Helper Functions for Second Primary Cancer Analyses

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Documentation for package ‘msSPChelpR’ version 0.9.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

asir	Calculate age-standardized incidence rates
calc_futime	Calculate follow-up time per case until end of follow-up depending on pat_status - tidyverse version
calc_futime_tt	Calculate follow-up time per case until end of follow-up depending on pat_status - tidytable version
calc_refrates	Calculate age-, sex-, cohort-, region-specific incidence rates from a cohort
histgroup_iarc	Create variable for groups of malignant neoplasms considered to be histologically 'different' for the purpose of defining multiple tumors, ICD-O-3
ir_crosstab	Calculate crude incidence rates and crosstabulate results by break variables
ir_crosstab_byfutime	Calculate crude incidence rates and cross-tabulate results by break variables; cumulative FU-times as are used as xbreak_var
pat_status	Determine patient status at specific end of follow-up - tidyverse version
pat_status_tt	Determine patient status at specific end of follow-up - tidytable version
population_us	US Populations Data
renumber_time_id	Renumber the time ID per case (i.e. Tumor sequence)
renumber_time_id_tt	Renumber the time ID per case (i.e. Tumor sequence) - tidytable version
reshape_long	Reshape dataset to long format - stats::reshape version
reshape_long_tidyr	Reshape dataset to wide format - tidyr version
reshape_long_tt	Reshape dataset to wide format - tidytable version
reshape_wide	Reshape dataset to wide format
reshape_wide_tidyr	Reshape dataset to wide format - tidyr version
reshape_wide_tt	Reshape dataset to wide format - tidytable version
sir_byfutime	Calculate standardized incidence ratios with custom grouping variables stratified by follow-up time
sir_ratio	Calculate Ratio of two SIRs or SMRs
sir_ratio_lci	Calculate Ratio of two SIRs or SMRs
sir_ratio_uci	Calculate Ratio of two SIRs or SMRs
standard_population	Standard Populations Data
summarize_sir_results	Summarize detailed SIR results
us_refrates_icd2	US Reference Rates for Cancer Data (ICD-O 2digit code)
us_second_cancer	US Second Cancer Data
vital_status	Determine vital status at end of follow-up depending on pat_status - tidyverse version
vital_status_tt	Determine vital status at end of follow-up depending on pat_status - tidytable version