avg_expression |
Function to Calculate the Average of Gene Expressions |
check_genes_missing |
Function to Check if Genes in Gene Sets Have Missing Information in Data Matrix and Direction Matrix |
check_genes_missing_noDir |
Function to Check if Genes in Gene Sets Have Missing Information in Data Matrix |
check_genes_missing_total |
Function to Check if 100% of Genes in Gene Sets Have Missing Information in Data Matrix |
check_gene_name_match |
Function to Check if Gene IDs in the Input Gene Data Match Well |
check_gene_name_match_noDir |
Function to Check if Gene IDs in the Input Gene Data Match Well When Direction Matrix Is Missing |
data_matrix |
This is data to be included in package |
data_matrix_entrezID |
This is data to be included in package |
direction_matrix |
This is data to be included in package |
gene_sets |
This is data to be included in package |
median_expression |
Function to Calculate Median of Gene Expressions |
ssdGSA |
Single Sample Directional Gene Set Analysis (ssdGSA) |
ssdGSA_individual |
Single Sample Directional Gene Set Analysis Using Individual Weighted Scores |
ssGSA |
Function to Calculate Single Sample Gene Set Scores without Direction Matrix |
transform_ensembl_2_entrez |
Function to Transform ENSEMBL ID to ENTREZ ID |