'TRFLP' Analysis and Matching Package for R
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Documentation for package ‘TRAMPR’ version 1.0-10
Help Pages
| TRAMPR-package | The TRAMPR Package (TRFLP Analysis and Matching Package for R) |
| add.known | Add Knowns To TRAMPknowns Databases |
| add.known.TRAMP | Add Knowns To TRAMPknowns Databases |
| add.known.TRAMPknowns | Add Knowns To TRAMPknowns Databases |
| build.knowns | Automatically Build Knowns Database |
| combine | Combine Two Objects |
| combine.TRAMP | Add Knowns To TRAMPknowns Databases |
| combine.TRAMPknowns | Add Knowns To TRAMPknowns Databases |
| combine.TRAMPsamples | Combine TRAMPsamples Objects |
| create.diffsmatrix | Calculate Matrix of Distances between Peaks |
| demo.knowns | Demonstration Knowns Database |
| demo.samples | Demonstration Samples Database |
| group.knowns | Knowns Clustering |
| group.knowns.TRAMP | Knowns Clustering |
| group.knowns.TRAMPknowns | Knowns Clustering |
| labels.TRAMPknowns | TRAMPknowns Objects |
| labels.TRAMPsamples | TRAMPsamples Objects |
| load.abi | Load ABI Output Files |
| load.abi.create.info | Load ABI Output Files |
| load.abi.create.template | Load ABI Output Files |
| peakscanner.to.genemapper | Load ABI Output Files |
| plot.TRAMP | Plot a TRAMP Object |
| plot.TRAMPknowns | Summary Plot of Knowns Data |
| plot.TRAMPsamples | Plot a TRAMPsamples Object |
| read.abi | Read ABI Output Files |
| read.TRAMPknowns | Read/Write TRAMPknowns and TRAMPsamples Objects |
| read.TRAMPsamples | Read/Write TRAMPknowns and TRAMPsamples Objects |
| rebuild.TRAMP | Rebuild a TRAMP Object |
| remove.TRAMP.match | Mark a TRAMP Match as Ignored |
| summary.TRAMP | Create Presence/Absence Matrices from TRAMP Objects |
| summary.TRAMPknowns | TRAMPknowns Objects |
| summary.TRAMPsamples | TRAMPsamples Objects |
| TRAMP | TRFLP Analysis and Matching Program |
| TRAMP.plotone | Plot a TRAMP Object |
| TRAMPindexing | Index (Subset) TRAMPsamples and TRAMPknowns Objects |
| TRAMPknowns | TRAMPknowns Objects |
| TRAMPR | The TRAMPR Package (TRFLP Analysis and Matching Package for R) |
| TRAMPsamples | TRAMPsamples Objects |
| TRAMPsamples.plotone | Plot a TRAMPsamples Object |
| update.TRAMP | Interactively Alter a TRAMP Object |
| write.TRAMPknowns | Read/Write TRAMPknowns and TRAMPsamples Objects |
| write.TRAMPsamples | Read/Write TRAMPknowns and TRAMPsamples Objects |
| [.TRAMPknowns | Index (Subset) TRAMPsamples and TRAMPknowns Objects |
| [.TRAMPsamples | Index (Subset) TRAMPsamples and TRAMPknowns Objects |