Complete Environment for Bayesian Inference

Documentation for package ‘LaplacesDemon’ version 16.1.6

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A B C D E G H I J K L M P Q R S T U V W misc

Complete Environment for Bayesian Inference

-- A --

ABB	Approximate Bayesian Bootstrap
AcceptanceRate	Acceptance Rate
as.covar	Proposal Covariance
as.indicator.matrix	Matrix Utility Functions
as.initial.values	Initial Values
as.inverse	Matrix Utility Functions
as.parm.matrix	Matrix Utility Functions
as.parm.names	Parameter Names
as.positive.definite	Matrix Utility Functions
as.positive.semidefinite	Matrix Utility Functions
as.ppc	As Posterior Predictive Check
as.symmetric.matrix	Matrix Utility Functions

-- B --

BayesFactor	Bayes Factor
BayesianBootstrap	The Bayesian Bootstrap
BayesTheorem	Bayes' Theorem
BigData	Big Data
Blocks	Blocks
BMK.Diagnostic	BMK Convergence Diagnostic
burnin	Burn-in

-- C --

caterpillar.plot	Caterpillar Plot
CenterScale	Centering and Scaling
cloglog	The log-log and complementary log-log functions
Combine	Combine Demonoid Objects
cond.plot	Conditional Plots
Consort	Consort with Laplace's Demon
Cov2Cor	Matrix Utility Functions
Cov2Prec	Precision
CovEstim	Matrix Utility Functions
CSF	Cumulative Sample Function

-- D --

dalaplace	Asymmetric Laplace Distribution: Univariate
dallaplace	Asymmetric Log-Laplace Distribution
daml	Asymmetric Multivariate Laplace Distribution
dbern	Bernoulli Distribution
dcat	Categorical Distribution
dcrmrf	Continuous Relaxation of a Markov Random Field Distribution
ddirichlet	Dirichlet Distribution
de.Finetti.Game	de Finetti's Game
deburn	De-Burn
delicit	Prior Elicitation
demonchoice	Demon Choice Data Set
demonfx	Demon FX Data Set
demonsessions	Demon Sessions Data Set
demonsnacks	Demon Snacks Data Set
demontexas	Demon Space-Time Data Set
dgpd	Generalized Pareto Distribution
dgpois	Generalized Poisson Distribution
dhalfcauchy	Half-Cauchy Distribution
dhalfnorm	Half-Normal Distribution
dhalft	Half-t Distribution
dhs	Horseshoe Distribution
dhuangwand	Huang-Wand Distribution
dhuangwandc	Huang-Wand Distribution
dhyperg	Hyperprior-g Prior and Zellner's g-Prior
dinvbeta	Inverse Beta Distribution
dinvchisq	(Scaled) Inverse Chi-Squared Distribution
dinvgamma	Inverse Gamma Distribution
dinvgaussian	Inverse Gaussian Distribution
dinvmatrixgamma	Inverse Matrix Gamma Distribution
dinvwishart	Inverse Wishart Distribution
dinvwishartc	Inverse Wishart Distribution: Cholesky Parameterization
dlaplace	Laplace Distribution: Univariate Symmetric
dlaplacem	Mixture of Laplace Distributions
dlaplacep	Laplace Distribution: Precision Parameterization
dlasso	LASSO Distribution
dllaplace	Log-Laplace Distribution: Univariate Symmetric
dlnormp	Log-Normal Distribution: Precision Parameterization
dmatrixgamma	Matrix Gamma Distribution
dmatrixnorm	Matrix Normal Distribution
dmvc	Multivariate Cauchy Distribution
dmvcc	Multivariate Cauchy Distribution: Cholesky Parameterization
dmvcp	Multivariate Cauchy Distribution: Precision Parameterization
dmvcpc	Multivariate Cauchy Distribution: Precision-Cholesky Parameterization
dmvl	Multivariate Laplace Distribution
dmvlc	Multivariate Laplace Distribution: Cholesky Parameterization
dmvn	Multivariate Normal Distribution
dmvnc	Multivariate Normal Distribution: Cholesky Parameterization
dmvnp	Multivariate Normal Distribution: Precision Parameterization
dmvnpc	Multivariate Normal Distribution: Precision-Cholesky Parameterization
dmvpe	Multivariate Power Exponential Distribution
dmvpec	Multivariate Power Exponential Distribution: Cholesky Parameterization
dmvpolya	Multivariate Polya Distribution
dmvt	Multivariate t Distribution
dmvtc	Multivariate t Distribution: Cholesky Parameterization
dmvtp	Multivariate t Distribution: Precision Parameterization
dmvtpc	Multivariate t Distribution: Precision-Cholesky Parameterization
dnorminvwishart	Normal-Inverse-Wishart Distribution
dnormlaplace	Normal-Laplace Distribution: Univariate Asymmetric
dnormm	Mixture of Normal Distributions
dnormp	Normal Distribution: Precision Parameterization
dnormv	Normal Distribution: Variance Parameterization
dnormwishart	Normal-Wishart Distribution
dpareto	Pareto Distribution
dpe	Power Exponential Distribution: Univariate Symmetric
dsdlaplace	Skew Discrete Laplace Distribution: Univariate
dsiw	Scaled Inverse Wishart Distribution
dslaplace	Skew-Laplace Distribution: Univariate
dst	Student t Distribution: Univariate
dStick	Truncated Stick-Breaking Prior Distribution
dstp	Student t Distribution: Precision Parameterization
dtrunc	Truncated Distributions
dwishart	Wishart Distribution
dwishartc	Wishart Distribution: Cholesky Parameterization
dyangberger	Yang-Berger Distribution
dyangbergerc	Yang-Berger Distribution
dzellner	Hyperprior-g Prior and Zellner's g-Prior

