Gene Structure Survival using Topological Data Analysis

Documentation for package ‘GSSTDA’ version 0.1.3

case_tag	Case-control vector
check_arg_mapper	check_arg_mapper
check_filter_values	check_filter_values
check_full_data	check_full_data
check_gene_selection	check_gene_selection
check_vectors	check_vectors
clust_all_levels	Get clusters for all data level
clust_lev	Get clusters for a particular data level
compute_node_adjacency	Computes the adjacency matrix.
cox_all_genes	Survival analysis based on gene expression levels.
denoise_rectangular_matrix	Rectangular Matrix Denoiser.
DGSA	Disease-Specific Genomic Analysis
flatten_normal_tiss	Flatten normal tissues
full_data	Gene expression matrix
fun_to_int	Marcenko-Pastur distribution to integrate.
generate_disease_component	Generate disease component matrix.
geneSelection	Gene selection and filter function
geneSelection.default	gene_selection_classes.default
geneSelection.DGSA_object	gene_selection_classes.DGSA_object
gene_selection	gene_selection
gene_selection_surv	Gene selection based on variability and the relationship to survival.
get_intervals_One_D	Extract intervals from filter function output values.
get_lambda	Computes lambda
get_mu_beta	Get mu sub beta
get_omega	Compute the omega value
GSSTDA	Gene Structure Survival using Topological Data Analysis (GSSTDA).
levels_to_nodes	Extract Information about Nodes
lp_norm_k_powers_surv	Filtering function
mapper	Mapper object
map_to_color	Map to color
one_D_Mapper	one_D_Mapper
plot_DGSA	plot DGSA
plot_mapper	Plot mapper
results_DGSA	results DGSA
samples_in_levels	Samples in levels
survival_event	Survival event vector
survival_time	Survival time vector