Statistical Modeling of Animal Movements

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Documentation for package ‘smam’ version 0.7.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

smam-package	smam: Statistical Modeling of Animal Movements
approxNormalOrder	Auxiliary for Preparing Discrete Distribution used to approximating Standard Normal Distribution
approxNormalOrder2	Auxiliary for Preparing Discrete Distribution used to approximating Standard Normal Distribution
dtm	Density for Time Spent in Moving or Resting
dtr	Density for Time Spent in Moving or Resting
estimate	Estimate Result of smam Estimators
estimate.smam_bmme	Estimate Result of smam Estimators
estimate.smam_mm	Estimate Result of smam Estimators
estimate.smam_mr	Estimate Result of smam Estimators
estimate.smam_mrh	Estimate Result of smam Estimators
estimate.smam_mrme	Estimate Result of smam Estimators
estVarMM	Fit a Moving-Moving Model with 2 Embedded Brownian Motion
estVarMRMEnaive_Godambe	Variance matrix of estimators from moving-resting process with measurement error
estVarMRMEnaive_pBootstrap	Variance matrix of estimators from moving-resting process with measurement error
estVarMRME_Godambe	Variance matrix of estimators from moving-resting process with measurement error
estVarMRME_pBootstrap	Variance matrix of estimators from moving-resting process with measurement error
f109	GPS data of f109
f109raw	GPS data of f109 (raw format)
fitBMME	Fit a Brownian Motion with Measurement Error
fitBmme	Fit a Brownian Motion with Measurement Error
fitMM	Fit a Moving-Moving Model with 2 Embedded Brownian Motion
fitMovRes	Fit a Moving-Resting Model with Embedded Brownian Motion
fitMR	Fit a Moving-Resting Model with Embedded Brownian Motion
fitMRH	Fit a Moving-Resting-Handling Model with Embedded Brownian Motion
fitMRME	Fit a Moving-Resting Model with Measurement Error
fitMRMEapprox	Fit a Moving-Resting Model with Measurement Error
fitMRME_naive	Fit a Moving-Resting Model with Measurement Error
fitPartialViterbiMR	Estimation of states at each time point with Moving-Resting Process
fitPartialViterbiMRH	Estimation of states at each time point with Moving-Resting-Handling Process
fitStateMR	Estimation of states at each time point with Moving-Resting Process
fitStateMRH	Estimation of states at each time point with Moving-Resting-Handling Process
fitViterbiMR	Estimation of states at each time point with Moving-Resting Process
fitViterbiMRH	Estimation of states at each time point with Moving-Resting-Handling Process
integr.control	Auxiliary for Controlling Numerical Integration
rBB	Sampling from a Brownian bridge path give a grid time
rBMME	Sampling from Brown Motion with Measurement Error
rBmme	Sampling from Brown Motion with Measurement Error
rMM	Sampling from a Moving-Moving Process with 2 Embedded Brownian Motion
rMovRes	Sampling from a Moving-Resting Process with Embedded Brownian Motion
rMR	Sampling from a Moving-Resting Process with Embedded Brownian Motion
rMRB	Sampling from a Moving-Resting bridge
rMRH	Sampling from a Moving-Resting-Handling Process with Embedded Brownian Motion
rMRME	Sampling from a Moving-Resting Process with Embedded Brownian Motion
seasonFilter	Subsetting data during given season for each year (seasonal analysis toolbox)
smam	smam: Statistical Modeling of Animal Movements
transfData	Transfer raw dataset to the standard dataset (seasonal analysis toolbox)
vcov	Variance-Covariance Matrix of smam Estimators
vcov.smam_bmme	Variance-Covariance Matrix of smam Estimators
vcov.smam_mm	Variance-Covariance Matrix of smam Estimators
vcov.smam_mr	Variance-Covariance Matrix of smam Estimators
vcov.smam_mrh	Variance-Covariance Matrix of smam Estimators
vcov.smam_mrme	Variance-Covariance Matrix of smam Estimators