Big Data Mapping
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Documentation for package ‘bigMap’ version 2.3.1
Help Pages
| bdm.boxp | Clustering statistics box-plot. |
| bdm.cost | ptSNE cost & size plot. |
| bdm.dMap | Class density maps |
| bdm.dMap.plot | Class density maps plot. |
| bdm.example | Example dataset |
| bdm.fName | Default <bdm> file name |
| bdm.init | Create <bdm> instance |
| bdm.labels | Get data-point clustering labels. |
| bdm.local | Set/get default local machine name or IP address |
| bdm.merge.s2nr | Merging of clusters based on signal-to-noise-ratio. |
| bdm.mybdm | Set/get default path for <mybdm> |
| bdm.optk.plot | Plots the signal-to-nois-ratio as a function of the number of clusters. |
| bdm.optk.s2nr | Find optimal number of clusters based on signal-to-noise-ratio. |
| bdm.pakde | Perplexity-adaptive kernel density estimation |
| bdm.pakde.plot | Plot paKDE (density landscape) |
| bdm.ptsne | Parallelized t-SNE |
| bdm.ptsne.plot | Plot ptSNE (low-dimensional embedding) |
| bdm.qMap | ptSNE quantile-maps |
| bdm.save | Save <bdm> instance |
| bdm.scp | Transfer <bdm> instance to a remote machine. |
| bdm.wtt | Watertrack transform (WTT) |
| bdm.wtt.plot | Plot WTT (clustering) |