coef.cyclopsFit |
Extract model coefficients |
confint.cyclopsFit |
Confidence intervals for Cyclops model parameters |
convertToCyclopsData |
Convert data from two data frames or ffdf objects into a CyclopsData object |
convertToCyclopsData.data.frame |
Convert data from two data frames or ffdf objects into a CyclopsData object |
convertToCyclopsData.tbl_dbi |
Convert data from two data frames or ffdf objects into a CyclopsData object |
convertToTimeVaryingCoef |
Convert short sparse covariate table to long sparse covariate table for time-varying coefficients. |
coverage |
Coverage |
createAutoGridCrossValidationControl |
Create a Cyclops control object that supports multiple hyperparameters |
createControl |
Create a Cyclops control object |
createCyclopsData |
Create a Cyclops data object |
createNonSeparablePrior |
Create a Cyclops prior object that returns the MLE of non-separable coefficients |
createParameterizedPrior |
Create a Cyclops parameterized prior object |
createPrior |
Create a Cyclops prior object |
createWeightBasedSearchControl |
Create a Cyclops control object that supports in- / out-of-sample hyperparameter search using weights |
cyclops |
Cyclops: Cyclic coordinate descent for logistic, Poisson and survival analysis |
fitCyclopsModel |
Fit a Cyclops model |
fitCyclopsSimulation |
Fit simulated data |
getCovariateIds |
Get covariate identifiers |
getCovariateTypes |
Get covariate types |
getCyclopsProfileLogLikelihood |
Profile likelihood for Cyclops model parameters |
getFineGrayWeights |
Creates a 'Surv' object that forces in competing risks and the IPCW needed for Fine-Gray estimation. |
getFloatingPointSize |
Get floating point size |
getHyperParameter |
Get hyperparameter |
getNumberOfCovariates |
Get total number of covariates |
getNumberOfRows |
Get total number of rows |
getNumberOfStrata |
Get number of strata |
getUnivariableCorrelation |
Get univariable correlation |
getUnivariableSeparability |
Get univariable linear separability |
isInitialized |
Check if a Cyclops data object is initialized |
listGPUDevices |
List available GPU devices |
logLik.cyclopsFit |
Extract log-likelihood |
meanLinearPredictor |
Calculates xbar*beta |
mse |
Mean squared error |
Multitype |
Create a multitype outcome object |
oxford |
Oxford self-controlled case series data |
predict.cyclopsFit |
Model predictions |
print.cyclopsData |
Print a Cyclops data object |
print.cyclopsFit |
Print a Cyclops model fit object |
readCyclopsData |
Read Cyclops data from file |
runBootstrap |
Run Bootstrap for Cyclops model parameter |
setOpenCLDevice |
Set GPU device |
simulateCyclopsData |
Simulation Cyclops dataset |
splitTime |
Split the analysis time into several intervals for time-varying coefficients. |
summary.cyclopsData |
Cyclops data object summary |
survfit.cyclopsFit |
Calculate baseline hazard function |
vcov.cyclopsFit |
Calculate variance-covariance matrix for a fitted Cyclops model object |