Analysis of Diffusion Weighted Imaging (DWI) Data
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Documentation for package ‘dti’ version 1.5.4
- DESCRIPTION file.
- Code demos. Use demo() to run them.
Help Pages
| dti-package | Analysis of Diffusion Weighted Imaging (DWI) Data |
-- A --
| AdjacencyMatrix | Create an adjacency matrix from fiber tracking results |
| aflsigmc | Estimate noise variance for multicoil MR systems |
| afsigmc | Estimate noise variance for multicoil MR systems |
| awslsigmc | Estimate noise variance for multicoil MR systems |
| awssigmc | Estimate noise variance for multicoil MR systems |
-- C --
| colqFA | FA map color scheme |
| combineDWIdata | Combine two objects of class "dtiData") |
| combineFibers | Methods for Function 'tracking' in Package 'dti' |
| combineFibers-method | Methods for Function 'tracking' in Package 'dti' |
| combineFibers-methods | Methods for Function 'tracking' in Package 'dti' |
-- D --
| dkiIndices | Diffusion Kurtosis Imaging (DKI) |
| dkiIndices-class | Class "dwi" |
| dkiIndices-method | Diffusion Kurtosis Imaging (DKI) |
| dkiIndices-methods | Diffusion Kurtosis Imaging (DKI) |
| dkiTensor | Diffusion Kurtosis Imaging (DKI) |
| dkiTensor-class | Class "dwi" |
| dkiTensor-method | Diffusion Kurtosis Imaging (DKI) |
| dkiTensor-methods | Diffusion Kurtosis Imaging (DKI) |
| dti | Analysis of Diffusion Weighted Imaging (DWI) Data |
| dti.options | Set and manipulate image orientations for plots. |
| dti.smooth | Methods for Function 'dti.smooth' in Package 'dti' |
| dti.smooth-method | Methods for Function 'dti.smooth' in Package 'dti' |
| dti.smooth-methods | Methods for Function 'dti.smooth' in Package 'dti' |
| dtiData | Read Diffusion Weighted Data |
| dtiData-class | Class "dwi" |
| dtiIndices | Methods for Function 'dtiIndices' in Package 'dti' |
| dtiIndices-class | Class "dwi" |
| dtiIndices-method | Methods for Function 'dtiIndices' in Package 'dti' |
| dtiIndices-methods | Methods for Function 'dtiIndices' in Package 'dti' |
| dtiTensor | Methods for Function 'dtiTensor' in Package 'dti' |
| dtiTensor-class | Class "dwi" |
| dtiTensor-method | Methods for Function 'dtiTensor' in Package 'dti' |
| dtiTensor-methods | Methods for Function 'dtiTensor' in Package 'dti' |
| dwi-class | Class "dwi" |
| dwi.smooth | Smooth DWI data |
| dwi.smooth-method | Smooth DWI data |
| dwi.smooth-methods | Smooth DWI data |
| dwi.smooth.ms | Smooth DWI data |
| dwi.smooth.ms-method | Smooth DWI data |
| dwiFiber-class | Class "dwi" |
| dwiMD | Methods for Mean Diffusivity in Package 'dti' |
| dwiMD-method | Methods for Mean Diffusivity in Package 'dti' |
| dwiMixtensor | Methods for Function 'dwiMixtensor' in Package 'dti' |
| dwiMixtensor-class | Class "dwi" |
| dwiMixtensor-method | Methods for Function 'dwiMixtensor' in Package 'dti' |
| dwiMixtensor-methods | Methods for Function 'dwiMixtensor' in Package 'dti' |
| dwiMtCombine | Methods for Function 'dwiMixtensor' in Package 'dti' |
| dwiMtCombine-method | Methods for Function 'dwiMixtensor' in Package 'dti' |
| dwiMtCombine-methods | Methods for Function 'dwiMixtensor' in Package 'dti' |
| dwiQball | Methods for Function 'dwiQball' in Package 'dti' |
| dwiQball-class | Class "dwi" |
| dwiQball-method | Methods for Function 'dwiQball' in Package 'dti' |
| dwiQball-methods | Methods for Function 'dwiQball' in Package 'dti' |
| dwiRiceBias | Correction for Rician Bias |
| dwiRiceBias-method | Correction for Rician Bias |
| dwiRiceBias-methods | Correction for Rician Bias |
| dwiSqrtODF | Methods for positive definite EAP and ODF estimation in Package 'dti' |
| dwiSqrtODF-method | Methods for positive definite EAP and ODF estimation in Package 'dti' |
| dwiSqrtODF-methods | Methods for positive definite EAP and ODF estimation in Package 'dti' |
-- E --
| extract | Methods for Function 'extract' and '[' in Package 'dti' |
