diverge-package |
Evolutionary Trait Divergence Between Sister Species and Other Paired Lineages |
all_birds |
Example Tree |
bootstrap_ci |
Estimate confidence intervals using bootstrap |
diverge |
Evolutionary Trait Divergence Between Sister Species and Other Paired Lineages |
expected_val |
Expected value through time |
extract_sisters |
Extract sister pairs |
find_mle |
Find Maximum Likelihood Estimates |
likelihood_func |
Functions for negative log likelihood |
model_error_rate |
Calculate error rate in model selection |
model_generator |
Generate parameter~gradient linear models |
model_select |
Select the best fit model of trait divergence |
param_grid |
Generate parameter grid |
random_walks |
Simulate and plot trait evolution through time |
re_estimator |
Estimate model parameters |
simulate_div |
Simulate trait divergence |