cocorresp-package |
Co-correspondence analysis ordination methods for community ecology |
beetles |
Carabid beetles and vascular plants in Dutch roadside verges |
biplot.predcoca |
Biplots of co-correspondence analysis models |
biplot.symcoca |
Biplots of co-correspondence analysis models |
bryophyte |
Bryophytes and vascular plants in Carpathian spring meadows |
coca |
Fit Co-Correspondence Analysis Ordination Models |
coca.default |
Fit Co-Correspondence Analysis Ordination Models |
coca.formula |
Fit Co-Correspondence Analysis Ordination Models |
cocorresp |
Co-correspondence analysis ordination methods for community ecology |
coinertia |
Co-inertia analysis |
coinertia.default |
Co-inertia analysis |
coinertiaI |
Coinertia analysis with identity matrices |
corAxis |
Correlation between ordination axes |
corAxis.default |
Correlation between ordination axes |
corAxis.symcoca |
Correlation between ordination axes |
crossval |
Cross-validation for predictive Co-Correspondence Analysis models |
envfit.coca |
Fit an environmental vector or factor to a Co-CA ordination |
fitCoinertia |
Co-inertia analysis |
fitted.symcoca |
Fitted values of a Symmetric Co-Correpsondence analysis model. |
loadings |
CoCA species loadings |
loadings.predcoca |
CoCA species loadings |
loadings.symcoca |
CoCA species loadings |
lodaings.default |
CoCA species loadings |
mcChi |
Standardised chi-square residuals |
permutest.coca |
Permutation test for predictive co-correspondence analysis models |
plants |
Carabid beetles and vascular plants in Dutch roadside verges |
plot.predcoca |
Biplots for predictive co-correspondence analysis |
plot.symcoca |
Plots for symmetric co-correspondence analysis |
points.coca |
Add points to a Co-CA plot |
print.crossval |
Cross-validation for predictive Co-Correspondence Analysis models |
print.fitCoinertia |
Co-inertia analysis |
print.fitted.symcoca |
Fitted values of a Symmetric Co-Correpsondence analysis model. |
print.permutest.coca |
Permutation test for predictive co-correspondence analysis models |
print.predcoca |
Fit Co-Correspondence Analysis Ordination Models |
print.summary.crossval |
Cross-validation for predictive Co-Correspondence Analysis models |
print.summary.fitCoinertia |
Co-inertia analysis |
print.summary.permutest.coca |
Permutation test for predictive co-correspondence analysis models |
print.summary.predcoca |
Summarizing Co-CA Model Fits |
print.summary.symcoca |
Summarizing Co-CA Model Fits |
print.symcoca |
Fit Co-Correspondence Analysis Ordination Models |
rescale |
Rescales CoCA species scores |
rescale.default |
Rescales CoCA species scores |
rescale.symcoca |
Rescales CoCA species scores |
resid.symcoca |
Extract Model Residuals |
scaleChi |
Standardised chi-square residuals |
scores.predcoca |
Get Species or Site Scores from an Ordination |
scores.symcoca |
Get Species or Site Scores from an Ordination |
screeplot.symcoca |
Screeplot for symmetric co-correspondence analysis |
simpls |
Modified version of Sijmen de Jong's SIMPLS |
summary.crossval |
Cross-validation for predictive Co-Correspondence Analysis models |
summary.fitCoinertia |
Co-inertia analysis |
summary.permutest.coca |
Permutation test for predictive co-correspondence analysis models |
summary.predcoca |
Summarizing Co-CA Model Fits |
summary.symcoca |
Summarizing Co-CA Model Fits |
vascular |
Bryophytes and vascular plants in Carpathian spring meadows |
verges |
Carabid beetles and vascular plants in Dutch roadside verges |
weights.predcoca |
Exctract CoCA model weights |
weights.symcoca |
Exctract CoCA model weights |