-- E --

elicit	Prior Elicitation
ESS	Effective Sample Size due to Autocorrelation
extrunc	Truncated Distributions

-- G --

GaussHermiteCubeRule	Matrix Utility Functions
GaussHermiteQuadRule	Math Utility Functions
Gelfand.Diagnostic	Gelfand's Convergence Diagnostic
Gelman.Diagnostic	Gelman and Rubin's MCMC Convergence Diagnostic
Geweke.Diagnostic	Geweke's Convergence Diagnostic
GIV	Generate Initial Values

-- H --

Hangartner.Diagnostic	Hangartner's Convergence Diagnostic
Heidelberger.Diagnostic	Heidelberger and Welch's MCMC Convergence Diagnostic
Hermite	Math Utility Functions
Hessian	Matrix Utility Functions

-- I --

IAT	Integrated Autocorrelation Time
Importance	Variable Importance
interval	Constrain to Interval
invcloglog	The log-log and complementary log-log functions
invlogit	The logit and inverse-logit functions
invloglog	The log-log and complementary log-log functions
is.amodal	The Mode(s) of a Vector
is.appeased	Appeased
is.bayesfactor	Logical Check of Classes
is.bayesian	Logical Check of a Bayesian Model
is.bimodal	The Mode(s) of a Vector
is.blocks	Logical Check of Classes
is.bmk	Logical Check of Classes
is.constant	Logical Check of a Constant
is.constrained	Logical Check of Constraints
is.data	Logical Check of Data
is.demonoid	Logical Check of Classes
is.demonoid.hpc	Logical Check of Classes
is.demonoid.ppc	Logical Check of Classes
is.demonoid.val	Logical Check of Classes
is.hangartner	Logical Check of Classes
is.heidelberger	Logical Check of Classes
is.importance	Logical Check of Classes
is.iterquad	Logical Check of Classes
is.iterquad.ppc	Logical Check of Classes
is.juxtapose	Logical Check of Classes
is.laplace	Logical Check of Classes
is.laplace.ppc	Logical Check of Classes
is.miss	Logical Check of Classes
is.model	Logical Check of a Model
is.multimodal	The Mode(s) of a Vector
is.pmc	Logical Check of Classes
is.pmc.ppc	Logical Check of Classes
is.pmc.val	Logical Check of Classes
is.positive.definite	Matrix Utility Functions
is.positive.semidefinite	Matrix Utility Functions
is.posteriorchecks	Logical Check of Classes
is.proper	Logical Check of Propriety
is.raftery	Logical Check of Classes
is.rejection	Logical Check of Classes
is.sensitivity	Logical Check of Classes
is.square.matrix	Matrix Utility Functions
is.stationary	Logical Check of Stationarity
is.symmetric.matrix	Matrix Utility Functions
is.trimodal	The Mode(s) of a Vector
is.unimodal	The Mode(s) of a Vector
is.vb	Logical Check of Classes
is.vb.ppc	Logical Check of Classes
IterativeQuadrature	Iterative Quadrature

