Population Genetic Data Analysis Using Genepop

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Documentation for package ‘genepop’ version 1.2.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

genepop-package	Population genetic analyses using the Genepop software
basic_info	Allele and genotype frequencies
clean_workdir	Removing files created by Genepop
Contingency-test	Exact test on a single contingency table
conversion	File conversions
Differentiation	Tests of genic and genotypic differentiation
diploidize	Various data manipulation utilities
Fst	Fst (or rho_ST) estimation
genedivFis	Gene diversities and Fis (or rho_IS)
genepop	Population genetic analyses using the Genepop software
genepop-utils	Programming utilities
genepopExample	Copy an example file from the Genepop package distribution
getVersion	Programming utilities
GUI	Call an experimental GUI for Genepop
Hardy-Weinberg	Tests of Hardy-Weinberg genotypic proportions
HWtable_analysis	Tests of Hardy-Weinberg genotypic proportions
IBD	Isolation by distance
ibd	Isolation by distance
Linkage	Tables and exact test for genotypic linkage disequilibrium
manipulation	Various data manipulation utilities
Nm_private	Private allele method
nulls	Estimation of allele frequencies under genotyping failure.
pop_to_indiv	Various data manipulation utilities
relabel_alleles	Various data manipulation utilities
sample_haploid	Various data manipulation utilities
setMantelSeed	Set random generator seed for Mantel test
setRandomSeed	Set random generator seed (except for Mantel test)
set_restriction	Programming utilities
struc	Exact test on a single contingency table
test_diff	Tests of genic and genotypic differentiation
test_HW	Tests of Hardy-Weinberg genotypic proportions
test_LD	Tables and exact test for genotypic linkage disequilibrium
write_LD_tables	Tables and exact test for genotypic linkage disequilibrium