getAssoGeneSetPValue |
Calculate the p-value between selected genes and functional gene set |
getBestAssociatedGeneSet |
Get best associated functional gene sets for partitions of gene i |
getBonferroniPValue |
Adjust p-value by Bonferroni correction |
getDE_DC_OptimalThreshold |
Perform chi-square optimization |
getFDR |
Adjust p-value by Benjamini and Hochberg method |
getPartitionIndex |
Get gene index of 8 partitions for gene i |
getPathway |
read functional gene sets |
openFileToWrite |
Open file to write result |
runDecode |
Differential Co-Expression and Differential Expression Analysis |
sumResult_MinGain |
Summarize the functional gene set results into text file |