celltrackR-package |
celltrackR: Quantitative analysis of motion. |
aggregate |
Compute Summary Statistics of Subtracks |
aggregate.tracks |
Compute Summary Statistics of Subtracks |
analyzeCellPairs |
Find Distances and Angles for all Pairs of Tracks |
analyzeStepPairs |
Find Distances and Angles for all Pairs of Steps |
AngleAnalysis |
Angle Analysis |
angleCells |
Angle between Two Tracks |
angleSteps |
Angle between Two Steps |
angleToDir |
Angle with a Reference Direction |
angleToPlane |
Angle with a Reference Plane |
angleToPoint |
Angle with a Reference Point |
applyStaggered |
Compute a Measure on a Track in a Staggered Fashion |
as.data.frame.tracks |
Convert Tracks to Data Frame |
as.list.tracks |
Convert from Tracks to List |
as.tracks |
Tracks Objects |
as.tracks.data.frame |
Convert from Data Frame to Tracks |
as.tracks.list |
Tracks Objects |
asphericity |
Track Measures |
BCells |
Two-Photon Data: B Cells in a Lymph Node |
beaucheminTrack |
Simulate a 3D Cell Track Using the Beauchemin Model |
bootstrapTrack |
Simulate Tracks via Bootstrapping of Speed and Turning Angle from a Real Track Dataset |
boundingBox |
Bounding Box of a Tracks Object |
brownianTrack |
Simulate an Uncorrelated Random Walk |
c.tracks |
Tracks Objects |
cellPairs |
Find Pairs of Tracks |
celltrackR |
celltrackR: Quantitative analysis of motion. |
cheatsheet |
Open the package cheat sheet |
clusterTracks |
Cluster Tracks |
displacement |
Track Measures |
displacementRatio |
Track Measures |
displacementVector |
Track Measures |
distanceCells |
Minimum Distance between Two Cells |
distanceSteps |
Distance between Two Steps |
distanceToPlane |
Distance to a Reference Plane |
distanceToPoint |
Distance to a Reference Point |
duration |
Track Measures |
filterTracks |
Filter Tracks |
fractalDimension |
Track Measures |
get.immap.metadata |
Get Track Metadata from ImmuneMap |
get.immap.tracks |
Read tracks from ImmuneMap |
getFeatureMatrix |
Obtaining A Feature Matrix |
hotellingsTest |
Test Unbiasedness of Motion |
hurstExponent |
Track Measures |
interpolateTrack |
Interpolate Track Positions |
is.tracks |
Tracks Objects |
maxDisplacement |
Track Measures |
maxTrackLength |
Length of Longest Track |
meanTurningAngle |
Track Measures |
Neutrophils |
Two-Photon Data: Neutrophils responding to an infection in the ear |
normalizeToDuration |
Normalize a Measure to Track Duration |
normalizeTracks |
Normalize Tracks |
outreachRatio |
Track Measures |
overallAngle |
Track Measures |
overallDot |
Track Measures |
overallNormDot |
Track Measures |
pairsByTime |
Distance between pairs of tracks at every timepoint |
parse.immap.json |
Read tracks from ImmuneMap |
plot.tracks |
Plot Tracks in 2D |
plot3d |
Plot Tracks in 3D |
plotTrackMeasures |
Bivariate Scatterplot of Track Measures |
prefixes |
Get Track Prefixes |
projectDimensions |
Extract Spatial Dimensions |
read.immap.json |
Read tracks from ImmuneMap |
read.tracks.csv |
Read Tracks from Text File |
ReadImmuneMap |
Read tracks from ImmuneMap |
repairGaps |
Process Tracks Containing Gaps |
selectSteps |
Get Single Steps Starting at a Specific Time from a Subset of Tracks |
selectTracks |
Select Tracks by Measure Values |
simulateTracks |
Generate Tracks by Simulation |
sort.tracks |
Sort Track Positions by Time |
speed |
Track Measures |
splitTrack |
Split Track into Multiple Tracks |
squareDisplacement |
Track Measures |
staggered |
Staggered Version of a Function |
stepPairs |
Find Pairs of Steps Occurring at the Same Time |
straightness |
Track Measures |
subsample |
Subsample Track by Constant Factor |
subtracks |
Decompose Track(s) into Subtracks |
subtracksByTime |
Extract Subtracks Starting at a Specific Time |
TCells |
Two-Photon Data: T Cells in a Lymph Node |
timePoints |
Find All Unique Time Points in a Track Dataset |
timeStep |
Compute Time Step of Tracks |
trackFeatureMap |
Dimensionality Reduction on Track Features |
trackLength |
Track Measures |
TrackMeasures |
Track Measures |
tracks |
Tracks Objects |
vecAngle |
Angle Between Two Vectors |
wrapTrack |
Create Track Object from Single Track |