Extracting and Visualizing Output from 'jagsUI'

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Documentation for package ‘jagshelper’ version 0.2.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

jagshelper-package	Functions for Extracting and Visualizing Output from 'jagsUI'
asdf_jags_out	Example data: asdf jags out
asdf_prior_jags_out	Example data: asdf prior jags out
caterpillar	Caterpillar plot
chaindens_df	By-chain kernel density of each column of a 'data.frame'.
chaindens_jags	By-chain kernel densities of 'jagsUI' object
chaindens_line	Simple by-chain kernel density plot
check_neff	Quick summary of n.eff values by parameter name
check_Rhat	Quick summary of Rhat values by parameter name
comparecat	Compare Caterpillar Plots
comparedens	Compare Density
comparepriors	Compare Priors
cor_jags	Correlation matrix from a JAGS object
envelope	Envelope plot
expit	Expit, or inverse logit
jagshelper	Functions for Extracting and Visualizing Output from 'jagsUI'
jags_df	Extract data.frame
jags_plist	Plist
logit	Logit
nbyname	Number of parameter nodes by parameter name
nparam	Number of parameters
overlayenvelope	Overlay envelope plots
pairstrace_jags	Pairs trace plot
plotcor_jags	Plot a correlation matrix from a JAGS object
plotdens	Plot kernel densities of single parameter nodes
plotRhats	Plotting all Rhat values
pull_post	Subset from posterior data.frame
qq_postpred	Quantile-quantile plot from posterior predictive distribution
rcolors	Random Colors
skeleton	Skeleton
SS_data	Example data: Time series associated with SS JAGS out
SS_out	Example data: SS JAGS out
tracedens_jags	Combination of trace plots and by-chain kernel densities of 'jagsUI' object
traceworstRhat	Trace plots corresponding to the worst values of Rhat
trace_df	Trace plot of each column of a 'data.frame'.
trace_jags	Trace plot of jagsUI object
trace_line	Simple trace plot
ts_postpred	Time series plot of centered posterior predictive distribution