Validation of Clustering Results
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Documentation for package ‘clValid’ version 0.7
Help Pages
| AD | Stability Measures |
| ADM | Stability Measures |
| annotationListToMatrix | Change annotation list to matrix |
| APN | Stability Measures |
| BHI | Biological Homogeneity Index |
| BSI | Biological Stability Index |
| clusterMethods | Class "clValid" |
| clusterMethods-method | Class "clValid" |
| clusters | Class "clValid" |
| clusters-method | Class "clValid" |
| clValid | Validate Cluster Results |
| clValid-class | Class "clValid" |
| clValidObj | Class "clValid" |
| connectivity | Connectivity Measure |
| dunn | Dunn Index |
| FOM | Stability Measures |
| getRanksWeights | Extract ranks and weights from clValid object |
| measNames | Class "clValid" |
| measNames-method | Class "clValid" |
| measures | Class "clValid" |
| measures-method | Class "clValid" |
| mouse | Mouse Mesenchymal Cells |
| nClusters | Class "clValid" |
| nClusters-method | Class "clValid" |
| optimalScores | Class "clValid" |
| optimalScores-method | Class "clValid" |
| plot-method | Class "clValid" |
| plot.sota | Plot Function for a SOTA Object |
| print-method | Class "clValid" |
| print.sota | Print Function for a SOTA Object |
| readAnnotationFile | Read in biological annotation files from external file |
| show-method | Class "clValid" |
| sota | Self-organizing Tree Algorithm (SOTA) |
| stability | Stability Measures |
| summary-method | Class "clValid" |