Visualization of Patient Profiles

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Documentation for package ‘patientProfilesVis’ version 2.0.7

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addReferenceLinesProfilePlot Add reference lines to a profile plot
checkTimeExpand Check if some of the modules are time expanded, and extract maximum time expand for each module.
checkTimeTrans Check if the subject profiles are time transformed, and if some of the plots to align (with specified 'timeLim') have compatible time transformation alignments.
checkVar Check if specified variable(s) are present in the data.
combineVerticallyGGplot Combine vertically multiple 'ggplot'.
convertAesVar Convert aesthetic variable for patient profile visualization.
countNLines Count number of lines ('\n' character) per character in a vector
createSubjectProfileReport Create subject profile report.
defineIndex Define LaTeX index based on specified variable(s) of the dataset
filterData Filter a dataset for records of interest, for use in the patient profiles.
filterMissingInVar Filter missing records in data in the time and y variables, with informative message.
formatParamVarTextPlot Format text variables for the subject profile text plotting function.
formatTimeInterval Set missing start/end time variable in the data.
formatTimeLim Format specified 'timeLim'.
getAesScaleManual Get custom 'scale_[type]_manual' function
getColorPalettePatientProfile Get a color palette for patient profile visualizations.
getMaxNLinesCombinePlot Get maximum number of lines of a 'combined plot' for a specific document
getNLinesLabel Get number of lines for specific label either from a 'ggplot2' object via 'gg' or from the label via 'value'
getNLinesLegend Get number of lines in the legend, either from directly the 'ggplot2' object, or from the values of the legend ('legendValues') and title ('legendTitle')
getNLinesSubjectProfile Get approximately the number of 'lines' in the vertical direction of a subject profile.
getOptimalColWidth Get optimal column widths, based on the minimum word size and median number of characters in each column.
getPageVar Get variable with page of the plot, used for automatic paging of a plot
getPathTemplate Get path of the report template in the 'patientProfilesVis' package
getShapePalettePatientProfile Get a shape palette for patient profile visualizations.
getSplitVectorByInt Split/combine a vector of size(s) to have a fixed combined size
getTimeLimSubjectProfilePlots Get the limits to set for the subject profile plots, depending on the alignment policy set.
getTimeTrans Get useful transformation for the time variable in patient profiles.
getWidthPlot Get width for a plot for a certain page layout
interactionWithMissing Get interaction variable between different variables.
isSubjectProfileTimeVariant Check if the all profile(s) is/are 'time-variant', so not a subject profile 'text' module or empty plot
patientProfilesVis-common-args Arguments used across the functions of the patientProfilesVis package.
patientProfilesVis-palette Parameters for all patient profiles visualization palette functions.
prepareSubjectProfile prepare list of subject profile (s) to be combined with the 'combineVerticallyGGplot'
sortSubjects Sort subjects based on a specified dataset/variable.
subjectProfileCombine Combine subject profile plots.
subjectProfileEventPlot Visualize events in subject profiles, so event with a single time.
subjectProfileExport Create report
subjectProfileIntervalPlot Visualize time interval in subject profiles, so event with a start and end time.
subjectProfileLinePlot Visualize subject profiles of the evolution of continuous parameters versus time (spaghetti plot).
subjectProfileReportFormat Get list with format specification for subject profile report.
subjectProfileTextPlot Visualize text-information in subject profiles.
subjectProfileTheme Custom 'ggplot2[theme]' for subject profile plot. Currently classic dark-on-light ggplot2 theme with alternated grey color for vertical grid lines