Modeling Phylogenetic Signals using Eigenvector Maps

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Documentation for package ‘MPSEM’ version 0.4-1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

MPSEM-package	Modeling Phylogenetic Signals using Eigenvector Maps
add.edge	Graph Manipulation Functions
add.vertex	Graph Manipulation Functions
as.data.frame.PEM	Class and Methods for Phylogenetic Eigenvector Maps (PEM)
collapse.vertex	Graph Manipulation Functions
EvolveOptimMarkovTree	Simulates the Evolution of a Quantitative Trait.
getAncGraphLocations	Phylogenetic Eigenvector Maps
getGraphLocations	Phylogenetic Eigenvector Maps
graph-class	Class and Method for Directed Graphs
graph-functions	Graph Manipulation Functions
lm-utils	Linear Modelling Utility Functions
lmforwardsequentialAICc	Linear Modelling Utility Functions
lmforwardsequentialsidak	Linear Modelling Utility Functions
Locations2PEMscores	Phylogenetic Eigenvector Maps
OUvar	Simulates the Evolution of a Quantitative Trait.
PEM-class	Class and Methods for Phylogenetic Eigenvector Maps (PEM)
PEM-functions	Phylogenetic Eigenvector Maps
PEM.build	Phylogenetic Eigenvector Maps
PEM.fitSimple	Phylogenetic Eigenvector Maps
PEM.forcedSimple	Phylogenetic Eigenvector Maps
PEM.updater	Phylogenetic Eigenvector Maps
PEMInfluence	Phylogenetic Eigenvector Maps
PEMvar	Simulates the Evolution of a Quantitative Trait.
PEMweights	Phylogenetic Eigenvector Maps
Phylo2DirectedGraph	Graph Manipulation Functions
pop.graph	Graph Manipulation Functions
predict.PEM	Class and Methods for Phylogenetic Eigenvector Maps (PEM)
print.graph	Class and Method for Directed Graphs
print.PEM	Class and Methods for Phylogenetic Eigenvector Maps (PEM)
rm.edge	Graph Manipulation Functions
rm.vertex	Graph Manipulation Functions
trait-simulator	Simulates the Evolution of a Quantitative Trait.
TraitOUsimTree	Simulates the Evolution of a Quantitative Trait.
TraitVarGraphSim	Simulates the Evolution of a Quantitative Trait.