A Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated]

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Documentation for package ‘aroma.apd’ version 0.7.0

• DESCRIPTION file.
• Package NEWS.

Help Pages

aroma.apd-package	Package aroma.apd
aroma.apd	Package aroma.apd
cdfToApdMap	Generates an APD read map file from an Affymetrix CDF file
cdfToApdMap.default	Generates an APD read map file from an Affymetrix CDF file
celToApd	Generates an APD file from an Affymetrix CEL file
celToApd.default	Generates an APD file from an Affymetrix CEL file
createApd	Creates an Affymetrix probe data (APD) file
createApd.default	Creates an Affymetrix probe data (APD) file
findApdMap	Search for APD map files in multiple directories
findApdMap.default	Search for APD map files in multiple directories
gtypeCelToPQ	Function to immitate Affymetrix' gtype_cel_to_pq software
gtypeCelToPQ.default	Function to immitate Affymetrix' gtype_cel_to_pq software
readApd	Reads an Affymetrix probe data (APD) file
readApd.default	Reads an Affymetrix probe data (APD) file
readApdHeader	Reads the header of an Affymetrix probe data (APD) file
readApdHeader.default	Reads the header of an Affymetrix probe data (APD) file
readApdMap	Reads an APD probe map file
readApdMap.default	Reads an APD probe map file
readApdRectangle	Reads a spatial subset of probe-level data from Affymetrix APD files
readApdRectangle.default	Reads a spatial subset of probe-level data from Affymetrix APD files
readApdUnits	Reads Affymetrix probe data (APD) as units (probesets)
readApdUnits.default	Reads Affymetrix probe data (APD) as units (probesets)
updateApd	Updates an Affymetrix probe data (APD) file
updateApd.default	Updates an Affymetrix probe data (APD) file
updateApdHeader	Updates the header of an Affymetrix probe data (APD) file
updateApdHeader.default	Updates the header of an Affymetrix probe data (APD) file
updateApdUnits	Updates an Affymetrix probe data (APD) file by units (probesets)
updateApdUnits.default	Updates an Affymetrix probe data (APD) file by units (probesets)
writeApd	Writes an APD probe data file
writeApd.default	Writes an APD probe data file
writeApdMap	Writes an APD probe map file
writeApdMap.default	Writes an APD probe map file