aa.prop.list |
Amino Acid Properties |
aa2arabic |
Read a Fasta Sequence File |
alignment2count |
Functions Related to Sequence Alignment |
alignment2trancount |
Functions Related to Sequence Alignment |
arabic2arabicFile |
Read a Fasta Sequence File |
arabic2fastaFile |
Read a Fasta Sequence File |
calcPairwiseIdentity |
Functions Related to Sequence Alignment |
chi.norm |
A Transformation of Chi-squared Random Variable |
cloud9 |
9-Component Mixture Dirichlet Prior for Protein Sequences |
ddirichlet |
Functions related to mixture Dirichlet distribution |
dmdirichlet |
Functions related to mixture Dirichlet distribution |
fastaFile2arabicFile |
Read a Fasta Sequence File |
getSeqKernel |
Protein Sequence Kernels |
hmmMargLlik |
Functions related to profile HMM |
krm |
Kernel-based Regression Models |
krm.most |
Kernel-based Regression Model Maximum of adjusted Score Test |
krm.score.test |
Adjusted Score Test |
logIntegrateDirichlet |
Functions related to mixture Dirichlet distribution |
logIntegrateMixDirichlet |
Functions related to mixture Dirichlet distribution |
modifyDirichlet |
Functions related to mixture Dirichlet distribution |
rdirichlet |
Functions related to mixture Dirichlet distribution |
readArabicFile |
Read a Fasta Sequence File |
readBlockFile |
Read a Fasta Sequence File |
readFastaFile |
Read a Fasta Sequence File |
readPriorFromFile |
Functions related to profile HMM |
readSelexAsMatrix |
Read a Fasta Sequence File |
readSelexFile |
Read a Fasta Sequence File |
removeGap |
Functions Related to Sequence Alignment |
rmdirichlet |
Functions related to mixture Dirichlet distribution |
selexFile2arabicFile |
Read a Fasta Sequence File |
sim.liu.2007 |
Simulate sDataset |
sim.liu.2008 |
Simulate sDataset |
string2arabic |
Read a Fasta Sequence File |
stringList2arabicFile |
Read a Fasta Sequence File |
writeFastaFile |
Read a Fasta Sequence File |