Automated Cleaning of Occurrence Records from Biological Collections


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Documentation for package ‘CoordinateCleaner’ version 2.0-18

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CoordinateCleaner-package CoordinateCleaner
buffland Global Coastlines buffered by 1 degree
cc_cap Identify Coordinates in Vicinity of Country Capitals.
cc_cen Identify Coordinates in Vicinity of Country and Province Centroids
cc_coun Identify Coordinates Outside their Reported Country
cc_dupl Identify Duplicated Records
cc_equ Identify Records with Identical lat/lon
cc_gbif Identify Records Assigned to GBIF Headquarters
cc_inst Identify Records in the Vicinity of Biodiversity Institutions
cc_iucn Identify Records Outside Natural Ranges
cc_outl Identify Geographic Outliers in Species Distributions
cc_sea Identify Non-terrestrial Coordinates
cc_urb Identify Records Inside Urban Areas
cc_val Identify Invalid lat/lon Coordinates
cc_zero Identify Zero Coordinates
cd_ddmm Identify Datasets with a Degree Conversion Error
cd_round Identify Datasets with Rasterized Coordinates
cf_age Identify Fossils with Outlier Age
cf_equal Identify Fossils with equal min and max age
cf_outl Identify Outlier Records in Space and Time
cf_range Identify Fossils with Extreme Age Ranges
CleanCoordinates Geographic Cleaning of Coordinates from Biologic Collections
CleanCoordinatesDS Coordinate Cleaning using Dataset Properties
CleanCoordinatesFOS Geographic and Temporal Cleaning of Records from Fossil Collections
clean_coordinates Geographic Cleaning of Coordinates from Biologic Collections
clean_dataset Coordinate Cleaning using Dataset Properties
clean_fossils Geographic and Temporal Cleaning of Records from Fossil Collections
CoordinateCleaner CoordinateCleaner
CoordinateCleaner-defunct Defunct functions in CoordinateCleaener
countryref Country Centroids and Country Capitals
institutions Global Locations of Biodiversity Institutions
is.spatialvalid Geographic Cleaning of Coordinates from Biologic Collections
pbdb_example Example data from the Paleobiologydatabase
plot.spatialvalid Plot Method for Class Spatialvalid
summary.spatialvalid Geographic Cleaning of Coordinates from Biologic Collections
write_pyrate Create Input Files for PyRate