BSL-package |
Bayesian synthetic likelihood |
BSL |
Bayesian synthetic likelihood |
bsl |
Performing BSL, uBSL, semiBSL and BSLmisspec |
BSL-class |
S4 class "BSL". |
BSLclass |
S4 class "BSL". |
cell |
Cell biology example |
cell_prior |
Cell biology example |
cell_sim |
Cell biology example |
cell_sum |
Cell biology example |
combinePlotsBSL |
Plot the densities of multiple "bsl" class objects. |
cor2cov |
Convert a correlation matrix to a covariance matrix |
estimateLoglike |
Estimate the synthetic likelihood |
estimateWhiteningMatrix |
Estimate the Whitening matrix to be used in the "wBSL" method of Priddle et al. (2021) |
gaussianRankCorr |
Gaussian rank correlation |
gaussianSynLike |
Estimate the Gaussian synthetic (log) likelihood |
gaussianSynLikeGhuryeOlkin |
Estimate the Gaussian synthetic (log) likelihood with an unbiased estimator |
getGamma |
Obtain the gamma samples (the latent parameters for BSLmisspec method) from a "BSL" object |
getGamma-method |
S4 class "BSL". |
getLoglike |
Obtain the log-likelihoods from a "BSL" object |
getLoglike-method |
S4 class "BSL". |
getPenalty |
Obtain the selected penalty values from a "PENALTY" object |
getPenalty-method |
S4 class "PENALTY" |
getTheta |
Obtain the samples from a "BSL" object |
getTheta-method |
S4 class "BSL". |
ma2 |
An MA(2) model |
ma2_prior |
An MA(2) model |
ma2_sim |
An MA(2) model |
ma2_sim_vec |
An MA(2) model |
ma2_sum |
An MA(2) model |
mgnk |
The multivariate G&K example |
mgnk_sim |
The multivariate G&K example |
mgnk_sum |
The multivariate G&K example |
MODEL |
S4 class "MODEL" |
MODEL-class |
S4 class "MODEL" |
newModel |
S4 class "MODEL" |
obsMat2deltax |
Convert an observation matrix to a vector of n-day displacements |
PENALTY |
S4 class "PENALTY" |
PENALTY-class |
S4 class "PENALTY" |
PENALTYclass |
S4 class "PENALTY" |
plot-method |
S4 class "BSL". |
plot-method |
S4 class "PENALTY" |
selectPenalty |
Selecting the Penalty Parameter |
semiparaKernelEstimate |
Estimate the semi-parametric synthetic (log) likelihood |
show-method |
S4 class "BSL". |
show-method |
S4 class "PENALTY" |
simulate_cell |
Simulation function of the cell biology example |
simulation |
Run simulations with a give "MODEL" object |
simulation-method |
S4 class "MODEL" |
sim_toad |
The simulation function for the toad example |
summary-method |
S4 class "BSL". |
summStat |
Compute the summary statistics with the given data |
summStat-method |
S4 class "MODEL" |
synLikeMisspec |
Estimate the Gaussian synthetic (log) likelihood whilst acknowledging model incompatibility |
toad |
Toad example |
toad_prior |
Toad example |
toad_sim |
Toad example |
toad_sum |
Toad example |