An Efficient and Deterministic Method for Identifying Topological Domains in Genomes

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Documentation for package ‘TopDom’ version 0.10.1

• DESCRIPTION file.
• Package NEWS.

Help Pages

countsPerRegion	Calculates Counts per Region in a TopDomData Object
ggCountHeatmap	Produce a Count Heatmap
ggDomain	Add a Topological Domain to a Count Heatmap
ggDomainLabel	Add a Topological Domain Label to a Count Heatmap
legacy	Easy Access to the Original TopDom 0.0.1 and 0.0.2 Implementations
overlapScores	Calculates Overlap Scores Between Two Sets of Topological Domains
readHiC	Reads Hi-C Contact Data from File
subsetByRegion	Subset a TopDomData Object by Region
TopDom	Identify Topological Domains from a Hi-C Contact Matrix
TopDom-data	Data for the TopDom Package