| extract-method | Methods for Function 'extract' and '[' in Package 'dti' |
| extract-methods | Methods for Function 'extract' and '[' in Package 'dti' |
-- G --
| getmask | Methods for Function 'getmask' in Package 'dti' |
| getmask-method | Methods for Function 'getmask' in Package 'dti' |
| getmask-methods | Methods for Function 'getmask' in Package 'dti' |
| getsdofsb | Estimate the noise standard deviation |
| getsdofsb-method | Estimate the noise standard deviation |
| getsdofsb-methods | Estimate the noise standard deviation |
-- I --
| icosa0 | Polyeders derived from the Icosahedron (icosa0) by sequential triangulation of surface triangles |
| icosa1 | Polyeders derived from the Icosahedron (icosa0) by sequential triangulation of surface triangles |
| icosa2 | Polyeders derived from the Icosahedron (icosa0) by sequential triangulation of surface triangles |
| icosa3 | Polyeders derived from the Icosahedron (icosa0) by sequential triangulation of surface triangles |
| icosa4 | Polyeders derived from the Icosahedron (icosa0) by sequential triangulation of surface triangles |
-- M --
| MedINRIA | Read/Write Diffusion Tensor Data from/to NIFTI File |
| medinria | Read/Write Diffusion Tensor Data from/to NIFTI File |
| medinria2tensor | Read/Write Diffusion Tensor Data from/to NIFTI File |
-- O --
| optgrad | Optimal gradient directions |
| optgradients | Optimal gradient directions for number of gradients between 6 and 162 |
-- P --
| plot-method | Methods for Function 'plot' in Package 'dti' |
| plot-methods | Methods for Function 'plot' in Package 'dti' |
| polyeder | Polyeders derived from the Icosahedron (icosa0) by sequential triangulation of surface triangles |
| print-method | Methods for Function 'print' in Package 'dti' |
| print-methods | Methods for Function 'print' in Package 'dti' |
-- R --
| readDWIdata | Read Diffusion Weighted Data |
| reduceFibers | Methods for Function 'tracking' in Package 'dti' |
| reduceFibers-method | Methods for Function 'tracking' in Package 'dti' |
-- S --
| sdpar | Methods for Function 'sdpar' in Package 'dti' |
| sdpar-method | Methods for Function 'sdpar' in Package 'dti' |
| sdpar-methods | Methods for Function 'sdpar' in Package 'dti' |
| selectFibers | Methods for Function 'tracking' in Package 'dti' |
| selectFibers-method | Methods for Function 'tracking' in Package 'dti' |
| selectFibers-methods | Methods for Function 'tracking' in Package 'dti' |
| setmask | Methods for Function 'setmask' in Package 'dti' |
| setmask-method | Methods for Function 'setmask' in Package 'dti' |
| setmask-methods | Methods for Function 'setmask' in Package 'dti' |
| show-method | Methods for Function 'show' in Package 'dti' |
| show-methods | Methods for Function 'show' in Package 'dti' |
| show3d | Methods for Function 'show3d' in Package 'dti' |
| show3d-method | Methods for Function 'show3d' in Package 'dti' |
| show3d-methods | Methods for Function 'show3d' in Package 'dti' |
| showFAColorScale | Writes an image with the colqFA colorscale to disk. |
| subsetg | Create an objects of class "dtiData" containing only a subset of gradient directions. |
| summary-method | Methods for Function 'summary' in Package 'dti' |
| summary-methods | Methods for Function 'summary' in Package 'dti' |
-- T --
| tensor2medinria | Read/Write Diffusion Tensor Data from/to NIFTI File |
| touchingFibers | Methods for Function 'tracking' in Package 'dti' |
| touchingFibers-method | Methods for Function 'tracking' in Package 'dti' |
| touchingFibers-methods | Methods for Function 'tracking' in Package 'dti' |
| tracking | Methods for Function 'tracking' in Package 'dti' |
| tracking-method | Methods for Function 'tracking' in Package 'dti' |
| tracking-methods | Methods for Function 'tracking' in Package 'dti' |
-- misc --
| [-method | Methods for Function 'extract' and '[' in Package 'dti' |
| [-methods | Methods for Function 'extract' and '[' in Package 'dti' |