eda4treeR | Experimental Design and Analysis for Tree Improvement |

edbuildmapr | Download School District Geospatial Data, Perform Spatial Analysis, and Create Formatted Exportable Maps |

edcpR | Ecological Data Collection and Processing Package |

eddington | Compute a Cyclist's Eddington Number |

edeaR | Exploratory and Descriptive Event-Based Data Analysis |

edecob | Event Detection Using Confidence Bounds |

edf | Read Data from European Data Format (EDF and EDF+) Files |

edfReader | Reading EDF(+) and BDF(+) Files |

edfun | Creating Empirical Distribution Functions |

edgar | Tool for the U.S. SEC EDGAR Retrieval and Parsing of Corporate Filings |

edgarWebR | SEC Filings Access |

edgeCorr | Spatial Edge Correction |

edgebundle | Algorithms for Bundling Edges in Networks and Visualizing Flow and Metro Maps |

edgebundleR | Circle Plot with Bundled Edges |

edgedata | Datasets that Support the EDGE Server DIY Logic |

edibble | Designing Comparative Experiments |

edina | Bayesian Estimation of an Exploratory Deterministic Input, Noisy and Gate Model |

editData | 'RStudio' Addin for Editing a 'data.frame' |

editrules | Parsing, Applying, and Manipulating Data Cleaning Rules |

edl | Toolbox for Error-Driven Learning Simulations with Two-Layer Networks |

edlibR | R Integration for Edlib, the C/C++ Library for Exact Pairwise Sequence Alignment using Edit (Levenshtein) Distance |

edmcr | Euclidean Distance Matrix Completion Tools |

edmdata | Data Sets for Psychometric Modeling |

edstan | Stan Models for Item Response Theory |

educationdata | Retrieve Records from the Urban Institute's Education Data Portal API |

educineq | Compute and Decompose Inequality in Education |

edwards97 | Langmuir Semi-Empirical Coagulation Model |

eechidna | Exploring Election and Census Highly Informative Data Nationally for Australia |

eefAnalytics | Robust Analytical Methods for Evaluating Educational Interventions using Randomised Controlled Trials Designs |

eegkit | Toolkit for Electroencephalography Data |

eegkitdata | Electroencephalography Toolkit Datasets |

eel | Extended Empirical Likelihood |

eemR | Tools for Pre-Processing Emission-Excitation-Matrix (EEM) Fluorescence Data |

eemdARIMA | EEMD Based Auto Regressive Integrated Moving Average Model |

eemdTDNN | EEMD and Its Variant Based Time Delay Neural Network Model |

eeptools | Convenience Functions for Education Data |

eesim | Simulate and Evaluate Time Series for Environmental Epidemiology |

ef | Modelling Framework for the Estimation of Salmonid Abundance |

efdm | Simulate Forest Resources with the European Forestry Dynamics Model |

eff2 | Efficient Least Squares for Total Causal Effects |

effectR | Predicts Oomycete Effectors |

effects | Effect Displays for Linear, Generalized Linear, and Other Models |

effectsize | Indices of Effect Size |

effectsizescr | Indices for Single-Case Research |

efflog | The Causal Effects for a Causal Loglinear Model |

effsize | Efficient Effect Size Computation |

eflm | Efficient Fitting of Linear and Generalized Linear Models |

efreadr | Read European Eddy Fluxes CSV Files |

ega | Error Grid Analysis |

egg | Extensions for 'ggplot2': Custom Geom, Custom Themes, Plot Alignment, Labelled Panels, Symmetric Scales, and Fixed Panel Size |

eggCounts | Hierarchical Modelling of Faecal Egg Counts |

egor | Import and Analyse Ego-Centered Network Data |

eha | Event History Analysis |

ehaGoF | Calculates Goodness of Fit Statistics |

ehelp | Enhanced Help to Enable "Docstring"-Comments in Users Functions |

ei | Ecological Inference |

ei.Datasets | Real Datasets for Assessing Ecological Inference Algorithms |

eiPack | Ecological Inference and Higher-Dimension Data Management |

eia | API Wrapper for 'US Energy Information Administration' Open Data |

eicm | Explicit Interaction Community Models |

eigenmodel | Semiparametric Factor and Regression Models for Symmetric Relational Data |

eikosograms | The Picture of Probability |

eimpute | Efficiently Impute Large Scale Incomplete Matrix |

einet | Effective Information and Causal Emergence |

einsum | Einstein Summation |

eiopaR | Access to RFR (Risk-Free Rate) Curves Produced by the EIOPA |

eirm | Explanatory Item Response Modeling for Dichotomous and Polytomous Items |

eive | An Algorithm for Reducing Errors-in-Variable Bias in Simple Linear Regression |