Co-Correspondence Analysis Methods


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Documentation for package ‘cocorresp’ version 0.4-3

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cocorresp-package Co-correspondence analysis ordination methods for community ecology
beetles Carabid beetles and vascular plants in Dutch roadside verges
biplot.predcoca Biplots of co-correspondence analysis models
biplot.symcoca Biplots of co-correspondence analysis models
bryophyte Bryophytes and vascular plants in Carpathian spring meadows
coca Fit Co-Correspondence Analysis Ordination Models
coca.default Fit Co-Correspondence Analysis Ordination Models
coca.formula Fit Co-Correspondence Analysis Ordination Models
cocorresp Co-correspondence analysis ordination methods for community ecology
coinertia Co-inertia analysis
coinertia.default Co-inertia analysis
coinertiaI Coinertia analysis with identity matrices
corAxis Correlation between ordination axes
corAxis.default Correlation between ordination axes
corAxis.symcoca Correlation between ordination axes
crossval Cross-validation for predictive Co-Correspondence Analysis models
envfit.coca Fit an environmental vector or factor to a Co-CA ordination
fitCoinertia Co-inertia analysis
fitted.symcoca Fitted values of a Symmetric Co-Correpsondence analysis model.
loadings CoCA species loadings
loadings.predcoca CoCA species loadings
loadings.symcoca CoCA species loadings
lodaings.default CoCA species loadings
mcChi Standardised chi-square residuals
permutest.coca Permutation test for predictive co-correspondence analysis models
plants Carabid beetles and vascular plants in Dutch roadside verges
plot.predcoca Biplots for predictive co-correspondence analysis
plot.symcoca Plots for symmetric co-correspondence analysis
points.coca Add points to a Co-CA plot
print.crossval Cross-validation for predictive Co-Correspondence Analysis models
print.fitCoinertia Co-inertia analysis
print.fitted.symcoca Fitted values of a Symmetric Co-Correpsondence analysis model.
print.permutest.coca Permutation test for predictive co-correspondence analysis models
print.predcoca Fit Co-Correspondence Analysis Ordination Models
print.summary.crossval Cross-validation for predictive Co-Correspondence Analysis models
print.summary.fitCoinertia Co-inertia analysis
print.summary.permutest.coca Permutation test for predictive co-correspondence analysis models
print.summary.predcoca Summarizing Co-CA Model Fits
print.summary.symcoca Summarizing Co-CA Model Fits
print.symcoca Fit Co-Correspondence Analysis Ordination Models
rescale Rescales CoCA species scores
rescale.default Rescales CoCA species scores
rescale.symcoca Rescales CoCA species scores
resid.symcoca Extract Model Residuals
scaleChi Standardised chi-square residuals
scores.predcoca Get Species or Site Scores from an Ordination
scores.symcoca Get Species or Site Scores from an Ordination
screeplot.symcoca Screeplot for symmetric co-correspondence analysis
simpls Modified version of Sijmen de Jong's SIMPLS
summary.crossval Cross-validation for predictive Co-Correspondence Analysis models
summary.fitCoinertia Co-inertia analysis
summary.permutest.coca Permutation test for predictive co-correspondence analysis models
summary.predcoca Summarizing Co-CA Model Fits
summary.symcoca Summarizing Co-CA Model Fits
vascular Bryophytes and vascular plants in Carpathian spring meadows
verges Carabid beetles and vascular plants in Dutch roadside verges
weights.predcoca Exctract CoCA model weights
weights.symcoca Exctract CoCA model weights