.render.server.info |
Auxiliary functions |
DengueBEASTMCC |
Dengue fever BEAST MCC tree |
DengueSeqs |
Dengue fever sequences |
DengueTrees |
BEAST analysis of Dengue fever |
findGroves |
Identify clusters of similar trees |
findMRCIs |
Find MRCIs |
fluTrees |
BEAST analysis of seasonal influenza (A/H3N2) |
linearMrca |
Linear MRCA function |
makeCollapsedTree |
Collapse a tree into a single tip per category |
medTree |
Geometric median tree function |
multiDist |
Metric function for 'multiPhylo' input |
plotGroves |
Scatterplot of groups of trees |
plotGrovesD3 |
Scatterplot of groups of trees using 'scatterD3' |
plotTreeDiff |
Plot tree differences |
refTreeDist |
Metric function for comparing a reference 'phylo' to 'multiPhylo' input |
relatedTreeDist |
Tree distance when trees have "related" tips |
simulateIndTree |
Simulate randomised "individuals" tree |
tipDiff |
Find tip position differences |
tipsMRCAdepths |
Tip-tip MRCA depths |
treeConcordance |
Tree concordance |
treeDist |
Metric function |
treespace |
Phylogenetic tree exploration |
treespaceServer |
Web-based tree explorer |
treeVec |
Tree vector function |
wiwMedTree |
Median transmission tree |
wiwTreeDist |
Transmission tree distance |
woodmiceTrees |
Bootstrap trees from woodmouse dataset |