Estimate Growth Rates from Experimental Data

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Documentation for package ‘growthrates’ version 0.8.4

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growthrates-package Estimate Growth Rates from Experimental Data
all_easylinear Easy Growth Rates Fit to data Frame
all_easylinear.data.frame Easy Growth Rates Fit to data Frame
all_easylinear.formula Easy Growth Rates Fit to data Frame
all_growthmodels Fit Nonlinear Growth Models to Data Frame
all_growthmodels.formula Fit Nonlinear Growth Models to Data Frame
all_growthmodels.function Fit Nonlinear Growth Models to Data Frame
all_splines Fit Exponential Growth Model with Smoothing Spline
all_splines.data.frame Fit Exponential Growth Model with Smoothing Spline
all_splines.formula Fit Exponential Growth Model with Smoothing Spline
antibiotic Plate Reader Data of Bacterial Growth
bactgrowth Plate Reader Data of Bacterial Growth
coef-method Accessor Methods of Package 'growthrates'.
deviance-method Accessor Methods of Package 'growthrates'.
df.residual-method Accessor Methods of Package 'growthrates'.
easylinear_fit-class S4 Classes of Package 'growthrates'
extcoef_logistic Extended Set of Coefficients of a Logistic Growth Model
fit_easylinear Fit Exponential Growth Model with a Heuristic Linear Method
fit_growthmodel Fit Nonlinear Parametric Growth Model
fit_spline Fit Exponential Growth Model with Smoothing Spline
functions Create a User-defined Parametric Growth Model
function_growthmodel-class Union Class of Growth Model or Function
growthmodel Create a User-defined Parametric Growth Model
growthmodel-class Class of Growth Model Functions
growthrates Estimate Growth Rates from Experimental Data
growthrates_fit-class S4 Classes of Package 'growthrates'
grow_baranyi The Baranyi and Roberts Growth Model
grow_exponential Exponential Growth Model
grow_genlogistic Generalized Logistic Growth Model
grow_gompertz Growth Model According to Gompertz
grow_gompertz2 Growth Model According to Gompertz
grow_gompertz3 Growth Model According to Gompertz
grow_huang Growth Model According to Huang
grow_logistic Logistic Growth Model
grow_richards Growth Model According to Richards
grow_twostep Twostep Growth Model
lines-method Plot Model Fits
lm_or_NULL-class Union Class of Linear Model or NULL
multiple_easylinear_fits-class S4 Classes of Package 'growthrates'
multiple_fits S4 Classes of Package 'growthrates'
multiple_fits-class S4 Classes of Package 'growthrates'
multiple_nonlinear_fits-class S4 Classes of Package 'growthrates'
multiple_smooth.spline_fits-class S4 Classes of Package 'growthrates'
names-method Get Names Attributes of Growth Models
names.growthmodel Get Names Attributes of Growth Models
names<--method Get Names Attributes of Growth Models
nonlinear_fit-class S4 Classes of Package 'growthrates'
obs-method Accessor Methods of Package 'growthrates'.
ode_genlogistic Generalized Logistic Growth Model
ode_twostep Twostep Growth Model
plot Plot Model Fits
plot-method Plot Model Fits
predict-method Model Predictions for 'growthrates' Fits
residuals-method Accessor Methods of Package 'growthrates'.
results-method Accessor Methods of Package 'growthrates'.
rsquared-method Accessor Methods of Package 'growthrates'.
smooth.spline_fit-class S4 Classes of Package 'growthrates'
summary-method Accessor Methods of Package 'growthrates'.
user-defined Create a User-defined Parametric Growth Model
[-method Extract or Replace Parts of a 'multiple_fits' Object
[[-method Extract or Replace Parts of a 'multiple_fits' Object