-- J --

Jacobian	Matrix Utility Functions
joint.density.plot	Joint Density Plot
joint.pr.plot	Joint Probability Region Plot
Juxtapose	Juxtapose MCMC Algorithm Inefficiency

-- K --

KLD	Kullback-Leibler Divergence (KLD)
KS.Diagnostic	Kolmogorov-Smirnov Convergence Diagnostic

-- L --

LaplaceApproximation	Laplace Approximation
LaplacesDemon	Laplace's Demon
LaplacesDemon.hpc	Laplace's Demon
LaplacesDemon.RAM	LaplacesDemon RAM Estimate
Levene.Test	Levene's Test
LML	Logarithm of the Marginal Likelihood
logadd	Math Utility Functions
logdet	Matrix Utility Functions
logit	The logit and inverse-logit functions
loglog	The log-log and complementary log-log functions
LossMatrix	Loss Matrix
lower.triangle	Matrix Utility Functions
LPL.interval	Lowest Posterior Loss Interval

-- M --

MCSE	Monte Carlo Standard Error
MCSS	Monte Carlo Standard Error
MinnesotaPrior	Minnesota Prior
MISS	Multiple Imputation Sequential Sampling
Mode	The Mode(s) of a Vector
Model.Spec.Time	Model Specification Time
Modes	The Mode(s) of a Vector

