Estimates Allele Frequency on qPCR DeltaDeltaCq from Bulk Samples

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Documentation for package ‘freqpcr’ version 0.4.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

.freqpcr_loglike	Log-likelihood of obtaining Cq values under given parameter set.
.freqpcr_loglike_cont	Log-likelihood when sample allele ratio is continuous.
CqFreq	Output object of 'freqpcr()'.
CqFreq-class	Output object of 'freqpcr()'.
CqList	S4 class storing the dummy Cq data for performance test.
CqList-class	S4 class storing the dummy Cq data for performance test.
freqpcr	Estimate population allele frequency from the set of Cq measurements.
knownqpcr	Estimate auxiliary parameters using samples with known allele ratios.
knownqpcr_unpaired	Estimate auxiliary parameters when the sample pairs are incomplete.
make_dummy	Generate dummy DNA dataset ready for allele-frequency estimation.
sim_dummy	Simulate freqpcr estimation based on user-generated dummy data.