PANACEA-package |
PANACEA: Personalized Network-based Anti-Cancer Therapy Evaluation |
add_drugs_as_nodes |
Add Drugs as Nodes |
adj_list2mat |
Turn Adjacency List into Adjacency Matrix |
convert2alias |
Convert Input Gene Symbols to Alias |
DGIdb_interactions_df |
DGIdb Interactions Expert-curated Sources |
example_driveR_res |
Example driveR Result |
example_scores_dist |
Example PANACEA "distance-based" Method Result |
example_scores_RWR |
Example PANACEA "RWR" Method Result |
Laplacian.norm |
Graph Laplacian Normalization |
network_propagation |
Network Propagation (Random-walk with Restart) |
PANACEA |
PANACEA: Personalized Network-based Anti-Cancer Therapy Evaluation |
process_drug_target_interactions |
Process Drug-Target Interactions |
score_drugs |
Scoring of Drugs via Network-based Methods |
score_drugs_distance_based |
Distance-based Scoring of Drugs |
score_drugs_RWR_based |
RWR-based Scoring of Drugs |
STRING_adj_df |
Adjacency List for STRING v11.5 - High Confidence Interactions |
toy_W_mat |
Toy Adjacency Matrix (for examples) |