Estimate the Burden of Healthcare-Associated Infections

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Documentation for package ‘BHAI’ version 0.99.2

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BHAI-package BHAI:
.PPS This class is a generic container for PPS data sets.
BHAI BHAI:
bhai Main function of the package to estimation of the burden of healthcare-associated infections
bhai-method Main function of the package to estimation of the burden of healthcare-associated infections
bhai.barplot Barplot of cases, deaths and DALYs.
bhai.circleplot Summary plot of number of infections, deaths and DALYs
bhai.prettyTable Create summary table
bhai.strataplot Stratified barplot of cases, deaths and DALYs.
eu_pps Aggregated data of the ECDC PPS 2010-2011.
german_pps_conv Aggregated data of the german PPS 2010-2011 (convenience sample).
hospital_discharges Hospital discharges in Germany (2011)
length_of_stay Average length of stay of survey patients in german PPS 2011 (representative sample)
loi_pps A list containing length of infections from all patients in the german PPS 2011 representative sample.
mccabe_life_exp Named list containing remaining life expectancies for each McCabe score (NONFATAL, ULTFATAL, RAPFATAL).
mccabe_scores_distr The observed McCabe scores (counts) for each infection, age and gender stratum from the ECDC PPS 2011-2012.
num_hai_patients Number of cases for each infection in the german PPS 2011 (representative sample)
num_hai_patients_by_stratum Stratified number of cases for each infection in the german PPS 2011 (representative sample)
num_hai_patients_by_stratum_prior Stratified number of cases for each infection in the german PPS 2011 (convenience sample). This distribution is used as a Prior for the representative sample.
num_survey_patients Number of survey patients in the german PPS 2011 (representative sample).
population Population size of Germany in 2011.
PPS Create a PPS object
PPS-class This class is a generic container for PPS data sets.
sample.pps Simulate PPS data
sim_pps Simulated/subsampled data sets from european PPS
sim_pps_bhai BHAI with default options was applied to simulated/subsampled data sets from european PPS
sim_pps_bhai_prior BHAI with prior was applied to simulated/subsampled data sets from european PPS
sim_pps_stratified BHAI with stratified sampling was applied to simulated/subsampled data sets from european PPS