AD |
Stability Measures |
ADM |
Stability Measures |
annotationListToMatrix |
Change annotation list to matrix |
APN |
Stability Measures |
BHI |
Biological Homogeneity Index |
BSI |
Biological Stability Index |
clusterMethods |
Class "clValid" |
clusterMethods-method |
Class "clValid" |
clusters |
Class "clValid" |
clusters-method |
Class "clValid" |
clValid |
Validate Cluster Results |
clValid-class |
Class "clValid" |
clValidObj |
Class "clValid" |
connectivity |
Connectivity Measure |
dunn |
Dunn Index |
FOM |
Stability Measures |
getRanksWeights |
Extract ranks and weights from clValid object |
measNames |
Class "clValid" |
measNames-method |
Class "clValid" |
measures |
Class "clValid" |
measures-method |
Class "clValid" |
mouse |
Mouse Mesenchymal Cells |
nClusters |
Class "clValid" |
nClusters-method |
Class "clValid" |
optimalScores |
Class "clValid" |
optimalScores-method |
Class "clValid" |
plot-method |
Class "clValid" |
plot.sota |
Plot Function for a SOTA Object |
print-method |
Class "clValid" |
print.sota |
Print Function for a SOTA Object |
readAnnotationFile |
Read in biological annotation files from external file |
show-method |
Class "clValid" |
sota |
Self-organizing Tree Algorithm (SOTA) |
stability |
Stability Measures |
summary-method |
Class "clValid" |