-- P --

p.interval	Probability Interval
palaplace	Asymmetric Laplace Distribution: Univariate
pallaplace	Asymmetric Log-Laplace Distribution
partial	Math Utility Functions
pbern	Bernoulli Distribution
phalfcauchy	Half-Cauchy Distribution
phalfnorm	Half-Normal Distribution
phalft	Half-t Distribution
plaplace	Laplace Distribution: Univariate Symmetric
plaplacem	Mixture of Laplace Distributions
plaplacep	Laplace Distribution: Precision Parameterization
pllaplace	Log-Laplace Distribution: Univariate Symmetric
plnormp	Log-Normal Distribution: Precision Parameterization
plot.bmk	Plot Hellinger Distances
plot.demonoid	Plot samples from the output of Laplace's Demon
plot.demonoid.hpc	Plot samples from the output of Laplace's Demon
plot.demonoid.ppc	Plots of Posterior Predictive Checks
plot.importance	Plot Variable Importance
plot.iterquad	Plot the output of 'IterativeQuadrature'
plot.iterquad.ppc	Plots of Posterior Predictive Checks
plot.juxtapose	Plot MCMC Juxtaposition
plot.laplace	Plot the output of 'LaplaceApproximation'
plot.laplace.ppc	Plots of Posterior Predictive Checks
plot.miss	Plot samples from the output of MISS
plot.pmc	Plot samples from the output of PMC
plot.pmc.ppc	Plots of Posterior Predictive Checks
plot.vb	Plot the output of 'VariationalBayes'
plot.vb.ppc	Plots of Posterior Predictive Checks
plotMatrix	Plot a Numerical Matrix
plotSamples	Plot Samples
PMC	Population Monte Carlo
PMC.RAM	PMC RAM Estimate
pnormm	Mixture of Normal Distributions
pnormp	Normal Distribution: Precision Parameterization
pnormv	Normal Distribution: Variance Parameterization
PosteriorChecks	Posterior Checks
ppareto	Pareto Distribution
ppe	Power Exponential Distribution: Univariate Symmetric
Prec2Cov	Precision
prec2sd	Precision
prec2var	Precision
predict.demonoid	Posterior Predictive Checks
predict.iterquad	Posterior Predictive Checks
predict.laplace	Posterior Predictive Checks
predict.pmc	Posterior Predictive Checks
predict.vb	Posterior Predictive Checks
print.demonoid	Print an object of class 'demonoid' to the screen.
print.heidelberger	Print an object of class 'heidelberger' to the screen.
print.iterquad	Print an object of class 'iterquad' to the screen.
print.laplace	Print an object of class 'laplace' to the screen.
print.miss	Print an object of class 'miss' to the screen.
print.pmc	Print an object of class 'pmc' to the screen.
print.raftery	Print an object of class 'raftery' to the screen.
print.vb	Print an object of class 'vb' to the screen.
psdlaplace	Skew Discrete Laplace Distribution: Univariate
pslaplace	Skew-Laplace Distribution: Univariate
pst	Student t Distribution: Univariate
pstp	Student t Distribution: Precision Parameterization
ptrunc	Truncated Distributions

-- Q --

qalaplace	Asymmetric Laplace Distribution: Univariate
qallaplace	Asymmetric Log-Laplace Distribution
qbern	Bernoulli Distribution
qcat	Categorical Distribution
qhalfcauchy	Half-Cauchy Distribution
qhalfnorm	Half-Normal Distribution
qhalft	Half-t Distribution
qlaplace	Laplace Distribution: Univariate Symmetric
qlaplacep	Laplace Distribution: Precision Parameterization
qllaplace	Log-Laplace Distribution: Univariate Symmetric
qlnormp	Log-Normal Distribution: Precision Parameterization
qnormp	Normal Distribution: Precision Parameterization
qnormv	Normal Distribution: Variance Parameterization
qpareto	Pareto Distribution
qpe	Power Exponential Distribution: Univariate Symmetric
qsdlaplace	Skew Discrete Laplace Distribution: Univariate
qslaplace	Skew-Laplace Distribution: Univariate
qst	Student t Distribution: Univariate
qstp	Student t Distribution: Precision Parameterization
qtrunc	Truncated Distributions

