addStates |
Adds a bar representing state sequence. |
createTransition |
Smoothing a discrete time series. |
dmvnorm.hsmm |
Emission ensity function for a multivariate normal emission distribution |
dnorm.hsmm |
Emission density function for normal emission distribution |
dpois.hsmm |
Emission density function for Poisson emission distribution |
gammafit |
Parameter estimation for the Gamma distribution |
hmmfit |
fit a hidden Markov model |
hmmspec |
Specificatin of HMMs |
hsmmfit |
fit a hidden semi-Markov model |
hsmmspec |
Hidden semi-Markov model specification |
mstep.mvnorm |
Performs re-estimation (the M-step) for a multivariate normal emission distribution |
mstep.norm |
Performs re-estimation (the M-step) for a normal emission distribution |
mstep.pois |
Performs re-estimation (the M-step) for a Poisson emission distribution |
plot.hsmm |
Plot function for hsmms |
plot.hsmm.data |
Plot function for hsmm data |
predict.hmm |
Prediction function for hmm |
predict.hmmspec |
Prediction function for hmmspec |
predict.hsmm |
Prediction for hsmms |
predict.hsmmspec |
Prediction for hsmmspec |
predict.smoothDiscrete |
Smoothing a discrete time series. |
print.hmm |
Print method for hmm objects |
print.hmmspec |
Print function for hmmspec |
print.hsmmspec |
Print function for hsmmspec |
print.smoothDiscrete |
Smoothing a discrete time series. |
reproai |
Artificial insemination times for seven cows |
reprocows |
Reproductive data from seven dairy cows |
reproppa |
Observed lengths of post-partum anoestrus for 73 dairy cows |
rmvnorm.hsmm |
Random number generation from a multivariate normal distributed emission distribution |
rnorm.hsmm |
Random number generation from a normally distributed emission distribution |
rpois.hsmm |
Random number generation from a Poisson distributed emission distribution |
sim.mc |
Markov chain simulation |
simulate.hmmspec |
Simulation of hidden Markov models |
simulate.hsmmspec |
Simulation for HSMMs |
smooth.discrete |
Smoothing a discrete time series. |
summary.hmm |
Summary method for hmm objects |
summary.hsmm |
Summary function for hsmm |
summary.smoothDiscrete |
Smoothing a discrete time series. |