simIDM-package |
'simIDM' Package |
addStaggeredEntry |
Staggered Study Entry |
assert_intervals |
Assertion for vector describing intervals |
assert_positive_number |
Assertion for Positive Number |
avgHRExpOS |
Average OS Hazard Ratio from Constant Transition Hazards |
avgHRIntegExpOS |
Helper Function for 'avgHRExpOS()' |
censoringByNumberEvents |
Event-driven censoring. |
corPFSOS |
Correlation of PFS and OS event times for data from the IDM |
corTrans |
Correlation of PFS and OS event times for Different Transition Models |
empSignificant |
Empirical Significance for a List of Simulated Trials |
estimateParams |
Estimate Parameters of the Multistate Model Using Clinical Trial Data |
ExpHazOS |
OS Hazard Function from Constant Transition Hazards |
exponential_transition |
Transition Hazards for Exponential Event Times |
ExpQuantOS |
Quantile function for OS survival function induced by an illness-death model |
ExpSurvOS |
OS Survival Function from Constant Transition Hazards |
ExpSurvPFS |
PFS Survival Function from Constant Transition Hazards |
expvalOSInteg |
Helper Function for Computing E(OS^2) |
expvalPFSInteg |
Helper Function for Computing E(PFS^2) |
getCensoredData |
Helper function for 'censoringByNumberEvents' |
getClinicalTrials |
Simulation of a Large Number of Oncology Clinical Trials |
getDatasetWideFormat |
Conversion of a Data Set from One Row per Transition to One Row per Patient |
getEventsAll |
Number of recruited/censored/ongoing Patients. |
getInit |
Retrieve Initial Parameter Vectors for Likelihood Maximization |
getInit.ExponentialTransition |
Retrieve Initial Parameter Vectors for Likelihood Maximization |
getInit.WeibullTransition |
Retrieve Initial Parameter Vectors for Likelihood Maximization |
getNumberEvents |
Helper Function for 'trackEventsPerTrial' |
getOneClinicalTrial |
Simulation of a Single Oncology Clinical Trial |
getOneToTwoRows |
Transitions from the Intermediate State to the Absorbing State |
getPCWDistr |
Piecewise Exponentially Distributed Event Times |
getPWCHazard |
Piecewise Constant Hazard Values |
getResults |
Format Results of Parameter Estimation for Different Transition Models |
getResults.ExponentialTransition |
Format Results of Parameter Estimation for Different Transition Models |
getResults.WeibullTransition |
Format Results of Parameter Estimation for Different Transition Models |
getSimulatedData |
Simulate Data Set from an Illness-Death Model |
getSumPCW |
Sum of Two Piecewise Constant Hazards |
getTarget |
Generate the Target Function for Optimization |
getTarget.ExponentialTransition |
Generate the Target Function for Optimization |
getTarget.WeibullTransition |
Generate the Target Function for Optimization |
getTimePoint |
Time-point by which a specified number of events occurred. |
getWaitTimeSum |
Event Times Distributed as Sum of Weibull |
haz |
Hazard Function for Different Transition Models |
haz.ExponentialTransition |
Hazard Function for Different Transition Models |
haz.PWCTransition |
Hazard Function for Different Transition Models |
haz.WeibullTransition |
Hazard Function for Different Transition Models |
logRankTest |
Log-Rank Test for a Single Trial |
log_p11 |
Probability of Remaining in Progression Between Two Time Points for Different Transition Models |
negLogLik |
Compute the Negative Log-Likelihood for a Given Data Set and Transition Model |
PCWInversionMethod |
Single Piecewise Exponentially Distributed Event Time |
piecewise_exponential |
Transition Hazards for Piecewise Exponential Event Times |
prepareData |
Preparation of a Data Set to Compute Log-likelihood |
pwA |
Cumulative Hazard for Piecewise Constant Hazards |
PWCsurvOS |
OS Survival Function from Piecewise Constant Hazards |
PWCsurvPFS |
PFS Survival Function from Piecewise Constant Hazards |
simIDM |
'simIDM' Package |
survOS |
OS Survival Function for Different Transition Models |
survOS.ExponentialTransition |
OS Survival Function for Different Transition Models |
survOS.PWCTransition |
OS Survival Function for Different Transition Models |
survOS.WeibullTransition |
OS Survival Function for Different Transition Models |
survPFS |
PFS Survival Function for Different Transition Models |
survPFS.ExponentialTransition |
PFS Survival Function for Different Transition Models |
survPFS.PWCTransition |
PFS Survival Function for Different Transition Models |
survPFS.WeibullTransition |
PFS Survival Function for Different Transition Models |
survPFSOS |
Survival Function of the Product PFS*OS for Different Transition Models |
survTrans |
Survival Function for Different Transition Models |
survTrans.ExponentialTransition |
Survival Function for Different Transition Models |
survTrans.WeibullTransition |
Survival Function for Different Transition Models |
trackEventsPerTrial |
Event tracking in an oncology trial. |
WeibSurvOS |
OS Survival Function from Weibull Transition Hazards |
WeibSurvPFS |
PFS Survival Function from Weibull Transition Hazards |
weibull_transition |
Transition Hazards for Weibull Distributed Event Times |