binomial_test |
Binomial Test |
blast_command_found |
Check BLAST Installation |
blast_version |
Get BLAST Version |
contains_wildcards |
Check Whether DNA Sequences Contain Wildcard Characters |
decode_quality_scores |
Decode DNA Sequence Quality Scores |
format_reference_database |
Format Reference Databases |
get_consensus_taxonomy |
Get Consensus Taxonomy from Taxonomic Strings |
get_taxonomic_level |
Get Specified Taxonomic Level from Taxonomic Strings |
get_taxonomies.IUCN |
Get Taxonomies from IUCN Red List Files |
get_taxonomies.species_binomials |
Get NCBI Taxonomies from Species Binomials |
isolate_amplicon |
Trim DNA Sequences to an Amplicon Region Using Forward and Reverse Primer Sequences |
local_taxa_tool |
Perform Geographically-Conscious Taxonomic Assignment |
merge_pairs |
Merge Forward and Reverse DNA Sequence Reads |
read.fasta |
Read FASTA Files |
read.fastq |
Read FASTQ Files |
reverse_complement |
Get the Reverse Complement of a DNA Sequence |
substitute_wildcards |
Substitute Wildcard Characters in a DNA Sequence |
trim_sequences |
Trim Target Nucleotide Sequence from DNA Sequences |
truncate_sequences.length |
Truncate DNA Sequences to Specified Length |
truncate_sequences.probability |
Truncate DNA Sequences at Specified Probability that All Bases were Called Correctly |
truncate_sequences.quality_score |
Truncate DNA Sequences at Specified Quality Score |
write.fasta |
Write FASTA Files |
write.fastq |
Write FASTQ Files |