fcPlot |
Plotly or ggplot fold change plots |
ggmodelPlot |
Mixed model effects plot using ggplot2 |
glmmQvals |
Glmm Sequencing qvalues |
glmmRefit |
Refit mixed effects model |
glmmRefit.GlmmSeq |
Refit mixed effects model |
glmmRefit.lmmSeq |
Refit mixed effects model |
glmmSeq |
GLMM with negative binomial distribution for sequencing count data |
GlmmSeq-class |
An S4 class to define the glmmSeq output |
lmmSeq |
Linear mixed models for data matrix |
lmmSeq-class |
An S4 class to define the lmmSeq output |
maPlot |
MA plots |
metadata |
Minimal metadata from PEAC |
modelPlot |
Mixed model effects plot |
summary.GlmmSeq |
Summarise a 'glmmSeq'/'lmmSeq' object |
summary.lmmSeq |
Summarise a 'glmmSeq'/'lmmSeq' object |
tpm |
TPM count data from PEAC |