Comprehensive Luminescence Dating Data Analysis

Documentation for package ‘Luminescence’ version 0.9.24

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Comprehensive Luminescence Dating Data Analysis

-- A --

analyse_Al2O3C_CrossTalk	Al2O3:C Reader Cross Talk Analysis
analyse_Al2O3C_ITC	Al2O3 Irradiation Time Correction Analysis
analyse_Al2O3C_Measurement	Al2O3:C Passive Dosimeter Measurement Analysis
analyse_baSAR	Bayesian models (baSAR) applied on luminescence data
analyse_FadingMeasurement	Analyse fading measurements and returns the fading rate per decade (g-value)
analyse_IRSAR.RF	Analyse IRSAR RF measurements
analyse_pIRIRSequence	Analyse post-IR IRSL measurement sequences
analyse_portableOSL	Analyse portable CW-OSL measurements
analyse_SAR.CWOSL	Analyse SAR CW-OSL measurements
Analyse_SAR.OSLdata	Analyse SAR CW-OSL measurements.
analyse_SAR.TL	Analyse SAR TL measurements
apply_CosmicRayRemoval	Function to remove cosmic rays from an RLum.Data.Spectrum S4 class object
apply_EfficiencyCorrection	Function to apply spectral efficiency correction to RLum.Data.Spectrum S4 class objects
as	as() - RLum-object coercion

-- B --

BaseDataSet.ConversionFactors	Base data set of dose-rate conversion factors
BaseDataSet.CosmicDoseRate	Base data set for cosmic dose rate calculation
BaseDataSet.FractionalGammaDose	Base data set of fractional gamma-dose values
BaseDataSet.GrainSizeAttenuation	Base dataset for grain size attenuation data by Guérin et al. (2012)
bin_RLum.Data	Channel binning - method dispatcher

-- C --

calc_AliquotSize	Estimate the amount of grains on an aliquot
calc_AverageDose	Calculate the Average Dose and the dose rate dispersion
calc_CentralDose	Apply the central age model (CAM) after Galbraith et al. (1999) to a given De distribution
calc_CobbleDoseRate	Calculate dose rate of slices in a spherical cobble
calc_CommonDose	Apply the (un-)logged common age model after Galbraith et al. (1999) to a given De distribution
calc_CosmicDoseRate	Calculate the cosmic dose rate
calc_FadingCorr	Fading Correction after Huntley & Lamothe (2001)
calc_FastRatio	Calculate the Fast Ratio for CW-OSL curves
calc_FiniteMixture	Apply the finite mixture model (FMM) after Galbraith (2005) to a given De distribution
calc_FuchsLang2001	Apply the model after Fuchs & Lang (2001) to a given De distribution.
calc_gSGC	Calculate De value based on the gSGC by Li et al., 2015
calc_gSGC_feldspar	Calculate Global Standardised Growth Curve (gSGC) for Feldspar MET-pIRIR
calc_HomogeneityTest	Apply a simple homogeneity test after Galbraith (2003)
calc_Huntley2006	Apply the Huntley (2006) model
calc_IEU	Apply the internal-external-uncertainty (IEU) model after Thomsen et al. (2007) to a given De distribution
calc_Kars2008	Apply the Kars et al. (2008) model (deprecated)
calc_Lamothe2003	Apply fading correction after Lamothe et al., 2003
calc_MaxDose	Apply the maximum age model to a given De distribution
calc_MinDose	Apply the (un-)logged minimum age model (MAM) after Galbraith et al. (1999) to a given De distribution
calc_OSLLxTxDecomposed	Calculate Lx/Tx ratio for decomposed CW-OSL signal components
calc_OSLLxTxRatio	Calculate 'Lx/Tx' ratio for CW-OSL curves
calc_SourceDoseRate	Calculation of the source dose rate via the date of measurement
calc_Statistics	Function to calculate statistic measures
calc_ThermalLifetime	Calculates the Thermal Lifetime using the Arrhenius equation
calc_TLLxTxRatio	Calculate the Lx/Tx ratio for a given set of TL curves -beta version-
calc_WodaFuchs2008	Obtain the equivalent dose using the approach by Woda and Fuchs 2008
combine_De_Dr	Combine Dose Rate and Equivalent Dose Distribution
convert_Activity2Concentration	Convert Nuclide Activities to Abundance and Vice Versa
convert_BIN2CSV	Export Risoe BIN-file(s) to CSV-files
convert_Concentration2DoseRate	Dose-rate conversion function
convert_Daybreak2CSV	Export measurement data produced by a Daybreak luminescence reader to CSV-files
convert_PSL2CSV	Export PSL-file(s) to CSV-files
convert_RLum2Risoe.BINfileData	Converts RLum.Analysis-objects and RLum.Data.Curve-objects to RLum2Risoe.BINfileData-objects
convert_SG2MG	Converts Single-Grain Data to Multiple-Grain Data
convert_Wavelength2Energy	Emission Spectra Conversion from Wavelength to Energy Scales (Jacobian Conversion)
convert_XSYG2CSV	Export XSYG-file(s) to CSV-files
CW2pHMi	Transform a CW-OSL curve into a pHM-OSL curve via interpolation under hyperbolic modulation conditions
CW2pLM	Transform a CW-OSL curve into a pLM-OSL curve
CW2pLMi	Transform a CW-OSL curve into a pLM-OSL curve via interpolation under linear modulation conditions
CW2pPMi	Transform a CW-OSL curve into a pPM-OSL curve via interpolation under parabolic modulation conditions
CWOSL.SAR.Data	Example data from a SAR OSL and SAR TL measurement for the package Luminescence
CW_Curve.BosWallinga2012	Example CW-OSL curve data for the package Luminescence

