Transform Files to 'microtable' Object with 'microeco' Package

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Documentation for package ‘file2meco’ version 0.8.0

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check_match_table Replace the names use match table
check_sample_table Read sample table
CHOCOPhlAn_taxonomy The CHOCOPhlAn_taxonomy data
file2meco Introduction to file2meco package (https://github.com/ChiLiubio/file2meco)
humann2meco Transform 'HUMAnN' metagenomic results to 'microtable' object.
meco2phyloseq Transform 'microtable' object of 'microeco' package to the 'phyloseq' object of 'phyloseq' package <doi:10.1371/journal.pone.0061217>.
meco2tse Transform 'microtable' object of 'microeco' package to the 'TreeSummarizedExperiment' object of 'TreeSummarizedExperiment' package <doi:10.12688/f1000research.26669.2>.
MetaCyc_pathway_map The MetaCyc_pathway_map data
metacyc_pathway_website Get the website for a 'MetaCyc' pathway name
mpa2meco Transform metagenomic classification results of 'mpa' format to 'microtable' object.
ncyc2meco Transform 'NCycDB' or 'PCycDB' metagenomic abundance to 'microtable' object.
ncyc_map The ncyc_map data
pcyc_map The pcyc_map data
phyloseq2meco Transform the 'phyloseq' object of 'phyloseq' package to 'microtable' object of 'microeco' package.
qiime1meco Transform 'QIIME' results to 'microtable' object.
qiime2meco Transform 'QIIME2' results to 'microtable' object.
tse2meco Transform the 'TreeSummarizedExperiment' object to 'microtable' object of 'microeco' package.
vs2meco Transform viromescan results to 'microtable' object.