Relative Simulator

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Documentation for package ‘relSim’ version 1.0.0

• DESCRIPTION file.
• Package NEWS.

Help Pages

allPairsLR	Compute the likehood ratio for all pairs of profiles in a database
blockSim	Perform relatives simulations using large memory blocks in C
breedFst	Breed a population with an approximate level of theta(Fst)
calcFst	Caculate locus-wise and population Fst values
calcFStats	Calculate locus-wise and population theta = F_ST, F = F_IT, and f = F_IS values
checkFreqs	Make sure that the frequencies are such
ep	Calculate the exclusion power of a multiplex by locus
errorRate	Returns the false positive or false negative rates for a set of IBS and/or KI thresholds
exclusionPower	Calculate the exclusion power of a multiplex by locus
famSearch	Search a database for siblings or children
fbiCaucs	CODIS STR Loci allele frequency data
fetchBMdata	Retrieve data from Budowle and Moretti (1999) from the web
IBS	Identity by state
IS	Use importance sampling to determine the probability of m peaks from n contributors to a mixture
locusIBS	Identity by state at a locus
lrMix	Calculate locuswise likelihood ratios for two person victim/suspect mixtures
lrPC	Likelihood Ratio for Parent-Child / Paternity Index
lrSib	Likelihood Ratio / Kinship Index for full-siblings
lrSibDebug	Likelihood Ratio / Kinship Index for full-siblings
normalizeFreqs	Normalize frequencies to 1
print.population	Print summary details of a substructed population
print.profile	Print a DNA profile
randomChild	Generate a random child from a given DNA profile and a given set of allele frequencies
randomPCPairs	Generate one or more random parent/child pairs from a given set of allele frequencies
randomProfile	Generate a random DNA profile from a given set of allele frequencies
randomProfilePairs	Generate one or more random DNA profile pairs from a given set of allele frequencies
randomSample	Generate a random sample of related (or unrelated) pairs of people
randomSib	Generate a random sibling from a given DNA profile and a given set of allele frequencies
randomSibPairs	Generate one or more pairs of random siblings from a given set of allele frequencies
readFreqs	Read in a file of allele frequencies
readProfiles	Read a set of profiles from a file
readResults	Read a simulation result set from file
sim	Perform the relatives simulation
simNpersonMixture	Simulate and count unique alleles in N person mixtures
toNexus	Export a population with substructure to a Nexus file
USCaucs	CODIS STR Loci allele frequency data
writeCSV	Saves/writes population frequencies to disk
writePop	Saves/writes population profiles to disk