-- R --

Raftery.Diagnostic	Raftery and Lewis's diagnostic
ralaplace	Asymmetric Laplace Distribution: Univariate
rallaplace	Asymmetric Log-Laplace Distribution
raml	Asymmetric Multivariate Laplace Distribution
rbern	Bernoulli Distribution
rcat	Categorical Distribution
rcrmrf	Continuous Relaxation of a Markov Random Field Distribution
rdirichlet	Dirichlet Distribution
read.matrix	Matrix Utility Functions
RejectionSampling	Rejection Sampling
rgpd	Generalized Pareto Distribution
rhalfcauchy	Half-Cauchy Distribution
rhalfnorm	Half-Normal Distribution
rhalft	Half-t Distribution
rhs	Horseshoe Distribution
rhuangwand	Huang-Wand Distribution
rhuangwandc	Huang-Wand Distribution
rinvbeta	Inverse Beta Distribution
rinvchisq	(Scaled) Inverse Chi-Squared Distribution
rinvgamma	Inverse Gamma Distribution
rinvgaussian	Inverse Gaussian Distribution
rinvwishart	Inverse Wishart Distribution
rinvwishartc	Inverse Wishart Distribution: Cholesky Parameterization
rlaplace	Laplace Distribution: Univariate Symmetric
rlaplacem	Mixture of Laplace Distributions
rlaplacep	Laplace Distribution: Precision Parameterization
rlasso	LASSO Distribution
rllaplace	Log-Laplace Distribution: Univariate Symmetric
rlnormp	Log-Normal Distribution: Precision Parameterization
rmatrixnorm	Matrix Normal Distribution
rmvc	Multivariate Cauchy Distribution
rmvcc	Multivariate Cauchy Distribution: Cholesky Parameterization
rmvcp	Multivariate Cauchy Distribution: Precision Parameterization
rmvcpc	Multivariate Cauchy Distribution: Precision-Cholesky Parameterization
rmvl	Multivariate Laplace Distribution
rmvlc	Multivariate Laplace Distribution: Cholesky Parameterization
rmvn	Multivariate Normal Distribution
rmvnc	Multivariate Normal Distribution: Cholesky Parameterization
rmvnp	Multivariate Normal Distribution: Precision Parameterization
rmvnpc	Multivariate Normal Distribution: Precision-Cholesky Parameterization
rmvpe	Multivariate Power Exponential Distribution
rmvpec	Multivariate Power Exponential Distribution: Cholesky Parameterization
rmvpolya	Multivariate Polya Distribution
rmvt	Multivariate t Distribution
rmvtc	Multivariate t Distribution: Cholesky Parameterization
rmvtp	Multivariate t Distribution: Precision Parameterization
rmvtpc	Multivariate t Distribution: Precision-Cholesky Parameterization
rnorminvwishart	Normal-Inverse-Wishart Distribution
rnormlaplace	Normal-Laplace Distribution: Univariate Asymmetric
rnormm	Mixture of Normal Distributions
rnormp	Normal Distribution: Precision Parameterization
rnormv	Normal Distribution: Variance Parameterization
rnormwishart	Normal-Wishart Distribution
rpareto	Pareto Distribution
rpe	Power Exponential Distribution: Univariate Symmetric
rsdlaplace	Skew Discrete Laplace Distribution: Univariate
rsiw	Scaled Inverse Wishart Distribution
rslaplace	Skew-Laplace Distribution: Univariate
rst	Student t Distribution: Univariate
rStick	Truncated Stick-Breaking Prior Distribution
rstp	Student t Distribution: Precision Parameterization
rtrunc	Truncated Distributions
rwishart	Wishart Distribution
rwishartc	Wishart Distribution: Cholesky Parameterization
rzellner	Hyperprior-g Prior and Zellner's g-Prior

-- S --

sd2prec	Precision
sd2var	Precision
SensitivityAnalysis	Sensitivity Analysis
server_Listening	Server Listening
SIR	Sampling Importance Resampling
SparseGrid	Matrix Utility Functions
Stick	Truncated Stick-Breaking
summary.demonoid.ppc	Posterior Predictive Check Summary
summary.iterquad.ppc	Posterior Predictive Check Summary
summary.laplace.ppc	Posterior Predictive Check Summary
summary.miss	MISS Summary
summary.pmc.ppc	Posterior Predictive Check Summary
summary.vb.ppc	Posterior Predictive Check Summary

-- T --

Thin	Thin
tr	Matrix Utility Functions
TransitionMatrix	Matrix Utility Functions

-- U --

upper.triangle

Matrix Utility Functions

-- V --

Validate	Holdout Validation
var2prec	Precision
var2sd	Precision
VariationalBayes	Variational Bayes
vartrunc	Truncated Distributions

