MEGENA-package |
co-expression network analysis |
calculate.correlation |
correlation calculation |
calculate.PFN |
PFN calculation |
compute.PFN.par |
Parallelized PFN computation |
datExpr |
Toy example data |
do.MEGENA |
MEGENA clustering + MHA |
draw_sunburst_wt_fill |
Draw sunburst plot showing MEGENA module hierarchy. |
get.DegreeHubStatistic |
calculate module degree statistics based on random triangulation model via T1 and T2 moves. |
get.hub.summary |
summarize hub information. |
get.union.cut |
Scale-thresholding of multiscale modules. |
MEGENA |
co-expression network analysis |
MEGENA.ModuleSummary |
MEGENA module summary |
module_convert_to_table |
conversion of module list object to a data.frame table format |
output.geneSet.file |
output gene signatures into .gmt file format |
planaritytest |
Boyer-Myvold Planarity test of a network |
plot_module |
Module plotting function. |
plot_module_hierarchy |
Plot module hierarchy |
plot_subgraph |
subnetwork plotting functionality. |
read.geneSet |
.gmt file reader function |
Sample_Expression.RData |
Toy example data |