Transform Files to 'microtable' Object with 'microeco' Package

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Documentation for package ‘file2meco’ version 0.7.1

• DESCRIPTION file.

Help Pages

check_match_table	Replace the names use match table
check_sample_table	Read sample table
CHOCOPhlAn_taxonomy	The CHOCOPhlAn_taxonomy data
file2meco	Introduction to file2meco package (https://github.com/ChiLiubio/file2meco)
humann2meco	Transform 'HUMAnN' metagenomic results to 'microtable' object.
meco2phyloseq	Transform 'microtable' object of 'microeco' package to the 'phyloseq' object of 'phyloseq' package.
MetaCyc_pathway_map	The MetaCyc_pathway_map data
metacyc_pathway_website	Get the website for a 'MetaCyc' pathway name
mpa2meco	Transform metagenomic classification results of 'mpa' format to 'microtable' object.
ncyc2meco	Transform 'NCycDB' or 'PCycDB' metagenomic abundance to 'microtable' object.
ncyc_map	The ncyc_map data
pcyc_map	The pcyc_map data
phyloseq2meco	Transform the 'phyloseq' object of 'phyloseq' package to 'microtable' object of 'microeco' package.
qiime1meco	Transform 'QIIME' results to 'microtable' object.
qiime2meco	Transform 'QIIME2' results to 'microtable' object.
vs2meco	Transform viromescan results to 'microtable' object.