Localization Microscopy Data Analysis
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Documentation for package ‘LOMAR’ version 0.4.0
Help Pages
| apply_transformation | apply_transformation |
| ary2ps | ary2ps |
| circle_hough_transform | Circle Hough transform |
| costWd | costWd |
| cpd | cpd |
| crop_point_set | crop_point_set |
| denoise | denoise |
| dist_to_boundary | dist_to_boundary |
| dist_to_line | dist_to_line |
| downsample | downsample |
| find_elbow | find_elbow |
| Gaussian_Wd | Gaussian_Wd |
| get_kernel_matrix | get_kernel_matrix |
| get_persistence_diagrams | get_persistence_diagrams |
| get_shape | get_shape |
| get_surface_area | get_surface_area |
| GMM_Wd | GMM_Wd |
| gradientWd | gradientWd |
| group_events | group_events |
| icp | icp |
| idx2rowcol | idx2rowcol |
| img2ps | img2ps |
| jrmpc | jrmpc |
| local_densities | local_densities |
| locprec2cov | locprec2cov |
| locs2ps | locs2ps |
| locs_from_csv | locs_from_csv |
| points2img | points2img |
| points_from_roi | points_from_roi |
| point_sets_from_locs | point_sets_from_locs |
| point_sets_from_tiffs | point_sets_from_tiffs |
| ps2ary | ps2ary |
| pssk | pssk |
| q2dr | Get derivative of 3D rotation matrix from quaternion |
| q2r | Convert quaternion to rotation matrix http://en.wikipedia.org/wiki/Quaternions_and_spatial_rotation |
| restore_coordinates | restore_coordinates |
| rotx | rotx |
| roty | roty |
| rotz | rotz |
| scale_alpha_shape | scale_alpha_shape |
| shape_features_3d | shape_features_3d |
| sliced_Wd | sliced_Wd |
| standardize_coordinates | standardize_coordinates |
| tr | tr |
| wgmmreg | wgmmreg |