-- D --

data_CrossTalk	Example Al2O3:C Measurement Data
data_ITC	Example Al2O3:C Measurement Data

-- E --

ExampleData.Al2O3C	Example Al2O3:C Measurement Data
ExampleData.BINfileData	Example data from a SAR OSL and SAR TL measurement for the package Luminescence
ExampleData.CobbleData	Example data for calc_CobbleDoseRate()
ExampleData.CW_OSL_Curve	Example CW-OSL curve data for the package Luminescence
ExampleData.DeValues	Example De data sets for the package Luminescence
ExampleData.Fading	Example data for feldspar fading measurements
ExampleData.FittingLM	Example data for fit_LMCurve() in the package Luminescence
ExampleData.LxTxData	Example Lx/Tx data from CW-OSL SAR measurement
ExampleData.LxTxOSLData	Example Lx and Tx curve data from an artificial OSL measurement
ExampleData.portableOSL	Example portable OSL curve data for the package Luminescence
ExampleData.RLum.Analysis	Example data as RLum.Analysis objects
ExampleData.RLum.Data.Image	Example data as RLum.Data.Image objects
ExampleData.ScaleGammaDose	Example data for scale_GammaDose()
ExampleData.SurfaceExposure	Example OSL surface exposure dating data
ExampleData.TR_OSL	Example TR-OSL data
ExampleData.XSYG	Example data for a SAR OSL measurement and a TL spectrum using a lexsyg reader
extdata	Collection of External Data
extract_IrradiationTimes	Extract Irradiation Times from an XSYG-file
extract_ROI	Extract Pixel Values through Circular Region-of-Interests (ROI) from an Image

-- F --

fit_CWCurve	Nonlinear Least Squares Fit for CW-OSL curves -beta version-
fit_EmissionSpectra	Luminescence Emission Spectra Deconvolution
fit_LMCurve	Nonlinear Least Squares Fit for LM-OSL curves
fit_OSLLifeTimes	Fitting and Deconvolution of OSL Lifetime Components
fit_SurfaceExposure	Nonlinear Least Squares Fit for OSL surface exposure data
fit_ThermalQuenching	Fitting Thermal Quenching Data

-- G --

get_Layout	Collection of layout definitions
get_Quote	Function to return essential quotes
get_rightAnswer	Function to get the right answer
get_Risoe.BINfileData	General accessor function for RLum S4 class objects
get_RLum	General accessors function for RLum S4 class objects
get_RLum-method	General accessors function for RLum S4 class objects
GitHub-API	GitHub API
github_branches	GitHub API
github_commits	GitHub API
github_issues	GitHub API

-- I --

import_Data	Import Luminescence Data into R
install_DevelopmentVersion	Attempts to install the development version of the 'Luminescence' package
IRSAR.RF.Data	Example data as RLum.Analysis objects

-- L --

length_RLum	General accessor function for RLum S4 class objects
Luminescence	Comprehensive Luminescence Dating Data Analysis
Lx.data	Example Lx and Tx curve data from an artificial OSL measurement
LxTxData	Example Lx/Tx data from CW-OSL SAR measurement

-- M --

merge_Risoe.BINfileData	Merge Risoe.BINfileData objects or Risoe BIN-files
merge_RLum	General merge function for RLum S4 class objects

