Data Wrangling for Antimicrobial Resistance Studies
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Documentation for package ‘MIMER’ version 1.0.3
Help Pages
| add_events | Add a column and check any previous events identified for a particular antibiotic |
| check_previous_events | Add a column and check any previous events identified for a particular antibiotic |
| cleanse_urine_organism_names | Cleanse organism names in Urine samples |
| clean_antibiotics | Clean Antibiotics using Fuzzy Matching with AMR Packages's Antibiotics Data. |
| convert_all_directory_files_as_csv | Convert All Directory Files to CSV - To be used in the Manual Build Process |
| download_ndc_files_as_csv | Download and Convert NDC Files to CSV - To be used in the Manual Build Process |
| duplicated_microbioevents_records | Transpose microbiology events dataset |
| is_systemic_route | Check 'route' is systemic or not |
| ndc_is_antimicrobial | Check 'ndc' code is belongs to any Antimicrobial. |
| ndc_to_antimicrobial | Convert 'ndc' code to corresponding Antibiotic code. |
| remove_files | Remove Files - To be used in the Manual Build Process |
| transpose_microbioevents | Transpose microbiology events dataset |