Analysis of Incubation Data


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Documentation for package ‘incR’ version 2.1.0

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incR incR: Analysis of animal incubation
incRact Calculation of daily first incubation off-bout and last incubation on-bout
incRatt Calculation of the percentage of daily time spent in nest
incRbouts Calculation of the number of daily on- and off-bouts
incRenv Matching environmental and nest temperatures
incRenv_old Matching environmental and nest temperatures - Old version
incRplot Quick visualisation of incubation temperatures, on-bouts and off-bouts
incRprep Data preparation for incubation analysis in incR
incRscan Automated scoring of incubation
incRscan_v2 Scoring of incubation based on a fixed temperature threshold
incRt Calculation of temperature average and variance for customised time windows
incR_envdata An example data set of environmental temperatures to test the use of 'link{incRenv}'.
incR_procdata An example of incubation temperature time-series after the use of 'incRprep' and 'incRenv'.
incR_rawdata An example of incubation temperature time-series