-- N --

names_RLum	S4-names function for RLum S4 class objects
names_RLum-method	S4-names function for RLum S4 class objects

-- O --

OSL.SARMeasurement

Example data for a SAR OSL measurement and a TL spectrum using a lexsyg reader

-- P --

plot_AbanicoPlot	Function to create an Abanico Plot.
plot_DetPlot	Create De(t) plot
plot_DRCSummary	Create a Dose-Response Curve Summary Plot
plot_DRTResults	Visualise dose recovery test results
plot_FilterCombinations	Plot filter combinations along with the (optional) net transmission window
plot_GrowthCurve	Fit and plot a dose-response curve for luminescence data (Lx/Tx against dose)
plot_Histogram	Plot a histogram with separate error plot
plot_KDE	Plot kernel density estimate with statistics
plot_NRt	Visualise natural/regenerated signal ratios
plot_OSLAgeSummary	Plot Posterior OSL-Age Summary
plot_RadialPlot	Function to create a Radial Plot
plot_Risoe.BINfileData	Plot single luminescence curves from a BIN file object
plot_RLum	General plot function for RLum S4 class objects
plot_RLum.Analysis	Plot function for an RLum.Analysis S4 class object
plot_RLum.Data.Curve	Plot function for an RLum.Data.Curve S4 class object
plot_RLum.Data.Image	Plot function for an 'RLum.Data.Image' S4 class object
plot_RLum.Data.Spectrum	Plot function for an RLum.Data.Spectrum S4 class object
plot_RLum.Results	Plot function for an RLum.Results S4 class object
plot_ROI	Create Regions of Interest (ROI) Graphic
plot_ViolinPlot	Create a violin plot
PSL2Risoe.BINfileData	Convert portable OSL data to an Risoe.BINfileData object

-- R --

read_BIN2R	Import Risø BIN/BINX-files into R
read_Daybreak2R	Import measurement data produced by a Daybreak TL/OSL reader into R
read_PSL2R	Import PSL files to R
read_RF2R	Import RF-files to R
read_SPE2R	Import Princeton Instruments (TM) SPE-file into R
read_TIFF2R	Import TIFF Image Data into R
read_XSYG2R	Import XSYG files to R
replicate_RLum	General replication function for RLum S4 class objects
replicate_RLum-method	Class '"RLum"'
report_RLum	Create a HTML-report for (RLum) objects
Risoe.BINfileData2RLum.Analysis	Convert Risoe.BINfileData object to an RLum.Analysis object
RLum-class	Class '"RLum"'

-- S --

scale_GammaDose	Calculate the gamma dose deposited within a sample taking layer-to-layer variations in radioactivity into account (according to Aitken, 1985)
Second2Gray	Converting equivalent dose values from seconds (s) to Gray (Gy)
set_Risoe.BINfileData	General accessor function for RLum S4 class objects
set_RLum	General set function for RLum S4 class objects
smooth_RLum	Smoothing of data
smooth_RLum-method	Smoothing of data
sTeve	sTeve - sophisticated tool for efficient data validation and evaluation
structure_RLum	General structure function for RLum S4 class objects
structure_RLum-method	General structure function for RLum S4 class objects
subset_SingleGrainData	Simple Subsetting of Single Grain Data from Risø BIN/BINX files

-- T --

template_DRAC	Create a DRAC input data template (v1.2)
TL.SAR.Data	Example data from a SAR OSL and SAR TL measurement for the package Luminescence
TL.Spectrum	Example data for a SAR OSL measurement and a TL spectrum using a lexsyg reader
trim_RLum.Data	Trim Channels of RLum.Data-class Objects
tune_Data	Tune data for experimental purpose
Tx.data	Example Lx and Tx curve data from an artificial OSL measurement

-- U --

use_DRAC

Use DRAC to calculate dose rate data

-- V --

values.cosmic.Softcomp	Base data set for cosmic dose rate calculation
values.curve	Example data for fit_LMCurve() in the package Luminescence
values.curveBG	Example data for fit_LMCurve() in the package Luminescence
values.factor.Altitude	Base data set for cosmic dose rate calculation
values.par.FJH	Base data set for cosmic dose rate calculation
verify_SingleGrainData	Verify single grain data sets and check for invalid grains, i.e. zero-light level grains

-- W --

write_R2BIN	Export Risoe.BINfileData into Risø BIN/BINX-file
write_R2TIFF	Export RLum.Data.Image and RLum.Data.Spectrum objects to TIFF Images
write_RLum2CSV	Export RLum-objects to CSV