Simulate Experimental Crosses

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Documentation for package ‘simcross’ version 0.6

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

AILped	Example AIL pedigree
calc_Lstar	Calculate adjusted chromosome length for obligate chiasma
CCcolors	Collaborative Cross colors
check_pedigree	Check a pedigree for errors
collapse_do_alleles	Collapse alleles for simulated DO genotypes
convert2geno	Convert continuous allele information into marker genotypes
convert2geno_allchr	Convert continuous allele information into marker genotypes for multiple chromosomes
create_parent	Create a parent object
cross	Cross two individuals
get_geno	Get genotype at a single position
mouseL_cox	Mouse chromosome lengths
mouseL_mgi	Mouse chromosome lengths
plot_crosslines	Plot cross lines
plot_ind	Plot an individual
sim_4way_pedigree	Simulate pedigree for 4-way intercross
sim_ail_pedigree	Simulate AIL pedigree
sim_ail_pedigree_fix_n	Simulate AIL pedigree with fixed n
sim_crossovers	Simulate crossover locations using the Stahl model
sim_dof1_pedigree	Simulate pedigree for F1 between diversity outbreds and another inbred line
sim_do_pedigree	Simulate a pedigree for Diversity Outbred mice
sim_do_pedigree_fix_n	Simulate a pedigree for Diversity Outbreds for a target sample size
sim_from_pedigree	Simulate genotypes for pedigree
sim_from_pedigree_allchr	Simulate genotypes for pedigree for multiple chromosomes
sim_meiosis	Simulate meiosis
sim_ril_pedigree	Generate a ril pedigree
where_het	Find heterozygous regions