Generating Robust Biclusters from a Bicluster Set (Ensemble Biclustering)

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Documentation for package ‘superbiclust’ version 1.2

• DESCRIPTION file.

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superbiclust-package	generating robust biclusters form the set of biclusters
BiclustSet	Class 'BiclustSet'
BiclustSet-class	Class 'BiclustSet'
BiclustSet-method	Constructor of BiclustSet object
BiclustSet-methods	Constructor of BiclustSet object
combine	Combine two Biclust objects into one
getStats	Get frequency statistic for the columns and rows membership
HCLtree	Hierarchical structure of bicluster output
jaccardMat	Jaccard similarity Matrix for bicluster output
kulczynskiMat	Kulczynski similarity Matrix for bicluster output
ochiaiMat	Ochiai similarity Matrix for bicluster output
plotProfilesAcrossAllSamples	Plot Gene Expression Profiles Across All Samples of the Original Data
plotProfilesWithinBicluster	Plot Gene Expression Profiles within a (Core) Bicluster
plotSuper	Plot gene profiles within biclusters
plotSuperAll	Plot gene profiles for all samples in the data
sensitivityMat	Sensitivity Matrix for bicluster output
show-method	Class 'BiclustSet'
similarity	Similarity Matrix for bicluster output
sorensenMat	Sorensen similarity Matrix for bicluster output
specificityMat	Specificity Matrix for bicluster output
summary-method	Class 'BiclustSet'
superbiclust	generating robust biclusters form the set of biclusters