Evolutionary Trait Divergence Between Sister Species and Other Paired Lineages


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Documentation for package ‘diverge’ version 2.0.1

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diverge-package Evolutionary Trait Divergence Between Sister Species and Other Paired Lineages
all_birds Example Tree
bootstrap_ci Estimate confidence intervals using bootstrap
diverge Evolutionary Trait Divergence Between Sister Species and Other Paired Lineages
expected_val Expected value through time
extract_sisters Extract sister pairs
find_mle Find Maximum Likelihood Estimates
likelihood_func Functions for negative log likelihood
model_error_rate Calculate error rate in model selection
model_generator Generate parameter~gradient linear models
model_select Select the best fit model of trait divergence
param_grid Generate parameter grid
random_walks Simulate and plot trait evolution through time
re_estimator Estimate model parameters
simulate_div Simulate trait divergence