Spatial Bayesian Methods for Task Functional MRI Studies

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Documentation for package ‘BayesfMRI’ version 0.3.11

• DESCRIPTION file.
• Package NEWS.

Help Pages

.findTheta	Perform the EM algorithm of the Bayesian GLM fitting
.getSqrtInvCpp	Get the prewhitening matrix for a single data location
.initialKP	Find the initial values of kappa2 and phi
.logDetQt	Find the log of the determinant of Q_tilde
act_prevalance	Activations prevalence.
aic_Param	aic
ar_order_Param	ar_order
ar_smooth_Param	ar_smooth
BayesGLM	BayesGLM
BayesGLM2	Group-level Bayesian GLM
BayesGLM_cifti	BayesGLM for CIFTI
BayesGLM_group	Group-level Bayesian GLM
Bayes_Param	Bayes
cderiv	Central derivative
combine_sessions_Param	combine_sessions
contrasts_Param	contrasts
emTol_Param	emTol
EM_Param	EM
faces_Param	faces
HRF	Canonical (double-gamma) HRF
id_activations	Identify task activations
INLA_Description	INLA
is.BfMRI.sess	Validate a '"BfMRI.sess"' object.
make_HRFs	Make HRFs
make_mask	Mask out invalid data
make_mesh	Make Mesh
mask_Param_vertices	mask: vertices
max.threads_Param	max.threads
mesh_Param_either	mesh: either
mesh_Param_inla	mesh: INLA only
num.threads_Param	num.threads
plot.act_BayesGLM_cifti	S3 method: use 'view_xifti_surface' to plot a '"act_BayesGLM_cifti"' object
plot.BayesGLM2_cifti	S3 method: use 'view_xifti_surface' to plot a '"BayesGLM2_cifti"' object
plot.BayesGLM_cifti	S3 method: use 'view_xifti_surface' to plot a '"BayesGLM_cifti"' object
plot.prev_BayesGLM_cifti	S3 method: use 'view_xifti' to plot a '"prev_BayesGLM_cifti"' object
print.act_BayesGLM	Summarize a '"act_BayesGLM"' object
print.act_BayesGLM_cifti	Summarize a '"act_BayesGLM_cifti"' object
print.BayesGLM	Summarize a '"BayesGLM"' object
print.BayesGLM2	Summarize a '"BayesGLM2"' object
print.BayesGLM2_cifti	Summarize a '"BayesGLM2_cifti"' object
print.BayesGLM_cifti	Summarize a '"BayesGLM_cifti"' object
print.prev_BayesGLM	Summarize a '"prev_BayesGLM"' object
print.prev_BayesGLM_cifti	Summarize a '"prev_BayesGLM_cifti"' object
print.summary.act_BayesGLM	Summarize a '"act_BayesGLM"' object
print.summary.act_BayesGLM_cifti	Summarize a '"act_BayesGLM_cifti"' object
print.summary.BayesGLM	Summarize a '"BayesGLM"' object
print.summary.BayesGLM2	Summarize a '"BayesGLM2"' object
print.summary.BayesGLM2_cifti	Summarize a '"BayesGLM2_cifti"' object
print.summary.BayesGLM_cifti	Summarize a '"BayesGLM_cifti"' object
print.summary.prev_BayesGLM	Summarize a '"prev_BayesGLM"' object
print.summary.prev_BayesGLM_cifti	Summarize a '"prev_BayesGLM_cifti"' object
pw_estimate	Estimate residual autocorrelation for prewhitening
pw_smooth	Smooth AR coefficients and white noise variance
return_INLA_Param	return_INLA
scale_BOLD_Param	scale_BOLD
scale_design_Param	scale_design
seed_Param	seed
session_names_Param	session_names
summary.act_BayesGLM	Summarize a '"act_BayesGLM"' object
summary.act_BayesGLM_cifti	Summarize a '"act_BayesGLM_cifti"' object
summary.BayesGLM	Summarize a '"BayesGLM"' object
summary.BayesGLM2	Summarize a '"BayesGLM2"' object
summary.BayesGLM2_cifti	Summarize a '"BayesGLM2_cifti"' object
summary.BayesGLM_cifti	Summarize a '"BayesGLM_cifti"' object
summary.prev_BayesGLM	Summarize a '"prev_BayesGLM"' object
summary.prev_BayesGLM_cifti	Summarize a '"prev_BayesGLM_cifti"' object
task_names_Param	task_names
trim_INLA_Param	trim_INLA
verbose_Param	verbose
vertex_areas	Surface area of each vertex
vertices_Param	vertices