Removal of Unwanted Technical Variation from UK Biobank NMR
Metabolomics Biomarker Data
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Documentation for package ‘ukbnmr’ version 2.2
Help Pages
| ukbnmr-package | Tools for processing the UK Biobank NMR metabolomics biomarker data |
| compute_extended_ratios | Compute extended set of biomarker ratios |
| compute_extended_ratio_qc_flags | Aggregate QC Flags when computing the extended set of biomarker ratios |
| compute_nightingale_ratios | Compute 81 biomarker ratios on the Nightingale platform |
| compute_nightingale_ratio_qc_flags | Aggregate QC Flags when computing Nightingale's 81 biomarker ratios |
| extract_biomarkers | Extract NMR metabolomic biomarkers from a data.frame of UK Biobank fields |
| extract_biomarker_qc_flags | Extract NMR biomarker QC flags from a data.frame of UK Biobank fields |
| extract_sample_qc_flags | Extract NMR sample QC flags from a data.frame of UK Biobank fields |
| nmr_info | Nightingale biomarker information |
| recompute_derived_biomarkers | Recompute composite biomarkers and ratios from the 107 non-derived biomarkers |
| recompute_derived_biomarker_qc_flags | Aggregate QC Flags when recomputing all composite and derived biomarkers |
| remove_technical_variation | Remove technical variation from NMR biomarker data in UK Biobank. |
| sample_qc_info | Nightingale biomarker sample processing information |
| test_data | Data for testing package functions |
| ukbnmr | Tools for processing the UK Biobank NMR metabolomics biomarker data |