anc_coeff_to_GeneticSimilarityMatrix |
calculate genetic similarity from ancestry coefficients. |
get_GGNet_adjacency_matrix |
obtain an adjacency matrix to make a network graph |
ggoutlier |
Identify outliers with unusual geo-genetic patterns |
ggoutlier_compositeKNN |
GGoutlieR with the composite approach |
ggoutlier_example |
Example of 'ggoutlier' output |
ggoutlier_geneticKNN |
GGoutlieR with the genetic KNN approach |
ggoutlier_geoKNN |
GGoutlieR with the geographical KNN approach |
ipk_anc_coef |
Ancestry coefficients of IPK barley landraces |
ipk_geo_coord |
Geographical origins of IPK barley landraces |
plot_ggoutlier |
Visualize GGoutlieR results on a geographical map |
summary_ggoutlier |
Summarize GGoutlieR results |