Bayesian Model to Estimate Population Trends from Counts Series


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Documentation for package ‘popbayes’ version 1.2.0

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bugs_to_df Extract estimated parameters from a list of BUGS outputs
diagnostic Check if a BUGS model has converged
filter_series Extract the count series corresponding to a location and/or a species
fit_trend Fit a Bayesian model to estimate population size trend
format_data Format count series
garamba African mammals survey in the Garamba National Park
list_series Retrieve the count series names
plot_series Plot original vs converted counts
plot_trend Plot estimated population trend
read_bugs Import a list of BUGS outputs previously exported
read_series Import a list of count series previously exported
series_to_df Extract original/converted count series data from a list
species_info Species information dataset
w_to_rmax Compute rmax from adult female body mass