check_spectra |
Evaluate the spectra regularities |
delineate_with_identification |
Delineate clusters from taxonomic identifications |
delineate_with_similarity |
Delineate clusters from a similarity matrix |
get_spectra_names |
Extract spectra names and check for uniqueness |
import_biotyper_spectra |
Importing spectra from the Bruker MALDI Biotyper device |
import_spede_clusters |
Import clusters results generated by SPeDE |
is_well_on_edge |
Identify the wells on the plate's edge |
merge_processed_spectra |
Merge multiple processed spectra and peaks |
pick_spectra |
Cherry-pick Bruker MALDI Biotyper spectra |
process_spectra |
Process Bruker MALDI Biotyper spectra _à la_ Strejcek et al. (2018) |
read_biotyper_report |
Importing Bruker MALDI Biotyper CSV report |
read_many_biotyper_reports |
Importing a list of Bruker MALDI Biotyper CSV reports |
remove_spectra |
Remove (raw or processed) spectra |
set_reference_spectra |
Set a reference spectrum for each cluster |