jagshelper-package |
Functions for Extracting and Visualizing Output from 'jagsUI' |
asdf_jags_out |
Example data: asdf jags out |
asdf_prior_jags_out |
Example data: asdf prior jags out |
caterpillar |
Caterpillar plot |
chaindens_df |
By-chain kernel density of each column of a 'data.frame'. |
chaindens_jags |
By-chain kernel densities of 'jagsUI' object |
chaindens_line |
Simple by-chain kernel density plot |
check_neff |
Quick summary of n.eff values by parameter name |
check_Rhat |
Quick summary of Rhat values by parameter name |
comparecat |
Compare Caterpillar Plots |
comparedens |
Compare Density |
comparepriors |
Compare Priors |
cor_jags |
Correlation matrix from a JAGS object |
crossplot |
Bivariate Plot of Posterior Densities |
envelope |
Envelope plot |
expit |
Expit, or inverse logit |
jagshelper |
Functions for Extracting and Visualizing Output from 'jagsUI' |
jags_df |
Extract data.frame |
jags_plist |
Plist |
logit |
Logit |
nbyname |
Number of parameter nodes by parameter name |
nparam |
Number of parameters |
overlayenvelope |
Overlay envelope plots |
pairstrace_jags |
Pairs trace plot |
plotcor_jags |
Plot a correlation matrix from a JAGS object |
plotdens |
Plot kernel densities of single parameter nodes |
plotRhats |
Plotting all Rhat values |
plot_postpred |
Diagnostic plots from posterior predictive distribution |
pull_post |
Subset from posterior data.frame |
qq_postpred |
Quantile-quantile plot from posterior predictive distribution |
rcolors |
Random Colors |
skeleton |
Skeleton |
SS_data |
Example data: Time series associated with SS JAGS out |
SS_out |
Example data: SS JAGS out |
tracedens_jags |
Combination of trace plots and by-chain kernel densities of 'jagsUI' object |
traceworstRhat |
Trace plots corresponding to the worst values of Rhat |
trace_df |
Trace plot of each column of a 'data.frame'. |
trace_jags |
Trace plot of jagsUI object |
trace_line |
Simple trace plot |
ts_postpred |
Time series plot of centered posterior predictive distribution |