autoplot.phylepic |
Plot "phylepic" objects |
CoordTree |
Cartesian coordinates with specialised grid for trees |
coord_tree |
Cartesian coordinates with specialised grid for trees |
create_tree_layout |
Create a graph layout for plotting |
drop.clade |
Drop a clade from a phylogentic tree |
GeomCalendar |
Specialised tile geometry for calendar plots |
GeomTextFilled |
Annotate nodes with text and a background |
geom_calendar |
Specialised tile geometry for calendar plots |
geom_node_text_filled |
Annotate nodes with text and a background |
oob_infinite |
Out of bounds handling |
phylepic |
Combine metadata (a line list) with a phylogenetic tree |
plot.phylepic |
Plot "phylepic" objects |
plot_bars |
Plot metadata bars panel |
plot_calendar |
Plot calendar panel |
plot_epicurve |
Plot epidemic curve panel |
plot_tree |
Plot phylogenetic tree panel |
scale_x_week |
Date scale with breaks specified by week |
StatWeek |
Calculate week bins from dates |
StatWeek2d |
Calculate week bins from dates |
stat_week |
Calculate week bins from dates |
stat_week_2d |
Calculate week bins with additional binning in the y axis |
week_breaks |
Breaks for week-binning date axes |