allele_specific_stutter_model |
Stutter model where the expected stutter rate depends on the allele and locus |
gamma_model |
Defines a gamma model for peak height variability |
gf |
Stutters and size regressions for a GlobalFiler 3500 kit |
global_stutter_model |
Global stutter model where the expected stutter rate is constant across alleles and loci |
kits |
Properties such as loci, dye, sizes for most standard forensic kits |
log_normal_model |
Defines a log normal model for peak height variability |
read_allele_freqs |
Read allele frequencies in FSIgen format (.csv) |
read_size_regression |
Reads a size regression file |
read_stutter_exceptions |
Reads a stutter exceptions file with overrides for expected stutter ratios |
read_stutter_regression |
Reads a stutter regression file |
read_wide_table |
Read wide table (.txt) with Allele1, Allele2, ... columns as is |
sample_contributor_genotypes |
Sample genotypes for mixture contributors according to allele frequencies |
sample_gamma_model |
Sample gamma model(s) with parameters according to priors |
sample_genotype |
Sample a genotype according to allele frequencies |
sample_log_normal_model |
Sample log normal model(s) with parameters according to priors |
sample_log_normal_stutter_variance |
Sample log normal stutter variance parameters according to priors |
sample_LSAE |
Sample Locus Specific Amplification Efficiency (LSAE) according to prior |
sample_mixtures |
Sample mixtures with random genotypes and random parameters according to priors |
sample_mixture_from_genotypes |
Sample mixture profile with provided genotypes |
sample_offspring |
Sample offspring from two parental genotypes |
sample_pedigree_genotypes |
Sample genotypes for pedigree according to allele frequencies by allele dropping. |
SMASH_to_wide_table |
Converts SMASH (SampleName, Marker, Allele, Size, Height) data to a wide table |
stutter_type |
Defines a stutter type to be used in the allele specific stutter model. |