A Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated]


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Documentation for package ‘aroma.apd’ version 0.6.0

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aroma.apd-package Package aroma.apd
aroma.apd Package aroma.apd
cdfToApdMap Generates an APD read map file from an Affymetrix CDF file
cdfToApdMap.default Generates an APD read map file from an Affymetrix CDF file
celToApd Generates an APD file from an Affymetrix CEL file
celToApd.default Generates an APD file from an Affymetrix CEL file
createApd Creates an Affymetrix probe data (APD) file
createApd.default Creates an Affymetrix probe data (APD) file
findApdMap Search for APD map files in multiple directories
findApdMap.default Search for APD map files in multiple directories
gtypeCelToPQ Function to immitate Affymetrix' gtype\_cel\_to\_pq software
gtypeCelToPQ.default Function to immitate Affymetrix' gtype\_cel\_to\_pq software
readApd Reads an Affymetrix probe data (APD) file
readApd.default Reads an Affymetrix probe data (APD) file
readApdHeader Reads the header of an Affymetrix probe data (APD) file
readApdHeader.default Reads the header of an Affymetrix probe data (APD) file
readApdMap Reads an APD probe map file
readApdMap.default Reads an APD probe map file
readApdRectangle Reads a spatial subset of probe-level data from Affymetrix APD files
readApdRectangle.default Reads a spatial subset of probe-level data from Affymetrix APD files
readApdUnits Reads Affymetrix probe data (APD) as units (probesets)
readApdUnits.default Reads Affymetrix probe data (APD) as units (probesets)
updateApd Updates an Affymetrix probe data (APD) file
updateApd.default Updates an Affymetrix probe data (APD) file
updateApdHeader Updates the header of an Affymetrix probe data (APD) file
updateApdHeader.default Updates the header of an Affymetrix probe data (APD) file
updateApdUnits Updates an Affymetrix probe data (APD) file by units (probesets)
updateApdUnits.default Updates an Affymetrix probe data (APD) file by units (probesets)
writeApd Writes an APD probe data file
writeApd.default Writes an APD probe data file
writeApdMap Writes an APD probe map file
writeApdMap.default Writes an APD probe map file