case_tag |
Case-control vector |
check_arg_mapper |
check_arg_mapper |
check_filter_values |
check_filter_values |
check_full_data |
check_full_data |
check_gene_selection |
check_gene_selection |
check_vectors |
check_vectors |
clust_all_levels |
Get clusters for all data level |
clust_lev |
Get clusters for a particular data level |
compute_node_adjacency |
Computes the adjacency matrix. |
cox_all_genes |
Survival analysis based on gene expression levels. |
denoise_rectangular_matrix |
Rectangular Matrix Denoiser. |
dsga |
Disease-Specific Genomic Analysis |
flatten_normal_tiss |
Flatten normal tissues |
full_data |
Gene expression matrix |
generate_disease_component |
Generate disease component matrix. |
gene_selection |
Gene selection and filter function |
gene_selection.default |
gene_selection_classes.default |
gene_selection.dsga_object |
gene_selection_classes.dsga_object |
gene_selection_ |
Private gene_selection_ |
gene_selection_surv |
Gene selection based on variability and the relationship to survival. |
get_intervals_One_D |
Extract intervals from filter function output values. |
gsstda |
Gene Structure Survival using Topological Data Analysis (GSSTDA). |
incMarPas |
Incomplete Marcenko-Pastur Integral |
levels_to_nodes |
Extract Information about Nodes |
lp_norm_k_powers_surv |
Filtering function |
mapper |
Mapper object |
map_to_color |
Map to color |
MedianMarcenkoPastur |
Median of the Marcenko-Pastur Distribution |
one_D_Mapper |
one_D_Mapper |
optimal_SVHT_coef_gamma_known |
Optimal SVHT Coefficient with Known Noise Level |
optimal_SVHT_coef_gamma_unknown |
Optimal SVHT Coefficient with Unknown Noise Level |
plot_dsga |
plot dsga |
plot_mapper |
Plot mapper |
results_dsga |
results dsga |
samples_in_levels |
Samples in levels |
survival_event |
Survival event vector |
survival_time |
Survival time vector |