-- W --

WAIC	Widely Applicable Information Criterion

-- misc --

.colVars	Complete Environment for Bayesian Inference
.iqagh	Complete Environment for Bayesian Inference
.iqaghsg	Complete Environment for Bayesian Inference
.iqcagh	Complete Environment for Bayesian Inference
.laaga	Complete Environment for Bayesian Inference
.labfgs	Complete Environment for Bayesian Inference
.labhhh	Complete Environment for Bayesian Inference
.lacg	Complete Environment for Bayesian Inference
.ladfp	Complete Environment for Bayesian Inference
.lahar	Complete Environment for Bayesian Inference
.lahj	Complete Environment for Bayesian Inference
.lalbfgs	Complete Environment for Bayesian Inference
.lalm	Complete Environment for Bayesian Inference
.lanm	Complete Environment for Bayesian Inference
.lanr	Complete Environment for Bayesian Inference
.lapso	Complete Environment for Bayesian Inference
.larprop	Complete Environment for Bayesian Inference
.lasgd	Complete Environment for Bayesian Inference
.lasoma	Complete Environment for Bayesian Inference
.laspg	Complete Environment for Bayesian Inference
.lasr1	Complete Environment for Bayesian Inference
.latr	Complete Environment for Bayesian Inference
.mcmcadmg	Complete Environment for Bayesian Inference
.mcmcafss	Complete Environment for Bayesian Inference
.mcmcagg	Complete Environment for Bayesian Inference
.mcmcahmc	Complete Environment for Bayesian Inference
.mcmcaies	Complete Environment for Bayesian Inference
.mcmcam	Complete Environment for Bayesian Inference
.mcmcamm	Complete Environment for Bayesian Inference
.mcmcamm.b	Complete Environment for Bayesian Inference
.mcmcamwg	Complete Environment for Bayesian Inference
.mcmccharm	Complete Environment for Bayesian Inference
.mcmcdemc	Complete Environment for Bayesian Inference
.mcmcdram	Complete Environment for Bayesian Inference
.mcmcdrm	Complete Environment for Bayesian Inference
.mcmcess	Complete Environment for Bayesian Inference
.mcmcgg	Complete Environment for Bayesian Inference
.mcmcggcp	Complete Environment for Bayesian Inference
.mcmcggcpp	Complete Environment for Bayesian Inference
.mcmcggdp	Complete Environment for Bayesian Inference
.mcmcggdpp	Complete Environment for Bayesian Inference
.mcmcgibbs	Complete Environment for Bayesian Inference
.mcmcharm	Complete Environment for Bayesian Inference
.mcmchmc	Complete Environment for Bayesian Inference
.mcmchmcda	Complete Environment for Bayesian Inference
.mcmcim	Complete Environment for Bayesian Inference
.mcmcinca	Complete Environment for Bayesian Inference
.mcmcmala	Complete Environment for Bayesian Inference
.mcmcmcmcmc	Complete Environment for Bayesian Inference
.mcmcmtm	Complete Environment for Bayesian Inference
.mcmcmwg	Complete Environment for Bayesian Inference
.mcmcnuts	Complete Environment for Bayesian Inference
.mcmcohss	Complete Environment for Bayesian Inference
.mcmcram	Complete Environment for Bayesian Inference
.mcmcrdmh	Complete Environment for Bayesian Inference
.mcmcrefractive	Complete Environment for Bayesian Inference
.mcmcrj	Complete Environment for Bayesian Inference
.mcmcrss	Complete Environment for Bayesian Inference
.mcmcrwm	Complete Environment for Bayesian Inference
.mcmcsamwg	Complete Environment for Bayesian Inference
.mcmcsgld	Complete Environment for Bayesian Inference
.mcmcslice	Complete Environment for Bayesian Inference
.mcmcsmwg	Complete Environment for Bayesian Inference
.mcmcthmc	Complete Environment for Bayesian Inference
.mcmctwalk	Complete Environment for Bayesian Inference
.mcmcuess	Complete Environment for Bayesian Inference
.mcmcusamwg	Complete Environment for Bayesian Inference
.mcmcusmwg	Complete Environment for Bayesian Inference
.rowVars	Complete Environment for Bayesian Inference
.vbsalimans2	Complete Environment for Bayesian Inference