check.pedinfo |
Check pedigree information. |
fgl2ibd |
Score IBD state. |
fgl2relatedness |
Score pairwise relatedness. |
get.pedindex |
Get pedigree index. |
grm.matrix |
GRM for multiple individuals |
grm.pair |
GRM for a pair of individuals. |
ibd.length |
Score IBD length. |
ibd.marker |
Score IBD sharing at a list of marker positions. |
ibd.proportion |
Score IBD proportion. |
ibd.segment |
Score IBD sharing by segment. |
ld.weights |
LD weights |
populate.snp |
Populate SNPs. |
read.plink.binary |
Read PLINK binary file. |
read.plink.text |
Read PLINK text file. |
recode.ibd |
Recode IBD sharing. |
recode.snpdata |
Recode SNP marker data. |
sim.haplotype |
Simulate artificial haplotypes. |
sim.recomb |
Simulate inheritance on a given pedigree. |
write.ibdhaplo |
Write IBDHAPLO |