Co-Correspondence Analysis Methods

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Documentation for package ‘cocorresp’ version 0.4-4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

cocorresp-package	Co-correspondence analysis ordination methods for community ecology
beetles	Carabid beetles and vascular plants in Dutch roadside verges
biplot.predcoca	Biplots of co-correspondence analysis models
biplot.symcoca	Biplots of co-correspondence analysis models
bryophyte	Bryophytes and vascular plants in Carpathian spring meadows
coca	Fit Co-Correspondence Analysis Ordination Models
coca.default	Fit Co-Correspondence Analysis Ordination Models
coca.formula	Fit Co-Correspondence Analysis Ordination Models
cocorresp	Co-correspondence analysis ordination methods for community ecology
coinertia	Co-inertia analysis
coinertia.default	Co-inertia analysis
coinertiaI	Coinertia analysis with identity matrices
corAxis	Correlation between ordination axes
corAxis.default	Correlation between ordination axes
corAxis.symcoca	Correlation between ordination axes
crossval	Cross-validation for predictive Co-Correspondence Analysis models
envfit.coca	Fit an environmental vector or factor to a Co-CA ordination
fitCoinertia	Co-inertia analysis
fitted.symcoca	Fitted values of a Symmetric Co-Correpsondence analysis model.
loadings	CoCA species loadings
loadings.predcoca	CoCA species loadings
loadings.symcoca	CoCA species loadings
lodaings.default	CoCA species loadings
mcChi	Standardised chi-square residuals
permutest.coca	Permutation test for predictive co-correspondence analysis models
plants	Carabid beetles and vascular plants in Dutch roadside verges
plot.predcoca	Biplots for predictive co-correspondence analysis
plot.symcoca	Plots for symmetric co-correspondence analysis
points.coca	Add points to a Co-CA plot
print.crossval	Cross-validation for predictive Co-Correspondence Analysis models
print.fitCoinertia	Co-inertia analysis
print.fitted.symcoca	Fitted values of a Symmetric Co-Correpsondence analysis model.
print.permutest.coca	Permutation test for predictive co-correspondence analysis models
print.predcoca	Fit Co-Correspondence Analysis Ordination Models
print.summary.crossval	Cross-validation for predictive Co-Correspondence Analysis models
print.summary.fitCoinertia	Co-inertia analysis
print.summary.permutest.coca	Permutation test for predictive co-correspondence analysis models
print.summary.predcoca	Summarizing Co-CA Model Fits
print.summary.symcoca	Summarizing Co-CA Model Fits
print.symcoca	Fit Co-Correspondence Analysis Ordination Models
rescale	Rescales CoCA species scores
rescale.default	Rescales CoCA species scores
rescale.symcoca	Rescales CoCA species scores
resid.symcoca	Extract Model Residuals
scaleChi	Standardised chi-square residuals
scores.predcoca	Get Species or Site Scores from an Ordination
scores.symcoca	Get Species or Site Scores from an Ordination
screeplot.symcoca	Screeplot for symmetric co-correspondence analysis
simpls	Modified version of Sijmen de Jong's SIMPLS
summary.crossval	Cross-validation for predictive Co-Correspondence Analysis models
summary.fitCoinertia	Co-inertia analysis
summary.permutest.coca	Permutation test for predictive co-correspondence analysis models
summary.predcoca	Summarizing Co-CA Model Fits
summary.symcoca	Summarizing Co-CA Model Fits
vascular	Bryophytes and vascular plants in Carpathian spring meadows
verges	Carabid beetles and vascular plants in Dutch roadside verges
weights.predcoca	Exctract CoCA model weights
weights.symcoca	Exctract CoCA model weights