Personalized Network-Based Anti-Cancer Therapy Evaluation
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Documentation for package ‘PANACEA’ version 1.0.1
Help Pages
| PANACEA-package | PANACEA: Personalized Network-based Anti-Cancer Therapy Evaluation |
| add_drugs_as_nodes | Add Drugs as Nodes |
| adj_list2mat | Turn Adjacency List into Adjacency Matrix |
| convert2alias | Convert Input Gene Symbols to Alias |
| DGIdb_interactions_df | DGIdb Interactions Expert-curated Sources |
| example_driveR_res | Example driveR Result |
| example_scores_dist | Example PANACEA "distance-based" Method Result |
| example_scores_RWR | Example PANACEA "RWR" Method Result |
| Laplacian.norm | Graph Laplacian Normalization |
| network_propagation | Network Propagation (Random-walk with Restart) |
| PANACEA | PANACEA: Personalized Network-based Anti-Cancer Therapy Evaluation |
| process_drug_target_interactions | Process Drug-Target Interactions |
| score_drugs | Scoring of Drugs via Network-based Methods |
| score_drugs_distance_based | Distance-based Scoring of Drugs |
| score_drugs_RWR_based | RWR-based Scoring of Drugs |
| STRING_adj_df | Adjacency List for STRING v11.5 - High Confidence Interactions |
| toy_W_mat | Toy Adjacency Matrix (for examples) |